Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005919

Physical Location & Seq

Genomic Coordinates Forward (+)

14081869 .. 14085626

Gene Structure 3758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g13680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGAAATTGGAGAACACTATCTTGTCGAAAAGGCATGGGAAATGTACAAGGGAAAGAAGCTTGTAGATCTAGTGGACTCTTCTCTCGAACTTGACGGAAACATTTCAGAAAAAGAAGCCGTCCAATTCCTAAAGGTGGGTCTGCTTTGTGTACAAGAAAAATCCAGCCTCCGACCCCGCATGTCGACAGCCATTAAGCTGATGACGACGAATGAGATCAACGTTAATAACATGAAGGTAGGCGAGCCAGGAGTCATTACTGACAATATGGACCTCAAATTAGCCCAAGGGACTGAGAGAAGCTCACCGCCAGCATGCAAAGCCCCCAAATCTATCTTTATTAAAAGAAAAATTAGAAATTTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

123

Amino Acids

13.69

Weight (kDa)

8.89

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15760 FvH4_7g19720 FvH4_7g19720
malus_domestica	MD01G1109700.v1.1 MD04G1098900.v1.1 MD12G1119500.v1.1
prunus_persica	Prupe.2G214600_v2.0.a1 Prupe.6G237400_v2.0.a1 Prupe.6G237400_v2.0.a1
pyrus_communis	pycom01g13680 pycom04g09390 pycom12g11850
rosa_chinensis	RchiOBHm_Chr1g0363561
rosa_laevigata	RLG00000027557
rosa_multiflora	Rmu_sc0000548.1_g000001 Rmu_sc0004871.1_g000014 Rmu_ssc0000433.1_g000008
rosa_roxburghii	Rroxscaffold_4G00293080 Rroxscaffold_6G00411830
rosa_rugosa	Rorug01G0308100 Rorug03G0102000 Rorug03G0102100
rosa_samantha	Rh1BG280300 Rh1CG296400 Rh1DG311500 Rh3DG200700
rosa_wichuraiana	Rw1G028100 Rw3G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	185
AciI	CCGC	2 cut(s)	178, 308
AclI	AACGTT	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	358
AfaI	GTAC	2 cut(s)	47, 153
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	364
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	3 cut(s)	61, 199, 303
AluI	AGCT	3 cut(s)	61, 199, 303
ApoI	RAATTY	1 cut(s)	358
Asp700I	GAANNNNTTC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	297
AvaII	GGWCC	1 cut(s)	271
BceAI	ACGGC	1 cut(s)	104
BciT130I	CCWGG	1 cut(s)	249
BfaI	CTAG	1 cut(s)	71
BglII	AGATCT	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmrFI	CCNGG	1 cut(s)	249
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BsaJI	CCNNGG	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	286
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	304
Bsp1407I	TGTACA	2 cut(s)	45, 151
Bsp143I	GATC	2 cut(s)	67, 216
BspACI	CCGC	2 cut(s)	178, 308
BspCNI	CTCAG	1 cut(s)	286
BsrGI	TGTACA	2 cut(s)	45, 151
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	2 cut(s)	67, 216
BssT1I	CCWWGG	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	249
Bst6I	CTCTTC	1 cut(s)	85
BstAUI	TGTACA	2 cut(s)	45, 151
BstC8I	GCNNGC	3 cut(s)	245, 312, 316
BstDEI	CTNAG	1 cut(s)	294
BstKTI	GATC	2 cut(s)	70, 219
BstMBI	GATC	2 cut(s)	67, 216
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	1 cut(s)	249
BstNSI	RCATGY	2 cut(s)	184, 318
BstSCI	CCNGG	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
Cac8I	GCNNGC	3 cut(s)	245, 312, 316
Cfr13I	GGNCC	1 cut(s)	271
Csp6I	GTAC	2 cut(s)	46, 152
CviAII	CATG	4 cut(s)	36, 181, 232, 315
CviJI	RGCY	9 cut(s)	61, 119, 168, 191, 199, 247, 284, 303, 323
CviKI_1	RGCY	9 cut(s)	61, 119, 168, 191, 199, 247, 284, 303, 323
CviQI	GTAC	2 cut(s)	46, 152
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	2 cut(s)	69, 218
DpnII	GATC	2 cut(s)	67, 216
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	4 cut(s)	39, 184, 235, 318
FaiI	YATR	5 cut(s)	37, 182, 233, 269, 316
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	4 cut(s)	35, 180, 231, 314
FauI	CCCGC	1 cut(s)	185
FblI	GTMKAC	1 cut(s)	185
FspBI	CTAG	1 cut(s)	71
Hin1II	CATG	4 cut(s)	39, 184, 235, 318
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	2 cut(s)	77, 252
HphI	GGTGA	1 cut(s)	297
Hpy166II	GTNNAC	3 cut(s)	76, 152, 186
Hpy188I	TCNGA	2 cut(s)	109, 173
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	3 cut(s)	76, 152, 186
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	4 cut(s)	39, 184, 235, 318
Kzo9I	GATC	2 cut(s)	67, 216
LpnPI	CCDG	4 cut(s)	178, 234, 261, 324
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	222
MalI	GATC	2 cut(s)	69, 218
MboI	GATC	2 cut(s)	67, 216
MboII	GAAGA	1 cut(s)	72
MflI	RGATCY	1 cut(s)	67
MluCI	AATT	6 cut(s)	6, 125, 278, 351, 358, 364
MlyI	GAGTC	2 cut(s)	71, 261
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	2 cut(s)	179, 284
MroXI	GAANNNNTTC	1 cut(s)	103
MseI	TTAA	4 cut(s)	195, 225, 342, 367
MspR9I	CCNGG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	320
NdeII	GATC	2 cut(s)	67, 216
NlaIII	CATG	4 cut(s)	39, 184, 235, 318
NspI	RCATGY	2 cut(s)	184, 318
PaeI	GCATGC	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	103
PleI	GAGTC	2 cut(s)	71, 260
PpsI	GAGTC	2 cut(s)	71, 260
Psp1406I	AACGTT	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	2 cut(s)	47, 153
RsaNI	GTAC	2 cut(s)	46, 152
SalI	GTCGAC	1 cut(s)	184
SaqAI	TTAA	4 cut(s)	195, 225, 342, 367
Sau3AI	GATC	2 cut(s)	67, 216
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	2 cut(s)	71, 261
ScrFI	CCNGG	1 cut(s)	249
SetI	ASST	7 cut(s)	63, 138, 201, 225, 240, 276, 305
SinI	GGWCC	1 cut(s)	271
SphI	GCATGC	1 cut(s)	318
Sse9I	AATT	6 cut(s)	6, 125, 278, 351, 358, 364
SsiI	CCGC	2 cut(s)	178, 308
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	1 cut(s)	286
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	3 cut(s)	27, 87, 185
TasI	AATT	6 cut(s)	6, 125, 278, 351, 358, 364
TatI	WGTACW	2 cut(s)	45, 151
Tru1I	TTAA	4 cut(s)	195, 225, 342, 367
Tru9I	TTAA	4 cut(s)	195, 225, 342, 367
TspDTI	ATGAA	1 cut(s)	248
TspGWI	ACGGA	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	1 cut(s)	358
XceI	RCATGY	2 cut(s)	184, 318
XmiI	GTMKAC	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	103
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.