Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005919

Physical Location & Seq

Genomic Coordinates Forward (+)

57001117 .. 57006910

Gene Structure 5794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG296400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAAGTTCTCTTTTTTCTGCTCAAAGTGTTTATTTCCCCCAGCAGGAATCATCGATGACAGCAACTTAGCCGTTGTTCCTCTTGTTCTTGATGAGGGTAGAGGTTATATTGCTCCGGAATATGCGGTCACCGGTCATCTAACGCGGAAATCAGACGTGTACAGTTACGGAGTACTGATTTTGCAGATAGTCAGTGGACGATCGGCAGTTGACTTCGATCTAGAACTTGGAGAACACTATCTTGTCCAAAAGGCATGGGAAATGCACATGGACAACAGACTATTAGATATAGCGGACTCGACACTTCAGCATGATGGCAACTTTTCAGAGAAGGAAGCTCTCCATTTTCTAAAGGTGGGTCTACATTGTGTACAAGAGAAATGCAACCTCAGGCCAAAAATGTCAGCAGCCATTGAAATGATGATGATCGATCAGAATGATCAGATCAAAGTGAATGATTTCAACAACGTGGAAATAAGGCAGCCAGGAGTGATCATCAATAATATGGACTTGAAAATAGCGCAGAGGAAGAATGAAAGAAGCTCAAAATTAAGCATTAGTAGCATGCAATGCCCACAAGTGTACCCTTTTAATACTAGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

201

Amino Acids

22.81

Weight (kDa)

5.85

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15760 FvH4_7g19720 FvH4_7g19720
malus_domestica	MD01G1109700.v1.1 MD04G1098900.v1.1 MD12G1119500.v1.1
prunus_persica	Prupe.2G214600_v2.0.a1 Prupe.6G237400_v2.0.a1 Prupe.6G237400_v2.0.a1
pyrus_communis	pycom01g13680 pycom04g09390 pycom12g11850
rosa_chinensis	RchiOBHm_Chr1g0363561
rosa_laevigata	RLG00000027557
rosa_multiflora	Rmu_sc0000548.1_g000001 Rmu_sc0004871.1_g000014 Rmu_ssc0000433.1_g000008
rosa_roxburghii	Rroxscaffold_4G00293080 Rroxscaffold_6G00411830
rosa_rugosa	Rorug01G0308100 Rorug03G0102000 Rorug03G0102100
rosa_samantha	Rh1BG280300 Rh1CG296400 Rh1DG311500 Rh3DG200700
rosa_wichuraiana	Rw1G028100 Rw3G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	361
AccII	CGCG	1 cut(s)	145
AccIII	TCCGGA	1 cut(s)	115
AciI	CCGC	3 cut(s)	125, 145, 293
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	4 cut(s)	161, 174, 372, 584
AfiI	CCNNNNNNNGG	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	156
AgeI	ACCGGT	1 cut(s)	131
AgsI	TTSAA	3 cut(s)	416, 463, 514
AjiI	CACGTC	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	484
AluBI	AGCT	2 cut(s)	338, 543
AluI	AGCT	2 cut(s)	338, 543
Aor13HI	TCCGGA	1 cut(s)	115
AoxI	GGCC	1 cut(s)	392
ApeKI	GCWGC	2 cut(s)	407, 481
AsiGI	ACCGGT	1 cut(s)	131
Asp700I	GAANNNNTTC	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	523
AsuHPI	GGTGA	1 cut(s)	121
AxyI	CCTNAGG	1 cut(s)	389
BaeI	ACNNNNGTAYC	2 cut(s)	566, 599
BbvI	GCAGC	2 cut(s)	419, 493
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	1 cut(s)	486
BclI	TGATCA	2 cut(s)	439, 492
BfaI	CTAG	2 cut(s)	221, 597
BisI	GCNGC	2 cut(s)	408, 482
BlsI	GCNGC	2 cut(s)	409, 483
BmcAI	AGTACT	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	486
BmgBI	CACGTC	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	486
Bsa29I	ATCGAT	2 cut(s)	54, 429
BsaBI	GATNNNNATC	1 cut(s)	425
BsaWI	WCCGGW	2 cut(s)	115, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse118I	RCCGGY	1 cut(s)	131
Bse21I	CCTNAGG	1 cut(s)	389
Bse3DI	GCAATG	1 cut(s)	575
Bse8I	GATNNNNATC	1 cut(s)	425
BseAI	TCCGGA	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	486
BseCI	ATCGAT	2 cut(s)	54, 429
BseJI	GATNNNNATC	1 cut(s)	425
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	575
BseMII	CTCAG	1 cut(s)	403
BseXI	GCAGC	2 cut(s)	419, 493
BseYI	CCCAGC	1 cut(s)	40
Bsh1236I	CGCG	1 cut(s)	145
Bsh1285I	CGRYCG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	394
BshTI	ACCGGT	1 cut(s)	131
BshVI	ATCGAT	2 cut(s)	54, 429
BsiEI	CGRYCG	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	116, 132
BslI	CCNNNNNNNGG	1 cut(s)	44
BsnI	GGCC	1 cut(s)	394
Bsp13I	TCCGGA	1 cut(s)	115
Bsp1407I	TGTACA	2 cut(s)	159, 370
Bsp143I	GATC	7 cut(s)	200, 217, 426, 430, 439, 444, 492
BspACI	CCGC	3 cut(s)	125, 145, 293
BspANI	GGCC	1 cut(s)	394
BspCNI	CTCAG	1 cut(s)	402
BspDI	ATCGAT	2 cut(s)	54, 429
BspEI	TCCGGA	1 cut(s)	115
BspFNI	CGCG	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	575
BsrFI	RCCGGY	1 cut(s)	131
BsrGI	TGTACA	2 cut(s)	159, 370
BssAI	RCCGGY	1 cut(s)	131
BssMI	GATC	7 cut(s)	200, 217, 426, 430, 439, 444, 492
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	1 cut(s)	164
BstAPI	GCANNNNNTGC	1 cut(s)	570
BstAUI	TGTACA	2 cut(s)	159, 370
BstC8I	GCNNGC	1 cut(s)	566
BstDEI	CTNAG	2 cut(s)	67, 389
BstEII	GGTNACC	1 cut(s)	127
BstFNI	CGCG	1 cut(s)	145
BstHHI	GCGC	1 cut(s)	523
BstKTI	GATC	7 cut(s)	203, 220, 429, 433, 442, 447, 495
BstMBI	GATC	7 cut(s)	200, 217, 426, 430, 439, 444, 492
BstMCI	CGRYCG	1 cut(s)	203
BstMWI	GCNNNNNNNGC	2 cut(s)	561, 570
BstNI	CCWGG	1 cut(s)	486
BstNSI	RCATGY	1 cut(s)	568
BstPI	GGTNACC	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	484
BstUI	CGCG	1 cut(s)	145
BstV1I	GCAGC	2 cut(s)	419, 493
Bsu15I	ATCGAT	2 cut(s)	54, 429
Bsu36I	CCTNAGG	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	394
BsuTUI	ATCGAT	2 cut(s)	54, 429
BtrI	CACGTC	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	566
CfoI	GCGC	1 cut(s)	523
Cfr10I	RCCGGY	1 cut(s)	131
ClaI	ATCGAT	2 cut(s)	54, 429
Csp6I	GTAC	4 cut(s)	160, 173, 371, 583
CspAI	ACCGGT	1 cut(s)	131
CviAII	CATG	4 cut(s)	255, 268, 311, 565
CviJI	RGCY	6 cut(s)	71, 338, 394, 410, 484, 543
CviKI_1	RGCY	6 cut(s)	71, 338, 394, 410, 484, 543
CviQI	GTAC	4 cut(s)	160, 173, 371, 583
DdeI	CTNAG	2 cut(s)	67, 389
DpnI	GATC	7 cut(s)	202, 219, 428, 432, 441, 446, 494
DpnII	GATC	7 cut(s)	200, 217, 426, 430, 439, 444, 492
Eco57I	CTGAAG	1 cut(s)	290
Eco81I	CCTNAGG	1 cut(s)	389
Eco91I	GGTNACC	1 cut(s)	127
EcoO65I	GGTNACC	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	484
FaeI	CATG	4 cut(s)	258, 271, 314, 568
FaiI	YATR	8 cut(s)	108, 123, 256, 269, 290, 312, 506, 566
FatI	CATG	4 cut(s)	254, 267, 310, 564
FbaI	TGATCA	2 cut(s)	439, 492
FblI	GTMKAC	1 cut(s)	361
Fnu4HI	GCNGC	2 cut(s)	408, 482
Fsp4HI	GCNGC	2 cut(s)	408, 482
FspBI	CTAG	2 cut(s)	221, 597
GlaI	GCGC	1 cut(s)	522
GluI	GCNGC	2 cut(s)	408, 482
GsaI	CCCAGC	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	394
HapII	CCGG	2 cut(s)	116, 132
HhaI	GCGC	1 cut(s)	523
Hin1II	CATG	4 cut(s)	258, 271, 314, 568
Hin6I	GCGC	1 cut(s)	521
HinP1I	GCGC	1 cut(s)	521
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	48, 296
HpaII	CCGG	2 cut(s)	116, 132
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	6 cut(s)	160, 197, 211, 362, 371, 583
Hpy188I	TCNGA	4 cut(s)	154, 328, 435, 444
Hpy188III	TCNNGA	3 cut(s)	89, 116, 221
Hpy8I	GTNNAC	6 cut(s)	160, 197, 211, 362, 371, 583
HpyAV	CCTTC	1 cut(s)	325
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	2 cut(s)	156, 468
HpyCH4V	TGCA	4 cut(s)	184, 265, 384, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	561, 570
HpyF3I	CTNAG	2 cut(s)	67, 389
HpySE526I	ACGT	2 cut(s)	156, 468
Hsp92II	CATG	4 cut(s)	258, 271, 314, 568
HspAI	GCGC	1 cut(s)	521
Kpn2I	TCCGGA	1 cut(s)	115
Ksp22I	TGATCA	2 cut(s)	439, 492
Kzo9I	GATC	7 cut(s)	200, 217, 426, 430, 439, 444, 492
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	7 cut(s)	30, 54, 129, 145, 376, 471, 498
Lsp1109I	GCAGC	2 cut(s)	419, 493
MaeI	CTAG	2 cut(s)	221, 597
MaeII	ACGT	2 cut(s)	156, 468
MaeIII	GTNAC	2 cut(s)	127, 164
MalI	GATC	7 cut(s)	202, 219, 428, 432, 441, 446, 494
MboI	GATC	7 cut(s)	200, 217, 426, 430, 439, 444, 492
MboII	GAAGA	1 cut(s)	541
MluCI	AATT	1 cut(s)	548
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	5 cut(s)	88, 90, 95, 398, 519
MroI	TCCGGA	1 cut(s)	115
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	3 cut(s)	551, 591, 604
MslI	CAYNNNNRTG	1 cut(s)	416
MspI	CCGG	2 cut(s)	116, 132
MspR9I	CCNGG	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	486
MvnI	CGCG	1 cut(s)	145
MwoI	GCNNNNNNNGC	2 cut(s)	561, 570
NdeII	GATC	7 cut(s)	200, 217, 426, 430, 439, 444, 492
NlaIII	CATG	4 cut(s)	258, 271, 314, 568
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	1 cut(s)	568
PaeI	GCATGC	1 cut(s)	568
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	48
PinAI	ACCGGT	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	409, 483
Ple19I	CGATCG	1 cut(s)	203
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	484
PspEI	GGTNACC	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	484
PvuI	CGATCG	1 cut(s)	203
RsaI	GTAC	4 cut(s)	161, 174, 372, 584
RsaNI	GTAC	4 cut(s)	160, 173, 371, 583
RseI	CAYNNNNRTG	1 cut(s)	416
SaqAI	TTAA	3 cut(s)	551, 591, 604
SatI	GCNGC	2 cut(s)	408, 482
Sau3AI	GATC	7 cut(s)	200, 217, 426, 430, 439, 444, 492
ScaI	AGTACT	1 cut(s)	174
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	486
SetI	ASST	7 cut(s)	106, 159, 340, 357, 390, 471, 545
SmiMI	CAYNNNNRTG	1 cut(s)	416
SphI	GCATGC	1 cut(s)	568
Sse9I	AATT	1 cut(s)	548
SsiI	CCGC	3 cut(s)	125, 145, 293
SspMI	CTAG	2 cut(s)	221, 597
StyD4I	CCNGG	1 cut(s)	484
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	2 cut(s)	159, 471
TaqI	TCGA	4 cut(s)	54, 216, 299, 429
TasI	AATT	1 cut(s)	548
TatI	WGTACW	3 cut(s)	159, 172, 370
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	3 cut(s)	551, 591, 604
Tru9I	TTAA	3 cut(s)	551, 591, 604
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	2 cut(s)	407, 481
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	17, 549
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	199
XbaI	TCTAGA	1 cut(s)	220
XceI	RCATGY	1 cut(s)	568
XmiI	GTMKAC	1 cut(s)	361
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	2 cut(s)	221, 597
ZrmI	AGTACT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.