Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005919

Physical Location & Seq

Genomic Coordinates Reverse (-)

13337711 .. 13342950

Gene Structure 5240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00293080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGATTTTCATCCCTCCAGTAAAATTGGTGAAGGCGGATTTGGCGCTGTTTACAAGATTAAATGACGGAAGAGATGTGGCCGTGAAAGTTCTTTCAGTGGAATCAAGACAAGGTGACAAGGAGTTCATCGCTGAGCTATCAGTCTGCAACATTAGTCACGAAAATTTGGTGAAGTTGAACGGCGGTTGCATTGAAGGCCGTCGTAGAATTCTTGTTTACGATTACATGGAACACAACAGCCTCGCTCGTATCATGCTAGCTGTTCCTCTTGTTCTTGATGAGGGTAGAGGTTATCTTGCTCCGGAATATGCGGTCACCGGTCATCTAACGCGGAAATCAGACATCTACAGTTACGGAGTACTGATTTTGCAGATAGTCAGTGGACGATCGGCAGTTGACTTCGATCTAGAACTAGGAGAACACTATCTTGTCCAAAAGGCATGGGAAATGCACATGGACAACAGACTCTTAGATATAGCGGACTCGACACTTGAGCATGATGGCAACTTTTCAGAGAAGGAAGCTCTCCATTTTCTAAAGATTGATGCAACCTTGTTGTCTCTGGTGAGCAATTTGACACCCCACATGGACCCATTGCAGGAGTCAAAGGCAATGAGCGTGTCCTTGAGCTCTTGGAGAGCCTTCATCTCCGAGGACTTGAGACTCGAGATGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

225

Amino Acids

25.4

Weight (kDa)

5.37

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	21 - 85	6.3e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15760 FvH4_7g19720 FvH4_7g19720
malus_domestica	MD01G1109700.v1.1 MD04G1098900.v1.1 MD12G1119500.v1.1
prunus_persica	Prupe.2G214600_v2.0.a1 Prupe.6G237400_v2.0.a1 Prupe.6G237400_v2.0.a1
pyrus_communis	pycom01g13680 pycom04g09390 pycom12g11850
rosa_chinensis	RchiOBHm_Chr1g0363561
rosa_laevigata	RLG00000027557
rosa_multiflora	Rmu_sc0000548.1_g000001 Rmu_sc0004871.1_g000014 Rmu_ssc0000433.1_g000008
rosa_roxburghii	Rroxscaffold_4G00293080 Rroxscaffold_6G00411830
rosa_rugosa	Rorug01G0308100 Rorug03G0102000 Rorug03G0102100
rosa_samantha	Rh1BG280300 Rh1CG296400 Rh1DG311500 Rh3DG200700
rosa_wichuraiana	Rw1G028100 Rw3G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	331
AccIII	TCCGGA	1 cut(s)	301
AciI	CCGC	5 cut(s)	35, 183, 311, 331, 479
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	163, 207
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	598
AgeI	ACCGGT	1 cut(s)	317
AgsI	TTSAA	2 cut(s)	178, 194
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AluBI	AGCT	4 cut(s)	136, 260, 524, 630
AluI	AGCT	4 cut(s)	136, 260, 524, 630
Alw21I	GWGCWC	1 cut(s)	632
Alw26I	GTCTC	2 cut(s)	564, 655
Ama87I	CYCGRG	1 cut(s)	665
Aor13HI	TCCGGA	1 cut(s)	301
AoxI	GGCC	2 cut(s)	78, 196
ApoI	RAATTY	2 cut(s)	163, 207
AsiGI	ACCGGT	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	589
AsuHPI	GGTGA	5 cut(s)	40, 125, 181, 307, 577
AsuNHI	GCTAGC	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	665
AvaII	GGWCC	1 cut(s)	589
BanII	GRGCYC	1 cut(s)	632
Bbv12I	GWGCWC	1 cut(s)	632
BccI	CCATC	1 cut(s)	494
BceAI	ACGGC	3 cut(s)	65, 183, 196
BcoDI	GTCTC	2 cut(s)	564, 655
BfaI	CTAG	3 cut(s)	257, 407, 413
BfmI	CTRYAG	1 cut(s)	346
BfoI	RGCGCY	1 cut(s)	47
BlpI	GCTNAGC	1 cut(s)	132
BmcAI	AGTACT	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	589
BmeT110I	CYCGRG	1 cut(s)	665
BmgT120I	GGNCC	1 cut(s)	589
BmiI	GGNNCC	1 cut(s)	591
BmsI	GCATC	1 cut(s)	535
BmtI	GCTAGC	1 cut(s)	260
Bpu1102I	GCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	2 cut(s)	512, 646
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	651
BsaWI	WCCGGW	2 cut(s)	301, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	598
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	1 cut(s)	17
Bse3DI	GCAATG	2 cut(s)	593, 618
Bse8I	GATNNNNATC	1 cut(s)	8
BseAI	TCCGGA	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	651
BseGI	GGATG	1 cut(s)	9
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	598
BseMI	GCAATG	2 cut(s)	593, 618
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	17
Bsh1236I	CGCG	1 cut(s)	331
Bsh1285I	CGRYCG	1 cut(s)	389
BshFI	GGCC	2 cut(s)	80, 198
BshTI	ACCGGT	1 cut(s)	317
BsiEI	CGRYCG	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	632
BsiHKCI	CYCGRG	1 cut(s)	665
BsiSI	CCGG	2 cut(s)	302, 318
BslI	CCNNNNNNNGG	1 cut(s)	598
BsmAI	GTCTC	2 cut(s)	564, 655
BsnI	GGCC	2 cut(s)	80, 198
BsoBI	CYCGRG	1 cut(s)	665
Bsp1286I	GDGCHC	1 cut(s)	632
Bsp13I	TCCGGA	1 cut(s)	301
Bsp143I	GATC	2 cut(s)	386, 403
Bsp1720I	GCTNAGC	1 cut(s)	132
BspACI	CCGC	5 cut(s)	35, 183, 311, 331, 479
BspANI	GGCC	2 cut(s)	80, 198
BspCNI	CTCAG	1 cut(s)	124
BspEI	TCCGGA	1 cut(s)	301
BspFNI	CGCG	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	591
BspOI	GCTAGC	1 cut(s)	260
BsrDI	GCAATG	2 cut(s)	593, 618
BsrFI	RCCGGY	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	651
BssMI	GATC	2 cut(s)	386, 403
Bst4CI	ACNGT	1 cut(s)	350
Bst6I	CTCTTC	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	2 cut(s)	132, 469
BstEII	GGTNACC	1 cut(s)	313
BstF5I	GGATG	1 cut(s)	9
BstFNI	CGCG	1 cut(s)	331
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	2 cut(s)	389, 406
BstMAI	GTCTC	2 cut(s)	564, 655
BstMBI	GATC	2 cut(s)	386, 403
BstMCI	CGRYCG	1 cut(s)	389
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 195
BstPI	GGTNACC	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	346
BstUI	CGCG	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	80, 198
BtgZI	GCGATG	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	9
BtsIMutI	CAGTG	2 cut(s)	102, 385
Cac8I	GCNNGC	1 cut(s)	258
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	1 cut(s)	589
Csp6I	GTAC	1 cut(s)	359
CspAI	ACCGGT	1 cut(s)	317
CviAII	CATG	6 cut(s)	226, 253, 441, 454, 497, 586
CviJI	RGCY	8 cut(s)	80, 136, 198, 240, 260, 524, 630, 641
CviKI_1	RGCY	8 cut(s)	80, 136, 198, 240, 260, 524, 630, 641
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	2 cut(s)	132, 469
DpnI	GATC	2 cut(s)	388, 405
DpnII	GATC	2 cut(s)	386, 403
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	630
Eco24I	GRGCYC	1 cut(s)	632
Eco47I	GGWCC	1 cut(s)	589
Eco53kI	GAGCTC	1 cut(s)	630
Eco88I	CYCGRG	1 cut(s)	665
Eco91I	GGTNACC	1 cut(s)	313
EcoICRI	GAGCTC	1 cut(s)	630
EcoO65I	GGTNACC	1 cut(s)	313
EcoRI	GAATTC	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	632
FaeI	CATG	6 cut(s)	229, 256, 444, 457, 500, 589
FaiI	YATR	8 cut(s)	227, 254, 309, 442, 455, 476, 498, 587
FatI	CATG	6 cut(s)	225, 252, 440, 453, 496, 585
FriOI	GRGCYC	1 cut(s)	632
FspBI	CTAG	3 cut(s)	257, 407, 413
GlaI	GCGC	1 cut(s)	45
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	80, 198
HapII	CCGG	2 cut(s)	302, 318
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	6 cut(s)	229, 256, 444, 457, 500, 589
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HinfI	GANTC	5 cut(s)	101, 465, 482, 602, 663
HpaII	CCGG	2 cut(s)	302, 318
HphI	GGTGA	5 cut(s)	40, 125, 181, 307, 577
Hpy166II	GTNNAC	4 cut(s)	51, 217, 383, 397
Hpy188I	TCNGA	3 cut(s)	340, 514, 652
Hpy188III	TCNNGA	6 cut(s)	105, 158, 275, 302, 407, 667
Hpy8I	GTNNAC	4 cut(s)	51, 217, 383, 397
Hpy99I	CGWCG	1 cut(s)	204
HpyAV	CCTTC	4 cut(s)	25, 188, 511, 652
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4V	TGCA	6 cut(s)	147, 189, 370, 451, 548, 598
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 195
HpyF3I	CTNAG	2 cut(s)	132, 469
Hsp92II	CATG	6 cut(s)	229, 256, 444, 457, 500, 589
HspAI	GCGC	1 cut(s)	44
Kpn2I	TCCGGA	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	386, 403
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	5 cut(s)	30, 315, 331, 548, 584
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	3 cut(s)	257, 407, 413
MaeIII	GTNAC	4 cut(s)	113, 155, 313, 350
MalI	GATC	2 cut(s)	388, 405
MboI	GATC	2 cut(s)	386, 403
MboII	GAAGA	1 cut(s)	81
MhlI	GDGCHC	1 cut(s)	632
MluCI	AATT	4 cut(s)	23, 163, 207, 571
MlyI	GAGTC	4 cut(s)	459, 476, 611, 657
MnlI	CCTC	6 cut(s)	24, 251, 274, 276, 281, 646
MroI	TCCGGA	1 cut(s)	301
MseI	TTAA	1 cut(s)	59
MspI	CCGG	2 cut(s)	302, 318
MvnI	CGCG	1 cut(s)	331
MwoI	GCNNNNNNNGC	2 cut(s)	41, 195
NdeII	GATC	2 cut(s)	386, 403
NheI	GCTAGC	1 cut(s)	256
NlaIII	CATG	6 cut(s)	229, 256, 444, 457, 500, 589
NlaIV	GGNNCC	1 cut(s)	591
NmuCI	GTSAC	3 cut(s)	113, 155, 313
PaeR7I	CTCGAG	1 cut(s)	665
PfeI	GAWTC	1 cut(s)	101
PinAI	ACCGGT	1 cut(s)	317
Ple19I	CGATCG	1 cut(s)	389
PleI	GAGTC	4 cut(s)	459, 476, 610, 657
PpsI	GAGTC	4 cut(s)	459, 476, 610, 657
Psp124BI	GAGCTC	1 cut(s)	632
PspEI	GGTNACC	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	591
PspPI	GGNCC	1 cut(s)	589
PvuI	CGATCG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
SacI	GAGCTC	1 cut(s)	632
SaqAI	TTAA	1 cut(s)	59
Sau3AI	GATC	2 cut(s)	386, 403
Sau96I	GGNCC	1 cut(s)	589
ScaI	AGTACT	1 cut(s)	360
SchI	GAGTC	4 cut(s)	459, 476, 611, 657
SduI	GDGCHC	1 cut(s)	632
SetI	ASST	7 cut(s)	115, 138, 262, 292, 526, 554, 632
SfaNI	GCATC	1 cut(s)	535
SfcI	CTRYAG	1 cut(s)	346
Sfr274I	CTCGAG	1 cut(s)	665
SinI	GGWCC	1 cut(s)	589
SlaI	CTCGAG	1 cut(s)	665
SmlI	CTYRAG	4 cut(s)	491, 625, 658, 665
SmoI	CTYRAG	4 cut(s)	491, 625, 658, 665
Sse9I	AATT	4 cut(s)	23, 163, 207, 571
SsiI	CCGC	5 cut(s)	35, 183, 311, 331, 479
SspMI	CTAG	3 cut(s)	257, 407, 413
SstI	GAGCTC	1 cut(s)	632
TaaI	ACNGT	1 cut(s)	350
TaqI	TCGA	3 cut(s)	402, 485, 666
TasI	AATT	4 cut(s)	23, 163, 207, 571
TatI	WGTACW	1 cut(s)	358
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	2 cut(s)	102, 385
TseFI	GTSAC	3 cut(s)	113, 155, 313
Tsp45I	GTSAC	3 cut(s)	113, 155, 313
TspDTI	ATGAA	2 cut(s)	115, 634
TspGWI	ACGGA	2 cut(s)	81, 369
TspRI	CASTG	2 cut(s)	102, 385
VpaK11BI	GGWCC	1 cut(s)	589
XapI	RAATTY	2 cut(s)	163, 207
XbaI	TCTAGA	1 cut(s)	406
XhoI	CTCGAG	1 cut(s)	665
XspI	CTAG	3 cut(s)	257, 407, 413
ZrmI	AGTACT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.