Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005919

Physical Location & Seq

Genomic Coordinates Forward (+)

41670063 .. 41673214

Gene Structure 3152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG280300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGCACGAATGTCCGAGTTATATTTTTACTAAAATGTGCTTTGATTGGACTCTGAAGGGAAGATTAAATAACGGAAGAGATGTGGCCGTGAAAGTTCTTTCAGTGGAATCAAGACAAGGTGACAAGGAGTTCATGGCTGAGCTATCATCAGTCTCCAACATTAGTCACGAAAATTTGGTGAAGTTGAACGGCGGTTGCATTGAAGGCCGTCGTAGAATTCTTGTTTACGATTACATGGAACACAACAGCCTCGCTCGTATCTTGCTAGATGACAAAACCAGATCAAAATTGGATTGGAGAGTGCGGAAAGAAATTTGTATAGGAATTGCAAGGGGACTTGTCCGTATTCATGAAGAGGTTAAACCGCACATTGTACACAGAGACATCAAAGCAAGCAACATACTTTTGGAGAAGAACTTTCATCCAAGAATTTCCGATTTTGGATTATCGAAGCTCTTTCCAGAACACGTTTCTCACATTACTACACGAGTGGCTGGAACTTTAGGTTATCTTGCTCCGGAATATGCGGTCACCGGTCATCTAACACGGAAATCAGACGTGTACAGTTACGGAGTACTGATTTTGCAGATAGTCAGTGGACGATCGGCAGTTGACTTCGATCTAGAACTTGGAGAACACTATCTTGTCCAAAAGGCATGGGAAATGCACATGGACAACAGACTCTTAGATATAGCGGACTCGACACTTCAGCATGACGGCAACTTTTCAGAGAAGGAAGCTCTCCATTTTCTAAAGGTGGGTCTACATTGTGTACAAGAGAAATGCAACCTCAGGCCAAAAATGTCAGCAGCCATTGAAATGATGATGATCGATCAGAATGATCAGATCAAAGTGAATGATTTCAACAACGTGGAAATAAGGCAGCCAGGAGTGATCATCAATAATATGGACTTGAAAATAGCGCGGAGGAAGAATGAAAGAAGCTCAAAATTAAGCATTAGTAGCATGCAATGCCCACAAGTGTACCCTTTTAATACTAGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

335

Amino Acids

38.47

Weight (kDa)

8.58

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	23 - 271	2.5e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	23 - 269	7.8e-36	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15760 FvH4_7g19720 FvH4_7g19720
malus_domestica	MD01G1109700.v1.1 MD04G1098900.v1.1 MD12G1119500.v1.1
prunus_persica	Prupe.2G214600_v2.0.a1 Prupe.6G237400_v2.0.a1 Prupe.6G237400_v2.0.a1
pyrus_communis	pycom01g13680 pycom04g09390 pycom12g11850
rosa_chinensis	RchiOBHm_Chr1g0363561
rosa_laevigata	RLG00000027557
rosa_multiflora	Rmu_sc0000548.1_g000001 Rmu_sc0004871.1_g000014 Rmu_ssc0000433.1_g000008
rosa_roxburghii	Rroxscaffold_4G00293080 Rroxscaffold_6G00411830
rosa_rugosa	Rorug01G0308100 Rorug03G0102000 Rorug03G0102100
rosa_samantha	Rh1BG280300 Rh1CG296400 Rh1DG311500 Rh3DG200700
rosa_wichuraiana	Rw1G028100 Rw3G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	763
AccII	CGCG	1 cut(s)	925
AccIII	TCCGGA	1 cut(s)	517
AciI	CCGC	6 cut(s)	192, 304, 365, 527, 695, 925
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	4 cut(s)	172, 216, 312, 429
AcuI	CTGAAG	2 cut(s)	74, 692
AfaI	GTAC	5 cut(s)	375, 563, 576, 774, 986
AflIII	ACRYGT	2 cut(s)	466, 558
AgeI	ACCGGT	1 cut(s)	533
AgsI	TTSAA	5 cut(s)	187, 203, 818, 865, 916
AjiI	CACGTC	1 cut(s)	559
AjnI	CCWGG	1 cut(s)	886
AluBI	AGCT	4 cut(s)	142, 454, 740, 945
AluI	AGCT	4 cut(s)	142, 454, 740, 945
Alw26I	GTCTC	2 cut(s)	157, 375
Aor13HI	TCCGGA	1 cut(s)	517
AoxI	GGCC	3 cut(s)	84, 205, 794
ApeKI	GCWGC	2 cut(s)	809, 883
ApoI	RAATTY	4 cut(s)	172, 216, 312, 429
AsiGI	ACCGGT	1 cut(s)	533
Asp700I	GAANNNNTTC	1 cut(s)	860
AspLEI	GCGC	1 cut(s)	925
AsuHPI	GGTGA	3 cut(s)	131, 190, 523
AxyI	CCTNAGG	1 cut(s)	791
BaeI	ACNNNNGTAYC	2 cut(s)	968, 1001
BauI	CACGAG	1 cut(s)	486
BbvI	GCAGC	2 cut(s)	821, 895
BceAI	ACGGC	4 cut(s)	71, 192, 205, 733
BciT130I	CCWGG	1 cut(s)	888
BclI	TGATCA	2 cut(s)	841, 894
BcoDI	GTCTC	2 cut(s)	157, 375
BfaI	CTAG	3 cut(s)	266, 623, 999
BisI	GCNGC	2 cut(s)	810, 884
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	2 cut(s)	811, 885
BmcAI	AGTACT	1 cut(s)	576
Bme1390I	CCNGG	1 cut(s)	888
BmgBI	CACGTC	1 cut(s)	559
BmrFI	CCNGG	1 cut(s)	888
Bpu1102I	GCTNAGC	1 cut(s)	138
Bsa29I	ATCGAT	1 cut(s)	831
BsaBI	GATNNNNATC	1 cut(s)	827
BsaWI	WCCGGW	2 cut(s)	517, 533
Bse118I	RCCGGY	1 cut(s)	533
Bse21I	CCTNAGG	1 cut(s)	791
Bse3DI	GCAATG	1 cut(s)	977
Bse8I	GATNNNNATC	1 cut(s)	827
BseAI	TCCGGA	1 cut(s)	517
BseBI	CCWGG	1 cut(s)	888
BseCI	ATCGAT	1 cut(s)	831
BseGI	GGATG	1 cut(s)	421
BseJI	GATNNNNATC	1 cut(s)	827
BseMI	GCAATG	1 cut(s)	977
BseMII	CTCAG	2 cut(s)	129, 805
BseXI	GCAGC	2 cut(s)	821, 895
Bsh1236I	CGCG	1 cut(s)	925
Bsh1285I	CGRYCG	1 cut(s)	605
BshFI	GGCC	3 cut(s)	86, 207, 796
BshTI	ACCGGT	1 cut(s)	533
BshVI	ATCGAT	1 cut(s)	831
BsiEI	CGRYCG	1 cut(s)	605
BsiSI	CCGG	2 cut(s)	518, 534
BslFI	GGGAC	1 cut(s)	348
BsmAI	GTCTC	2 cut(s)	157, 375
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	3 cut(s)	86, 207, 796
Bsp13I	TCCGGA	1 cut(s)	517
Bsp1407I	TGTACA	3 cut(s)	373, 561, 772
Bsp143I	GATC	8 cut(s)	281, 602, 619, 828, 832, 841, 846, 894
Bsp1720I	GCTNAGC	1 cut(s)	138
BspACI	CCGC	6 cut(s)	192, 304, 365, 527, 695, 925
BspANI	GGCC	3 cut(s)	86, 207, 796
BspCNI	CTCAG	2 cut(s)	130, 804
BspDI	ATCGAT	1 cut(s)	831
BspEI	TCCGGA	1 cut(s)	517
BspFNI	CGCG	1 cut(s)	925
BspHI	TCATGA	1 cut(s)	349
BsrDI	GCAATG	1 cut(s)	977
BsrFI	RCCGGY	1 cut(s)	533
BsrGI	TGTACA	3 cut(s)	373, 561, 772
BssAI	RCCGGY	1 cut(s)	533
BssMI	GATC	8 cut(s)	281, 602, 619, 828, 832, 841, 846, 894
BssSI	CACGAG	1 cut(s)	486
Bst2BI	CACGAG	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	888
Bst4CI	ACNGT	1 cut(s)	566
Bst6I	CTCTTC	2 cut(s)	70, 348
BstAPI	GCANNNNNTGC	1 cut(s)	972
BstAUI	TGTACA	3 cut(s)	373, 561, 772
BstC8I	GCNNGC	2 cut(s)	394, 968
BstDEI	CTNAG	3 cut(s)	138, 685, 791
BstEII	GGTNACC	1 cut(s)	529
BstF5I	GGATG	1 cut(s)	421
BstFNI	CGCG	1 cut(s)	925
BstHHI	GCGC	1 cut(s)	925
BstKTI	GATC	8 cut(s)	284, 605, 622, 831, 835, 844, 849, 897
BstMAI	GTCTC	2 cut(s)	157, 375
BstMBI	GATC	8 cut(s)	281, 602, 619, 828, 832, 841, 846, 894
BstMCI	CGRYCG	1 cut(s)	605
BstMWI	GCNNNNNNNGC	3 cut(s)	204, 963, 972
BstNI	CCWGG	1 cut(s)	888
BstNSI	RCATGY	1 cut(s)	970
BstPI	GGTNACC	1 cut(s)	529
BstSCI	CCNGG	1 cut(s)	886
BstUI	CGCG	1 cut(s)	925
BstV1I	GCAGC	2 cut(s)	821, 895
Bsu15I	ATCGAT	1 cut(s)	831
Bsu36I	CCTNAGG	1 cut(s)	791
BsuRI	GGCC	3 cut(s)	86, 207, 796
BsuTUI	ATCGAT	1 cut(s)	831
BtrI	CACGTC	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	2 cut(s)	108, 601
Cac8I	GCNNGC	2 cut(s)	394, 968
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	1 cut(s)	925
Cfr10I	RCCGGY	1 cut(s)	533
ClaI	ATCGAT	1 cut(s)	831
Csp6I	GTAC	5 cut(s)	374, 562, 575, 773, 985
CspAI	ACCGGT	1 cut(s)	533
CviAII	CATG	7 cut(s)	133, 235, 350, 657, 670, 713, 967
CviQI	GTAC	5 cut(s)	374, 562, 575, 773, 985
DdeI	CTNAG	3 cut(s)	138, 685, 791
DpnI	GATC	8 cut(s)	283, 604, 621, 830, 834, 843, 848, 896
DpnII	GATC	8 cut(s)	281, 602, 619, 828, 832, 841, 846, 894
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	2 cut(s)	70, 348
EarI	CTCTTC	2 cut(s)	70, 348
Eco57I	CTGAAG	2 cut(s)	74, 692
Eco81I	CCTNAGG	1 cut(s)	791
Eco91I	GGTNACC	1 cut(s)	529
EcoO65I	GGTNACC	1 cut(s)	529
EcoRI	GAATTC	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	886
FaeI	CATG	7 cut(s)	136, 238, 353, 660, 673, 716, 970
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	7 cut(s)	132, 234, 349, 656, 669, 712, 966
FbaI	TGATCA	2 cut(s)	841, 894
FblI	GTMKAC	1 cut(s)	763
Fnu4HI	GCNGC	2 cut(s)	810, 884
FokI	GGATG	1 cut(s)	408
Fsp4HI	GCNGC	2 cut(s)	810, 884
FspBI	CTAG	3 cut(s)	266, 623, 999
GlaI	GCGC	1 cut(s)	924
GluI	GCNGC	2 cut(s)	810, 884
HaeIII	GGCC	3 cut(s)	86, 207, 796
HapII	CCGG	2 cut(s)	518, 534
HhaI	GCGC	1 cut(s)	925
Hin1II	CATG	7 cut(s)	136, 238, 353, 660, 673, 716, 970
Hin6I	GCGC	1 cut(s)	923
HinP1I	GCGC	1 cut(s)	923
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HinfI	GANTC	4 cut(s)	49, 107, 681, 698
HpaII	CCGG	2 cut(s)	518, 534
HphI	GGTGA	3 cut(s)	131, 190, 523
Hpy166II	GTNNAC	8 cut(s)	226, 376, 562, 599, 613, 764, 773, 985
Hpy188I	TCNGA	7 cut(s)	15, 54, 436, 556, 730, 837, 846
Hpy188III	TCNNGA	6 cut(s)	111, 167, 350, 461, 518, 623
Hpy8I	GTNNAC	8 cut(s)	226, 376, 562, 599, 613, 764, 773, 985
Hpy99I	CGWCG	1 cut(s)	213
HpyAV	CCTTC	3 cut(s)	49, 197, 727
HpyCH4III	ACNGT	1 cut(s)	566
HpyCH4IV	ACGT	3 cut(s)	468, 558, 870
HpyCH4V	TGCA	7 cut(s)	4, 198, 329, 586, 667, 786, 970
HpyF10VI	GCNNNNNNNGC	3 cut(s)	204, 963, 972
HpyF3I	CTNAG	3 cut(s)	138, 685, 791
HpySE526I	ACGT	3 cut(s)	468, 558, 870
Hsp92II	CATG	7 cut(s)	136, 238, 353, 660, 673, 716, 970
HspAI	GCGC	1 cut(s)	923
Kpn2I	TCCGGA	1 cut(s)	517
Ksp22I	TGATCA	2 cut(s)	841, 894
Kzo9I	GATC	8 cut(s)	281, 602, 619, 828, 832, 841, 846, 894
LmnI	GCTCC	1 cut(s)	520
LpnPI	CCDG	8 cut(s)	292, 474, 480, 531, 547, 778, 873, 900
Lsp1109I	GCAGC	2 cut(s)	821, 895
MaeI	CTAG	3 cut(s)	266, 623, 999
MaeII	ACGT	3 cut(s)	468, 558, 870
MaeIII	GTNAC	4 cut(s)	119, 164, 529, 566
MalI	GATC	8 cut(s)	283, 604, 621, 830, 834, 843, 848, 896
MboI	GATC	8 cut(s)	281, 602, 619, 828, 832, 841, 846, 894
MboII	GAAGA	5 cut(s)	72, 87, 365, 424, 943
MluCI	AATT	7 cut(s)	172, 216, 287, 312, 324, 429, 950
MlyI	GAGTC	3 cut(s)	43, 675, 692
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	4 cut(s)	260, 349, 800, 921
MroI	TCCGGA	1 cut(s)	517
MroXI	GAANNNNTTC	1 cut(s)	860
MseI	TTAA	5 cut(s)	65, 360, 953, 993, 1006
MslI	CAYNNNNRTG	1 cut(s)	818
MspI	CCGG	2 cut(s)	518, 534
MspR9I	CCNGG	1 cut(s)	888
MvaI	CCWGG	1 cut(s)	888
MvnI	CGCG	1 cut(s)	925
MwoI	GCNNNNNNNGC	3 cut(s)	204, 963, 972
NdeII	GATC	8 cut(s)	281, 602, 619, 828, 832, 841, 846, 894
NlaIII	CATG	7 cut(s)	136, 238, 353, 660, 673, 716, 970
NmuCI	GTSAC	3 cut(s)	119, 164, 529
NspI	RCATGY	1 cut(s)	970
PaeI	GCATGC	1 cut(s)	970
PagI	TCATGA	1 cut(s)	349
PdmI	GAANNNNTTC	1 cut(s)	860
PfeI	GAWTC	1 cut(s)	107
PinAI	ACCGGT	1 cut(s)	533
PkrI	GCNGC	2 cut(s)	811, 885
Ple19I	CGATCG	1 cut(s)	605
PleI	GAGTC	3 cut(s)	43, 675, 692
PpsI	GAGTC	3 cut(s)	43, 675, 692
Psp6I	CCWGG	1 cut(s)	886
PspEI	GGTNACC	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	886
PvuI	CGATCG	1 cut(s)	605
RsaI	GTAC	5 cut(s)	375, 563, 576, 774, 986
RsaNI	GTAC	5 cut(s)	374, 562, 575, 773, 985
RseI	CAYNNNNRTG	1 cut(s)	818
SaqAI	TTAA	5 cut(s)	65, 360, 953, 993, 1006
SatI	GCNGC	2 cut(s)	810, 884
Sau3AI	GATC	8 cut(s)	281, 602, 619, 828, 832, 841, 846, 894
ScaI	AGTACT	1 cut(s)	576
SchI	GAGTC	3 cut(s)	43, 675, 692
ScrFI	CCNGG	1 cut(s)	888
SmiMI	CAYNNNNRTG	1 cut(s)	818
SphI	GCATGC	1 cut(s)	970
Sse9I	AATT	7 cut(s)	172, 216, 287, 312, 324, 429, 950
SsiI	CCGC	6 cut(s)	192, 304, 365, 527, 695, 925
SspMI	CTAG	3 cut(s)	266, 623, 999
StyD4I	CCNGG	1 cut(s)	886
TaaI	ACNGT	1 cut(s)	566
TaiI	ACGT	3 cut(s)	471, 561, 873
TaqI	TCGA	4 cut(s)	449, 618, 701, 831
TasI	AATT	7 cut(s)	172, 216, 287, 312, 324, 429, 950
TatI	WGTACW	4 cut(s)	373, 561, 574, 772
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	5 cut(s)	65, 360, 953, 993, 1006
Tru9I	TTAA	5 cut(s)	65, 360, 953, 993, 1006
TscAI	CASTG	2 cut(s)	108, 601
TseFI	GTSAC	3 cut(s)	119, 164, 529
TseI	GCWGC	2 cut(s)	809, 883
Tsp45I	GTSAC	3 cut(s)	119, 164, 529
TspDTI	ATGAA	5 cut(s)	121, 338, 366, 410, 951
TspGWI	ACGGA	4 cut(s)	87, 332, 562, 585
TspRI	CASTG	2 cut(s)	108, 601
XapI	RAATTY	4 cut(s)	172, 216, 312, 429
XbaI	TCTAGA	1 cut(s)	622
XceI	RCATGY	1 cut(s)	970
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XmiI	GTMKAC	1 cut(s)	763
XmnI	GAANNNNTTC	1 cut(s)	860
XspI	CTAG	3 cut(s)	266, 623, 999
ZrmI	AGTACT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.