Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005919

Physical Location & Seq

Genomic Coordinates Forward (+)

9841318 .. 9843769

Gene Structure 2452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g15760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGAAGTTCCCAATTCCCTGCACAAATTGCTTCCACTCCTCACCTGGAGAAGCCCCTCAAAGATTGAGGCAAGATGGTCAAGATCAGGAAAATTTCAGAATTTTCTCTTGCAAGGAGTTGAAATCTGCCACTAATGGCTTCCACGCCTCGAACAAGCTTGGAGAAGGTGGCTTTGGCTCAGTTTTTAAGGGTAAGCTTAAGGATGGTACTTTTGTGGCTATAAAGGTGCTCTCCATCGAACTCGAATCGATGCGAGGAGAGAGGGAGTTCATAGCTGAATTGGCTGCACTTTCTGTAATCAGTCATGAAAATCTTGTTAAATTGCGAGGGTGTTGTGTTGATGGTGTTGCCAGATATTTGGTCTATGATTACATGATAAACAATAGTCTTGCACACACTTTATTAGGTGGAGAGCAAAACAGGATGAAATTTAGTTGGGATTTAAGGAGGAGCGTTGCATTAGGAATAGCTCGTGGACTTGCCTATCTGCATTTCGAGGTTGAACCTCATATTCTGCACCGAGACATTAAGGCGAGTAACATACTTCTTGATGAAAACTTCATGCCAAAGGTTGGAGATTTTGGCTTATCGAAGCTGTTAAGAGAAAACCATTCTCATATCAGTACTCGGGTTGCTGGGACAATGGGTTATCTTGCTCCAGAATATGCTATTAGCGGACGCTTGACGCGGAAATCAGATGTTTACAGCTTTGGAGTTCTGCTGTTGGAGATTGTCAGCGGCCGTGCAATTGTGGATTTTGATATGCAACTTGGGGAGCAATTTCTGGTTCAGAAGGCATGGGAATCATACAAGGCCGACAACCTCCTGCAGCTAGTTGATCCTACACTTCATATGAACTTCCCCAAAGATGAAGCTCTACGATTCTTAAAAGTAGGCCTTCTTTGTGTGCAAGAAATGGCAAGACTCCGGCCACGAATGACAAGGACTGTTGAGATGTTGGCGGGTGAGATTGAAATGAAAGATTATCAGATTTCACAACCTGGACTTGTTTCTGATTTTACAAACATCAAAATGGATCAGCATCAGTCAGGTGATCAGAGTACTTTCTCCAGGGGCTCCGCAGCTAGTACCATTCAAACACGTTTTTCATCTGAGGAGTTCAAGTTATCCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

379

Amino Acids

42.48

Weight (kDa)

7.17

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	47 - 309	7.8e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	49 - 320	1.3e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15760 FvH4_7g19720 FvH4_7g19720
malus_domestica	MD01G1109700.v1.1 MD04G1098900.v1.1 MD12G1119500.v1.1
prunus_persica	Prupe.2G214600_v2.0.a1 Prupe.6G237400_v2.0.a1 Prupe.6G237400_v2.0.a1
pyrus_communis	pycom01g13680 pycom04g09390 pycom12g11850
rosa_chinensis	RchiOBHm_Chr1g0363561
rosa_laevigata	RLG00000027557
rosa_multiflora	Rmu_sc0000548.1_g000001 Rmu_sc0004871.1_g000014 Rmu_ssc0000433.1_g000008
rosa_roxburghii	Rroxscaffold_4G00293080 Rroxscaffold_6G00411830
rosa_rugosa	Rorug01G0308100 Rorug03G0102000 Rorug03G0102100
rosa_samantha	Rh1BG280300 Rh1CG296400 Rh1DG311500 Rh3DG200700
rosa_wichuraiana	Rw1G028100 Rw3G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	572
AccII	CGCG	1 cut(s)	688
AciI	CCGC	5 cut(s)	675, 688, 738, 962, 1080
AclWI	GGATC	2 cut(s)	833, 1044
AcoI	YGGCCR	2 cut(s)	739, 929
AcsI	RAATTY	3 cut(s)	91, 99, 428
AfaI	GTAC	4 cut(s)	208, 625, 1063, 1090
AfiI	CCNNNNNNNGG	1 cut(s)	572
AflII	CTTAAG	1 cut(s)	197
AflIII	ACRYGT	1 cut(s)	1100
AgsI	TTSAA	5 cut(s)	121, 503, 974, 1097, 1123
AjnI	CCWGG	3 cut(s)	43, 1000, 1070
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	9 cut(s)	157, 196, 275, 470, 595, 708, 832, 875, 1085
AluI	AGCT	9 cut(s)	157, 196, 275, 470, 595, 708, 832, 875, 1085
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	516
AlwI	GGATC	2 cut(s)	833, 1044
Ama87I	CYCGRG	1 cut(s)	627
AoxI	GGCC	4 cut(s)	739, 813, 895, 929
ApeKI	GCWGC	3 cut(s)	284, 829, 1082
ApoI	RAATTY	3 cut(s)	91, 99, 428
AsuHPI	GGTGA	3 cut(s)	33, 977, 1064
AvaI	CYCGRG	1 cut(s)	627
BaeI	ACNNNNGTAYC	2 cut(s)	198, 231
BanII	GRGCYC	1 cut(s)	1079
BauI	CACGAG	1 cut(s)	471
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	3 cut(s)	271, 841, 1094
BccI	CCATC	4 cut(s)	68, 197, 242, 335
BceAI	ACGGC	1 cut(s)	726
BciT130I	CCWGG	3 cut(s)	45, 1002, 1072
BclI	TGATCA	1 cut(s)	1054
BcoDI	GTCTC	1 cut(s)	516
BfaI	CTAG	2 cut(s)	833, 1086
BfmI	CTRYAG	1 cut(s)	827
BfrI	CTTAAG	1 cut(s)	197
BisI	GCNGC	4 cut(s)	285, 739, 830, 1083
BlsI	GCNGC	4 cut(s)	286, 740, 831, 1084
BmcAI	AGTACT	2 cut(s)	625, 1063
Bme1390I	CCNGG	3 cut(s)	45, 1002, 1072
BmeT110I	CYCGRG	1 cut(s)	627
BmiI	GGNNCC	1 cut(s)	1078
BmrFI	CCNGG	3 cut(s)	45, 1002, 1072
BmsI	GCATC	2 cut(s)	240, 1051
BpmI	CTGGAG	3 cut(s)	66, 642, 1054
Bsa29I	ATCGAT	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	1041
BsaJI	CCNNGG	1 cut(s)	1071
BsaXI	ACNNNNNCTCC	1 cut(s)	1109
Bsc4I	CCNNNNNNNGG	1 cut(s)	572
Bse8I	GATNNNNATC	1 cut(s)	1041
BseBI	CCWGG	3 cut(s)	45, 1002, 1072
BseCI	ATCGAT	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	1071
BseGI	GGATG	2 cut(s)	208, 429
BseJI	GATNNNNATC	1 cut(s)	1041
BseLI	CCNNNNNNNGG	1 cut(s)	572
BseMII	CTCAG	2 cut(s)	192, 1104
BseRI	GAGGAG	4 cut(s)	28, 270, 463, 1130
BseX3I	CGGCCG	1 cut(s)	739
BseXI	GCAGC	3 cut(s)	271, 841, 1094
BseYI	CCCAGC	1 cut(s)	635
BsgI	GTGCAG	3 cut(s)	4, 270, 500
Bsh1236I	CGCG	1 cut(s)	688
Bsh1285I	CGRYCG	1 cut(s)	742
BshFI	GGCC	4 cut(s)	741, 815, 897, 931
BshVI	ATCGAT	1 cut(s)	248
BsiEI	CGRYCG	1 cut(s)	742
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	627
BsiSI	CCGG	1 cut(s)	928
BslFI	GGGAC	1 cut(s)	652
BslI	CCNNNNNNNGG	1 cut(s)	572
BsmAI	GTCTC	1 cut(s)	516
BsmFI	GGGAC	1 cut(s)	652
BsnI	GGCC	4 cut(s)	741, 815, 897, 931
BsoBI	CYCGRG	1 cut(s)	627
Bsp1286I	GDGCHC	2 cut(s)	231, 1079
Bsp143I	GATC	4 cut(s)	82, 838, 1036, 1054
BspACI	CCGC	5 cut(s)	675, 688, 738, 962, 1080
BspANI	GGCC	4 cut(s)	741, 815, 897, 931
BspCNI	CTCAG	2 cut(s)	191, 1105
BspDI	ATCGAT	1 cut(s)	248
BspFNI	CGCG	1 cut(s)	688
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	1078
BspMAI	CTGCAG	1 cut(s)	831
BspPI	GGATC	2 cut(s)	833, 1044
BspTI	CTTAAG	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	1071
BssMI	GATC	4 cut(s)	82, 838, 1036, 1054
BssSI	CACGAG	1 cut(s)	471
Bst2BI	CACGAG	1 cut(s)	471
Bst2UI	CCWGG	3 cut(s)	45, 1002, 1072
Bst4CI	ACNGT	1 cut(s)	949
BstAFI	CTTAAG	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstDEI	CTNAG	2 cut(s)	178, 1113
BstF5I	GGATG	2 cut(s)	208, 429
BstFNI	CGCG	1 cut(s)	688
BstKTI	GATC	4 cut(s)	85, 841, 1039, 1057
BstMAI	GTCTC	1 cut(s)	516
BstMBI	GATC	4 cut(s)	82, 838, 1036, 1054
BstMCI	CGRYCG	1 cut(s)	742
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 281
BstNI	CCWGG	3 cut(s)	45, 1002, 1072
BstSCI	CCNGG	3 cut(s)	43, 1000, 1070
BstSFI	CTRYAG	1 cut(s)	827
BstUI	CGCG	1 cut(s)	688
BstV1I	GCAGC	3 cut(s)	271, 841, 1094
BstXI	CCANNNNNNTGG	1 cut(s)	358
BstZI	CGGCCG	1 cut(s)	739
Bsu15I	ATCGAT	1 cut(s)	248
BsuRI	GGCC	4 cut(s)	741, 815, 897, 931
BsuTUI	ATCGAT	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	208, 429
CciI	TCATGA	1 cut(s)	304
ClaI	ATCGAT	1 cut(s)	248
CseI	GACGC	2 cut(s)	687, 694
Csp6I	GTAC	4 cut(s)	207, 624, 1062, 1089
CviAII	CATG	4 cut(s)	305, 373, 562, 798
CviQI	GTAC	4 cut(s)	207, 624, 1062, 1089
DdeI	CTNAG	2 cut(s)	178, 1113
DpnI	GATC	4 cut(s)	84, 840, 1038, 1056
DpnII	GATC	4 cut(s)	82, 838, 1036, 1054
EaeI	YGGCCR	2 cut(s)	739, 929
EagI	CGGCCG	1 cut(s)	739
EclXI	CGGCCG	1 cut(s)	739
Eco147I	AGGCCT	1 cut(s)	897
Eco24I	GRGCYC	1 cut(s)	1079
Eco52I	CGGCCG	1 cut(s)	739
Eco88I	CYCGRG	1 cut(s)	627
EcoRII	CCWGG	3 cut(s)	43, 1000, 1070
EcoT38I	GRGCYC	1 cut(s)	1079
FaeI	CATG	4 cut(s)	308, 376, 565, 801
FalI	AAGNNNNNCTT	2 cut(s)	882, 914
FaqI	GGGAC	1 cut(s)	652
FatI	CATG	4 cut(s)	304, 372, 561, 797
FauI	CCCGC	1 cut(s)	955
FauNDI	CATATG	1 cut(s)	852
FbaI	TGATCA	1 cut(s)	1054
Fnu4HI	GCNGC	4 cut(s)	285, 739, 830, 1083
FokI	GGATG	2 cut(s)	215, 436
FriOI	GRGCYC	1 cut(s)	1079
Fsp4HI	GCNGC	4 cut(s)	285, 739, 830, 1083
FspBI	CTAG	2 cut(s)	833, 1086
GluI	GCNGC	4 cut(s)	285, 739, 830, 1083
GsaI	CCCAGC	1 cut(s)	639
GsuI	CTGGAG	3 cut(s)	66, 642, 1054
HaeIII	GGCC	4 cut(s)	741, 815, 897, 931
HapII	CCGG	1 cut(s)	928
HgaI	GACGC	2 cut(s)	687, 694
Hin1II	CATG	4 cut(s)	308, 376, 565, 801
HindIII	AAGCTT	2 cut(s)	155, 194
HinfI	GANTC	4 cut(s)	245, 803, 882, 924
HpaII	CCGG	1 cut(s)	928
HphI	GGTGA	3 cut(s)	33, 977, 1064
Hpy166II	GTNNAC	2 cut(s)	476, 703
Hpy188I	TCNGA	7 cut(s)	98, 697, 792, 990, 1015, 1059, 1114
Hpy188III	TCNNGA	5 cut(s)	80, 86, 305, 548, 659
Hpy8I	GTNNAC	2 cut(s)	476, 703
HpyAV	CCTTC	3 cut(s)	158, 787, 908
HpyCH4III	ACNGT	1 cut(s)	949
HpyCH4IV	ACGT	1 cut(s)	1102
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 281
HpyF3I	CTNAG	2 cut(s)	178, 1113
HpySE526I	ACGT	1 cut(s)	1102
Hsp92II	CATG	4 cut(s)	308, 376, 565, 801
Ksp22I	TGATCA	1 cut(s)	1054
Kzo9I	GATC	4 cut(s)	82, 838, 1036, 1054
LmnI	GCTCC	4 cut(s)	450, 661, 775, 1082
Lsp1109I	GCAGC	3 cut(s)	271, 841, 1094
LweI	GCATC	2 cut(s)	240, 1051
MaeI	CTAG	2 cut(s)	833, 1086
MaeII	ACGT	1 cut(s)	1102
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	4 cut(s)	84, 840, 1038, 1056
MboI	GATC	4 cut(s)	82, 838, 1036, 1054
MfeI	CAATTG	1 cut(s)	747
MhlI	GDGCHC	2 cut(s)	231, 1079
MluCI	AATT	9 cut(s)	12, 25, 91, 99, 278, 320, 428, 747, 779
MlyI	GAGTC	1 cut(s)	918
MmeI	TCCRAC	2 cut(s)	553, 705
MseI	TTAA	7 cut(s)	186, 198, 318, 443, 528, 599, 887
MslI	CAYNNNNRTG	1 cut(s)	1031
MspA1I	CMGCKG	1 cut(s)	738
MspCI	CTTAAG	1 cut(s)	197
MspI	CCGG	1 cut(s)	928
MspR9I	CCNGG	3 cut(s)	45, 1002, 1072
MunI	CAATTG	1 cut(s)	747
MvaI	CCWGG	3 cut(s)	45, 1002, 1072
MvnI	CGCG	1 cut(s)	688
MwoI	GCNNNNNNNGC	2 cut(s)	27, 281
NdeI	CATATG	1 cut(s)	852
NdeII	GATC	4 cut(s)	82, 838, 1036, 1054
NlaIII	CATG	4 cut(s)	308, 376, 565, 801
NlaIV	GGNNCC	1 cut(s)	1078
PagI	TCATGA	1 cut(s)	304
PceI	AGGCCT	1 cut(s)	897
PfeI	GAWTC	3 cut(s)	245, 803, 882
PflMI	CCANNNNNTGG	1 cut(s)	572
PkrI	GCNGC	4 cut(s)	286, 740, 831, 1084
PleI	GAGTC	1 cut(s)	918
PpsI	GAGTC	1 cut(s)	918
Psp6I	CCWGG	3 cut(s)	43, 1000, 1070
PspFI	CCCAGC	1 cut(s)	635
PspGI	CCWGG	3 cut(s)	43, 1000, 1070
PspN4I	GGNNCC	1 cut(s)	1078
PstI	CTGCAG	1 cut(s)	831
RsaI	GTAC	4 cut(s)	208, 625, 1063, 1090
RsaNI	GTAC	4 cut(s)	207, 624, 1062, 1089
RseI	CAYNNNNRTG	1 cut(s)	1031
SaqAI	TTAA	7 cut(s)	186, 198, 318, 443, 528, 599, 887
SatI	GCNGC	4 cut(s)	285, 739, 830, 1083
Sau3AI	GATC	4 cut(s)	82, 838, 1036, 1054
ScaI	AGTACT	2 cut(s)	625, 1063
SchI	GAGTC	1 cut(s)	918
ScrFI	CCNGG	3 cut(s)	45, 1002, 1072
SduI	GDGCHC	2 cut(s)	231, 1079
SfaNI	GCATC	2 cut(s)	240, 1051
SfcI	CTRYAG	1 cut(s)	827
SmiMI	CAYNNNNRTG	1 cut(s)	1031
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	9 cut(s)	12, 25, 91, 99, 278, 320, 428, 747, 779
SseBI	AGGCCT	1 cut(s)	897
SsiI	CCGC	5 cut(s)	675, 688, 738, 962, 1080
SspMI	CTAG	2 cut(s)	833, 1086
StuI	AGGCCT	1 cut(s)	897
StyD4I	CCNGG	3 cut(s)	43, 1000, 1070
TaaI	ACNGT	1 cut(s)	949
TaiI	ACGT	1 cut(s)	1105
TaqI	TCGA	6 cut(s)	149, 237, 243, 248, 495, 590
TasI	AATT	9 cut(s)	12, 25, 91, 99, 278, 320, 428, 747, 779
TatI	WGTACW	2 cut(s)	623, 1061
TauI	GCSGC	1 cut(s)	741
TfiI	GAWTC	3 cut(s)	245, 803, 882
Tru1I	TTAA	7 cut(s)	186, 198, 318, 443, 528, 599, 887
Tru9I	TTAA	7 cut(s)	186, 198, 318, 443, 528, 599, 887
TseI	GCWGC	3 cut(s)	284, 829, 1082
Van91I	CCANNNNNTGG	1 cut(s)	572
Vha464I	CTTAAG	1 cut(s)	197
XapI	RAATTY	3 cut(s)	91, 99, 428
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XspI	CTAG	2 cut(s)	833, 1086
ZrmI	AGTACT	2 cut(s)	625, 1063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.