Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005919

Physical Location & Seq

Genomic Coordinates Forward (+)

54954389 .. 54957761

Gene Structure 3373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58831

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGATTTTCATCCCTCCAGTAAAATTGGTGAAGGCGGATTTGGCGCTGTTTACAAGATTAAATGACGGAAGAGATGTGGCCGTGAAAGTTCTTTCAGTCGAATCAAGACAAGGTGACAAGGAGTTCATGGCTGAGCTATCATCAGTCTCCAACATTAGTCAGGAAAATTTGGTGAAGTTGAACGGCGGTTGCATTGAAGGCCGTCGTAGAATTCTTGTTTACGATTACATGGAACACAACAGCCTCGCTCGTATCTTGCTAGATGACAAAGCCAGATCAAAATTGGATTGGAGAGTGCGGAAAGAAATTTGTATAGAAATTGCAAGGGGACTTGTCCATATTCATGAAGAGGTTAAACCGCACATTGTACACAGAGACATCAAAGCAAGCAACATACTTTTGGAGAAGAACTTTCATCCACGGATTTCAGATTTTGGATTATCGAAGCTCTTTCCAGAACATGTTTCTCACATTACTACACGAGTGGCCGGAACTTTAGGTTATATTGCTCCGGAATATGCGGTCACCGGTCATCTAACGCGGAAATCAGACGTGTACAGTTACGGAGTACTGATTTTGCAGATAGTCAGTGGACGATCGGCAGTTGACTTCGATCTAGAACTTGGAGAACACTATCTTGTCCAAAAGGCATGGGAAATGCACATGGACAACAGACTCTTAGATATAGCGGACTCGACACTTCAGCATGATGGCAACTTTTCAGAGAAGGAAGCTCTCCATTTTCTAAAGGTGGGTCTACATTGTGTACAAGAGAAATGCAACCTCAGGCCAAAAATGTCAGCAGCCATTGAAATGATGATGATCGATCAGAATGATCAGATCAAAGTGAATGATTTCAACAACGTGGAAATAAGGCAGCCAGGAGTGATCATCAATAATATGGACTTGAAAATAGCGCGGAGGAAGAATGAAAGAAGCTCAAAATTAAGCATTAGTAGCATGCAATGCCCACAAGTGTACCCTTTTAATACTAGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

333

Amino Acids

38.07

Weight (kDa)

8.2

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	19 - 269	1e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	21 - 217	3.7e-36	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15760 FvH4_7g19720 FvH4_7g19720
malus_domestica	MD01G1109700.v1.1 MD04G1098900.v1.1 MD12G1119500.v1.1
prunus_persica	Prupe.2G214600_v2.0.a1 Prupe.6G237400_v2.0.a1 Prupe.6G237400_v2.0.a1
pyrus_communis	pycom01g13680 pycom04g09390 pycom12g11850
rosa_chinensis	RchiOBHm_Chr1g0363561
rosa_laevigata	RLG00000027557
rosa_multiflora	Rmu_sc0000548.1_g000001 Rmu_sc0004871.1_g000014 Rmu_ssc0000433.1_g000008
rosa_roxburghii	Rroxscaffold_4G00293080 Rroxscaffold_6G00411830
rosa_rugosa	Rorug01G0308100 Rorug03G0102000 Rorug03G0102100
rosa_samantha	Rh1BG280300 Rh1CG296400 Rh1DG311500 Rh3DG200700
rosa_wichuraiana	Rw1G028100 Rw3G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	757
AccII	CGCG	2 cut(s)	541, 919
AccIII	TCCGGA	1 cut(s)	511
AciI	CCGC	8 cut(s)	35, 186, 298, 359, 521, 541, 689, 919
AcoI	YGGCCR	2 cut(s)	78, 486
AcsI	RAATTY	3 cut(s)	166, 210, 306
AcuI	CTGAAG	1 cut(s)	686
AfaI	GTAC	5 cut(s)	369, 557, 570, 768, 980
AflIII	ACRYGT	2 cut(s)	460, 552
AgeI	ACCGGT	1 cut(s)	527
AgsI	TTSAA	5 cut(s)	181, 197, 812, 859, 910
AjiI	CACGTC	1 cut(s)	553
AjnI	CCWGG	1 cut(s)	880
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AluBI	AGCT	4 cut(s)	136, 448, 734, 939
AluI	AGCT	4 cut(s)	136, 448, 734, 939
Alw26I	GTCTC	2 cut(s)	151, 369
Aor13HI	TCCGGA	1 cut(s)	511
AoxI	GGCC	4 cut(s)	78, 199, 486, 788
ApeKI	GCWGC	2 cut(s)	803, 877
ApoI	RAATTY	3 cut(s)	166, 210, 306
AsiGI	ACCGGT	1 cut(s)	527
Asp700I	GAANNNNTTC	1 cut(s)	854
AspLEI	GCGC	2 cut(s)	46, 919
AsuHPI	GGTGA	4 cut(s)	40, 125, 184, 517
AxyI	CCTNAGG	1 cut(s)	785
BaeI	ACNNNNGTAYC	2 cut(s)	962, 995
BauI	CACGAG	1 cut(s)	480
BbvI	GCAGC	2 cut(s)	815, 889
BccI	CCATC	1 cut(s)	704
BceAI	ACGGC	3 cut(s)	65, 186, 199
BciT130I	CCWGG	1 cut(s)	882
BclI	TGATCA	2 cut(s)	835, 888
BcoDI	GTCTC	2 cut(s)	151, 369
BfaI	CTAG	3 cut(s)	260, 617, 993
BfoI	RGCGCY	1 cut(s)	47
BisI	GCNGC	2 cut(s)	804, 878
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	2 cut(s)	805, 879
BmcAI	AGTACT	1 cut(s)	570
Bme1390I	CCNGG	1 cut(s)	882
BmgBI	CACGTC	1 cut(s)	553
BmrFI	CCNGG	1 cut(s)	882
Bpu1102I	GCTNAGC	1 cut(s)	132
Bsa29I	ATCGAT	1 cut(s)	825
BsaBI	GATNNNNATC	2 cut(s)	8, 821
BsaJI	CCNNGG	1 cut(s)	419
BsaWI	WCCGGW	2 cut(s)	511, 527
Bse118I	RCCGGY	1 cut(s)	527
Bse1I	ACTGG	1 cut(s)	17
Bse21I	CCTNAGG	1 cut(s)	785
Bse3DI	GCAATG	1 cut(s)	971
Bse8I	GATNNNNATC	2 cut(s)	8, 821
BseAI	TCCGGA	1 cut(s)	511
BseBI	CCWGG	1 cut(s)	882
BseCI	ATCGAT	1 cut(s)	825
BseDI	CCNNGG	1 cut(s)	419
BseGI	GGATG	2 cut(s)	9, 415
BseJI	GATNNNNATC	2 cut(s)	8, 821
BseMI	GCAATG	1 cut(s)	971
BseMII	CTCAG	2 cut(s)	123, 799
BseNI	ACTGG	1 cut(s)	17
BseXI	GCAGC	2 cut(s)	815, 889
Bsh1236I	CGCG	2 cut(s)	541, 919
Bsh1285I	CGRYCG	1 cut(s)	599
BshFI	GGCC	4 cut(s)	80, 201, 488, 790
BshTI	ACCGGT	1 cut(s)	527
BshVI	ATCGAT	1 cut(s)	825
BsiEI	CGRYCG	1 cut(s)	599
BsiSI	CCGG	3 cut(s)	489, 512, 528
BslFI	GGGAC	1 cut(s)	342
BsmAI	GTCTC	2 cut(s)	151, 369
BsmFI	GGGAC	1 cut(s)	342
BsnI	GGCC	4 cut(s)	80, 201, 488, 790
Bsp13I	TCCGGA	1 cut(s)	511
Bsp1407I	TGTACA	3 cut(s)	367, 555, 766
Bsp143I	GATC	8 cut(s)	275, 596, 613, 822, 826, 835, 840, 888
Bsp1720I	GCTNAGC	1 cut(s)	132
BspACI	CCGC	8 cut(s)	35, 186, 298, 359, 521, 541, 689, 919
BspANI	GGCC	4 cut(s)	80, 201, 488, 790
BspCNI	CTCAG	2 cut(s)	124, 798
BspDI	ATCGAT	1 cut(s)	825
BspEI	TCCGGA	1 cut(s)	511
BspFNI	CGCG	2 cut(s)	541, 919
BspHI	TCATGA	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	971
BsrFI	RCCGGY	1 cut(s)	527
BsrGI	TGTACA	3 cut(s)	367, 555, 766
BsrI	ACTGG	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	1 cut(s)	419
BssMI	GATC	8 cut(s)	275, 596, 613, 822, 826, 835, 840, 888
BssSI	CACGAG	1 cut(s)	480
Bst2BI	CACGAG	1 cut(s)	480
Bst2UI	CCWGG	1 cut(s)	882
Bst4CI	ACNGT	1 cut(s)	560
Bst6I	CTCTTC	2 cut(s)	64, 342
BstAPI	GCANNNNNTGC	1 cut(s)	966
BstAUI	TGTACA	3 cut(s)	367, 555, 766
BstC8I	GCNNGC	2 cut(s)	388, 962
BstDEI	CTNAG	3 cut(s)	132, 679, 785
BstDSI	CCRYGG	1 cut(s)	419
BstEII	GGTNACC	1 cut(s)	523
BstF5I	GGATG	2 cut(s)	9, 415
BstFNI	CGCG	2 cut(s)	541, 919
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	2 cut(s)	46, 919
BstKTI	GATC	8 cut(s)	278, 599, 616, 825, 829, 838, 843, 891
BstMAI	GTCTC	2 cut(s)	151, 369
BstMBI	GATC	8 cut(s)	275, 596, 613, 822, 826, 835, 840, 888
BstMCI	CGRYCG	1 cut(s)	599
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 198, 957, 966
BstNI	CCWGG	1 cut(s)	882
BstNSI	RCATGY	2 cut(s)	464, 964
BstPI	GGTNACC	1 cut(s)	523
BstSCI	CCNGG	1 cut(s)	880
BstUI	CGCG	2 cut(s)	541, 919
BstV1I	GCAGC	2 cut(s)	815, 889
Bsu15I	ATCGAT	1 cut(s)	825
Bsu36I	CCTNAGG	1 cut(s)	785
BsuRI	GGCC	4 cut(s)	80, 201, 488, 790
BsuTUI	ATCGAT	1 cut(s)	825
BtgI	CCRYGG	1 cut(s)	419
BtrI	CACGTC	1 cut(s)	553
BtsCI	GGATG	2 cut(s)	9, 415
BtsIMutI	CAGTG	1 cut(s)	595
Cac8I	GCNNGC	2 cut(s)	388, 962
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	2 cut(s)	46, 919
Cfr10I	RCCGGY	1 cut(s)	527
ClaI	ATCGAT	1 cut(s)	825
Csp6I	GTAC	5 cut(s)	368, 556, 569, 767, 979
CspAI	ACCGGT	1 cut(s)	527
CviAII	CATG	8 cut(s)	127, 229, 344, 461, 651, 664, 707, 961
CviQI	GTAC	5 cut(s)	368, 556, 569, 767, 979
DdeI	CTNAG	3 cut(s)	132, 679, 785
DpnI	GATC	8 cut(s)	277, 598, 615, 824, 828, 837, 842, 890
DpnII	GATC	8 cut(s)	275, 596, 613, 822, 826, 835, 840, 888
EaeI	YGGCCR	2 cut(s)	78, 486
Eam1104I	CTCTTC	2 cut(s)	64, 342
EarI	CTCTTC	2 cut(s)	64, 342
EciI	GGCGGA	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	686
Eco81I	CCTNAGG	1 cut(s)	785
Eco91I	GGTNACC	1 cut(s)	523
EcoO65I	GGTNACC	1 cut(s)	523
EcoRI	GAATTC	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	880
FaeI	CATG	8 cut(s)	130, 232, 347, 464, 654, 667, 710, 964
FaqI	GGGAC	1 cut(s)	342
FatI	CATG	8 cut(s)	126, 228, 343, 460, 650, 663, 706, 960
FbaI	TGATCA	2 cut(s)	835, 888
FblI	GTMKAC	1 cut(s)	757
Fnu4HI	GCNGC	2 cut(s)	804, 878
FokI	GGATG	1 cut(s)	402
Fsp4HI	GCNGC	2 cut(s)	804, 878
FspBI	CTAG	3 cut(s)	260, 617, 993
GlaI	GCGC	2 cut(s)	45, 918
GluI	GCNGC	2 cut(s)	804, 878
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	4 cut(s)	80, 201, 488, 790
HapII	CCGG	3 cut(s)	489, 512, 528
HhaI	GCGC	2 cut(s)	46, 919
Hin1II	CATG	8 cut(s)	130, 232, 347, 464, 654, 667, 710, 964
Hin6I	GCGC	2 cut(s)	44, 917
HinP1I	GCGC	2 cut(s)	44, 917
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HinfI	GANTC	3 cut(s)	101, 675, 692
HpaII	CCGG	3 cut(s)	489, 512, 528
HphI	GGTGA	4 cut(s)	40, 125, 184, 517
Hpy166II	GTNNAC	9 cut(s)	51, 220, 370, 556, 593, 607, 758, 767, 979
Hpy188I	TCNGA	5 cut(s)	430, 550, 724, 831, 840
Hpy188III	TCNNGA	6 cut(s)	105, 161, 344, 455, 512, 617
Hpy8I	GTNNAC	9 cut(s)	51, 220, 370, 556, 593, 607, 758, 767, 979
Hpy99I	CGWCG	1 cut(s)	207
HpyAV	CCTTC	3 cut(s)	25, 191, 721
HpyCH4III	ACNGT	1 cut(s)	560
HpyCH4IV	ACGT	2 cut(s)	552, 864
HpyCH4V	TGCA	6 cut(s)	192, 323, 580, 661, 780, 964
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 198, 957, 966
HpyF3I	CTNAG	3 cut(s)	132, 679, 785
HpySE526I	ACGT	2 cut(s)	552, 864
Hsp92II	CATG	8 cut(s)	130, 232, 347, 464, 654, 667, 710, 964
HspAI	GCGC	2 cut(s)	44, 917
Kpn2I	TCCGGA	1 cut(s)	511
Ksp22I	TGATCA	2 cut(s)	835, 888
Kzo9I	GATC	8 cut(s)	275, 596, 613, 822, 826, 835, 840, 888
LmnI	GCTCC	1 cut(s)	514
Lsp1109I	GCAGC	2 cut(s)	815, 889
MaeI	CTAG	3 cut(s)	260, 617, 993
MaeII	ACGT	2 cut(s)	552, 864
MaeIII	GTNAC	3 cut(s)	113, 523, 560
MalI	GATC	8 cut(s)	277, 598, 615, 824, 828, 837, 842, 890
MboI	GATC	8 cut(s)	275, 596, 613, 822, 826, 835, 840, 888
MboII	GAAGA	4 cut(s)	81, 359, 418, 937
MluCI	AATT	7 cut(s)	23, 166, 210, 281, 306, 318, 944
MlyI	GAGTC	2 cut(s)	669, 686
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	5 cut(s)	24, 254, 343, 794, 915
MroI	TCCGGA	1 cut(s)	511
MroXI	GAANNNNTTC	1 cut(s)	854
MseI	TTAA	5 cut(s)	59, 354, 947, 987, 1000
MslI	CAYNNNNRTG	2 cut(s)	342, 812
MspI	CCGG	3 cut(s)	489, 512, 528
MspR9I	CCNGG	1 cut(s)	882
MvaI	CCWGG	1 cut(s)	882
MvnI	CGCG	2 cut(s)	541, 919
MwoI	GCNNNNNNNGC	4 cut(s)	41, 198, 957, 966
NdeII	GATC	8 cut(s)	275, 596, 613, 822, 826, 835, 840, 888
NlaIII	CATG	8 cut(s)	130, 232, 347, 464, 654, 667, 710, 964
NmuCI	GTSAC	2 cut(s)	113, 523
NspI	RCATGY	2 cut(s)	464, 964
PaeI	GCATGC	1 cut(s)	964
PagI	TCATGA	1 cut(s)	343
PciI	ACATGT	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	854
PfeI	GAWTC	1 cut(s)	101
PinAI	ACCGGT	1 cut(s)	527
PkrI	GCNGC	2 cut(s)	805, 879
Ple19I	CGATCG	1 cut(s)	599
PleI	GAGTC	2 cut(s)	669, 686
PpsI	GAGTC	2 cut(s)	669, 686
PscI	ACATGT	1 cut(s)	460
Psp6I	CCWGG	1 cut(s)	880
PspEI	GGTNACC	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	880
PvuI	CGATCG	1 cut(s)	599
RsaI	GTAC	5 cut(s)	369, 557, 570, 768, 980
RsaNI	GTAC	5 cut(s)	368, 556, 569, 767, 979
RseI	CAYNNNNRTG	2 cut(s)	342, 812
SaqAI	TTAA	5 cut(s)	59, 354, 947, 987, 1000
SatI	GCNGC	2 cut(s)	804, 878
Sau3AI	GATC	8 cut(s)	275, 596, 613, 822, 826, 835, 840, 888
ScaI	AGTACT	1 cut(s)	570
SchI	GAGTC	2 cut(s)	669, 686
ScrFI	CCNGG	1 cut(s)	882
SmiMI	CAYNNNNRTG	2 cut(s)	342, 812
SphI	GCATGC	1 cut(s)	964
Sse9I	AATT	7 cut(s)	23, 166, 210, 281, 306, 318, 944
SsiI	CCGC	8 cut(s)	35, 186, 298, 359, 521, 541, 689, 919
SspMI	CTAG	3 cut(s)	260, 617, 993
StyD4I	CCNGG	1 cut(s)	880
TaaI	ACNGT	1 cut(s)	560
TaiI	ACGT	2 cut(s)	555, 867
TaqI	TCGA	5 cut(s)	99, 443, 612, 695, 825
TasI	AATT	7 cut(s)	23, 166, 210, 281, 306, 318, 944
TatI	WGTACW	4 cut(s)	367, 555, 568, 766
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	5 cut(s)	59, 354, 947, 987, 1000
Tru9I	TTAA	5 cut(s)	59, 354, 947, 987, 1000
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	2 cut(s)	113, 523
TseI	GCWGC	2 cut(s)	803, 877
Tsp45I	GTSAC	2 cut(s)	113, 523
TspDTI	ATGAA	5 cut(s)	115, 332, 360, 404, 945
TspGWI	ACGGA	3 cut(s)	81, 436, 579
TspRI	CASTG	1 cut(s)	595
XapI	RAATTY	3 cut(s)	166, 210, 306
XbaI	TCTAGA	1 cut(s)	616
XceI	RCATGY	2 cut(s)	464, 964
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	757
XmnI	GAANNNNTTC	1 cut(s)	854
XspI	CTAG	3 cut(s)	260, 617, 993
ZrmI	AGTACT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.