Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005919

Physical Location & Seq

Genomic Coordinates Reverse (-)

34447768 .. 34450119

Gene Structure 2352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00411830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGAAGTTCCCAATTCCCTGCATTAATTGCTTCCACTCCTCACCTGGAGAAGCCCCTCAAAGATTGAGGCAAGATGGTCAAGATCAAGAAAATTTCAGAATTTTCTCTTGCAAGGAGTTGAAATCTGCCACTAATGGCTTCCATGCCTCGAACAAGCTTGGAGAAGGTGGCTTTGGCTCTGTTTATAAGGGTAAGCTTAAGGATGGTACTCTTGTGGCTATAAAGGTGCTCTCCATCGAACTTGAATCGATGCGAGGAGAGAGGGAGTTCATAGCTGAATTGGCTGCACTTTCTGTAATCAGTCATGAAAATCTTGTTAAACTTAAAGGGTGTTGTGTTGATGGAGCTGCCAGATATTTGGTCTGTGATTACATGAAAAACAATAGCCTAAAACACACTTTATTAGGTGGAGAGCAAAACAGGATGAAATTTAGTTGGGATGCAAGGAGGAGCGTTGCATTAGGAGTAGCTCGCGGACTTGCCTATCTGCATTTCGAGGTTGAACCTCATATTCTGCACCGAGACATTAAGCCGAGTAACATACTTCTTGATGAAAACTTCATGCCAAAGGTTGGAGATTTCGGCTTATCAAAGCTGTTGAGAGAAAACCATTCTCATATCAGTACACGGGTTGCTGGGACAATGGGTTATCTTGCTCCAGAATACGCTATTAGCGGGCACTTGACTCGAAAATCAGATGTTTACAGCTTTGGAGTTCTGCTGTTGGAGATTGTCAGCGGCCGTGCAATTGTGGATTTTGATATGCAACTTGGGGAGCAATTCCTGGTTCAGAAGGCATGGGAATCATACAAGGCCGACAACCTCCTGCAATTAGTTGATCCTATACTTCAAATGAACTTCCCCAAAGATGAAGCACTCCGATTCTTAAAAGTAGGCCTTCTTTGTGTGCAAGAAATGGCAAGACTCCGGCCACGAATGACAAGGACTGTTGAGATGTTGGCGGGTGAGACTGACATGAAAAATTATCAGATTTCACAACCTGGACTTGTTTCTGATTTCACAAACATCAAAATGGGTCAGCATCAGTCAGGTGATCAGAGCACTTTCTCCAGGGTCTCCGCAGCTAGTACCACACAGACCCGCTTTTCATCTGAGGAGTTTGGGTTATCCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

378

Amino Acids

42.25

Weight (kDa)

8.09

Isoelectric Point (pI)

33.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	47 - 309	1.2e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	49 - 319	2e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15760 FvH4_7g19720 FvH4_7g19720
malus_domestica	MD01G1109700.v1.1 MD04G1098900.v1.1 MD12G1119500.v1.1
prunus_persica	Prupe.2G214600_v2.0.a1 Prupe.6G237400_v2.0.a1 Prupe.6G237400_v2.0.a1
pyrus_communis	pycom01g13680 pycom04g09390 pycom12g11850
rosa_chinensis	RchiOBHm_Chr1g0363561
rosa_laevigata	RLG00000027557
rosa_multiflora	Rmu_sc0000548.1_g000001 Rmu_sc0004871.1_g000014 Rmu_ssc0000433.1_g000008
rosa_roxburghii	Rroxscaffold_4G00293080 Rroxscaffold_6G00411830
rosa_rugosa	Rorug01G0308100 Rorug03G0102000 Rorug03G0102100
rosa_samantha	Rh1BG280300 Rh1CG296400 Rh1DG311500 Rh3DG200700
rosa_wichuraiana	Rw1G028100 Rw3G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	186
AccB7I	CCANNNNNTGG	1 cut(s)	572
AccII	CGCG	1 cut(s)	474
AciI	CCGC	6 cut(s)	474, 675, 738, 962, 1080, 1102
AclWI	GGATC	1 cut(s)	833
AcoI	YGGCCR	2 cut(s)	739, 929
AcsI	RAATTY	3 cut(s)	91, 99, 428
AfaI	GTAC	3 cut(s)	208, 625, 1090
AfiI	CCNNNNNNNGG	1 cut(s)	572
AflII	CTTAAG	1 cut(s)	197
AgsI	TTSAA	4 cut(s)	121, 245, 503, 851
AjnI	CCWGG	4 cut(s)	43, 783, 1000, 1070
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	8 cut(s)	157, 196, 275, 347, 470, 595, 708, 1085
AluI	AGCT	8 cut(s)	157, 196, 275, 347, 470, 595, 708, 1085
Alw21I	GWGCWC	2 cut(s)	231, 1064
Alw26I	GTCTC	3 cut(s)	516, 962, 1081
AlwI	GGATC	1 cut(s)	833
AoxI	GGCC	4 cut(s)	739, 813, 895, 929
ApeKI	GCWGC	3 cut(s)	284, 347, 1082
ApoI	RAATTY	3 cut(s)	91, 99, 428
AseI	ATTAAT	1 cut(s)	24
AsuHPI	GGTGA	3 cut(s)	33, 977, 1064
BaeGI	GKGCMC	1 cut(s)	681
BaeI	ACNNNNGTAYC	2 cut(s)	198, 231
Bbv12I	GWGCWC	2 cut(s)	231, 1064
BbvI	GCAGC	3 cut(s)	271, 334, 1094
BccI	CCATC	4 cut(s)	68, 197, 242, 335
BceAI	ACGGC	1 cut(s)	726
BcgI	CGANNNNNNTGC	2 cut(s)	668, 702
BciT130I	CCWGG	4 cut(s)	45, 785, 1002, 1072
BclI	TGATCA	1 cut(s)	1054
BcoDI	GTCTC	3 cut(s)	516, 962, 1081
BfaI	CTAG	1 cut(s)	1086
BfrI	CTTAAG	1 cut(s)	197
BisI	GCNGC	4 cut(s)	285, 348, 739, 1083
BlsI	GCNGC	4 cut(s)	286, 349, 740, 1084
Bme1390I	CCNGG	4 cut(s)	45, 785, 1002, 1072
BmrFI	CCNGG	4 cut(s)	45, 785, 1002, 1072
BmsI	GCATC	3 cut(s)	240, 430, 1051
BpmI	CTGGAG	3 cut(s)	66, 642, 1054
Bsa29I	ATCGAT	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	1081
BsaJI	CCNNGG	1 cut(s)	1071
BsaXI	ACNNNNNCTCC	1 cut(s)	1109
Bsc4I	CCNNNNNNNGG	1 cut(s)	572
BseBI	CCWGG	4 cut(s)	45, 785, 1002, 1072
BseCI	ATCGAT	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	1071
BseGI	GGATG	3 cut(s)	208, 429, 445
BseLI	CCNNNNNNNGG	1 cut(s)	572
BseMII	CTCAG	1 cut(s)	1104
BseRI	GAGGAG	4 cut(s)	28, 270, 463, 1130
BseSI	GKGCMC	1 cut(s)	681
BseX3I	CGGCCG	1 cut(s)	739
BseXI	GCAGC	3 cut(s)	271, 334, 1094
BseYI	CCCAGC	1 cut(s)	635
BsgI	GTGCAG	2 cut(s)	270, 500
Bsh1236I	CGCG	1 cut(s)	474
Bsh1285I	CGRYCG	1 cut(s)	742
BshFI	GGCC	4 cut(s)	741, 815, 897, 931
BshVI	ATCGAT	1 cut(s)	248
BsiEI	CGRYCG	1 cut(s)	742
BsiHKAI	GWGCWC	2 cut(s)	231, 1064
BsiSI	CCGG	1 cut(s)	928
BslFI	GGGAC	1 cut(s)	652
BslI	CCNNNNNNNGG	1 cut(s)	572
BsmAI	GTCTC	3 cut(s)	516, 962, 1081
BsmFI	GGGAC	1 cut(s)	652
BsnI	GGCC	4 cut(s)	741, 815, 897, 931
Bso31I	GGTCTC	1 cut(s)	1081
Bsp1286I	GDGCHC	3 cut(s)	231, 681, 1064
Bsp143I	GATC	3 cut(s)	82, 838, 1054
BspACI	CCGC	6 cut(s)	474, 675, 738, 962, 1080, 1102
BspANI	GGCC	4 cut(s)	741, 815, 897, 931
BspCNI	CTCAG	1 cut(s)	1105
BspDI	ATCGAT	1 cut(s)	248
BspFNI	CGCG	1 cut(s)	474
BspHI	TCATGA	1 cut(s)	304
BspPI	GGATC	1 cut(s)	833
BspTI	CTTAAG	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	1081
BssECI	CCNNGG	1 cut(s)	1071
BssMI	GATC	3 cut(s)	82, 838, 1054
Bst2UI	CCWGG	4 cut(s)	45, 785, 1002, 1072
Bst4CI	ACNGT	1 cut(s)	949
BstAFI	CTTAAG	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	472, 677
BstDEI	CTNAG	1 cut(s)	1113
BstF5I	GGATG	3 cut(s)	208, 429, 445
BstFNI	CGCG	1 cut(s)	474
BstKTI	GATC	3 cut(s)	85, 841, 1057
BstMAI	GTCTC	3 cut(s)	516, 962, 1081
BstMBI	GATC	3 cut(s)	82, 838, 1054
BstMCI	CGRYCG	1 cut(s)	742
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 281
BstNI	CCWGG	4 cut(s)	45, 785, 1002, 1072
BstSCI	CCNGG	4 cut(s)	43, 783, 1000, 1070
BstSLI	GKGCMC	1 cut(s)	681
BstUI	CGCG	1 cut(s)	474
BstV1I	GCAGC	3 cut(s)	271, 334, 1094
BstXI	CCANNNNNNTGG	1 cut(s)	358
BstZI	CGGCCG	1 cut(s)	739
Bsu15I	ATCGAT	1 cut(s)	248
BsuRI	GGCC	4 cut(s)	741, 815, 897, 931
BsuTUI	ATCGAT	1 cut(s)	248
BtsCI	GGATG	3 cut(s)	208, 429, 445
Cac8I	GCNNGC	2 cut(s)	472, 677
CciI	TCATGA	1 cut(s)	304
ClaI	ATCGAT	1 cut(s)	248
Csp6I	GTAC	3 cut(s)	207, 624, 1089
CviAII	CATG	6 cut(s)	143, 305, 373, 562, 798, 976
CviQI	GTAC	3 cut(s)	207, 624, 1089
DdeI	CTNAG	1 cut(s)	1113
DpnI	GATC	3 cut(s)	84, 840, 1056
DpnII	GATC	3 cut(s)	82, 838, 1054
EaeI	YGGCCR	2 cut(s)	739, 929
EagI	CGGCCG	1 cut(s)	739
EclXI	CGGCCG	1 cut(s)	739
Eco147I	AGGCCT	1 cut(s)	897
Eco31I	GGTCTC	1 cut(s)	1081
Eco52I	CGGCCG	1 cut(s)	739
EcoRII	CCWGG	4 cut(s)	43, 783, 1000, 1070
FaeI	CATG	6 cut(s)	146, 308, 376, 565, 801, 979
FalI	AAGNNNNNCTT	2 cut(s)	882, 914
FaqI	GGGAC	1 cut(s)	652
FatI	CATG	6 cut(s)	142, 304, 372, 561, 797, 975
FauI	CCCGC	3 cut(s)	668, 955, 1109
FbaI	TGATCA	1 cut(s)	1054
Fnu4HI	GCNGC	4 cut(s)	285, 348, 739, 1083
FokI	GGATG	3 cut(s)	215, 436, 452
Fsp4HI	GCNGC	4 cut(s)	285, 348, 739, 1083
FspBI	CTAG	1 cut(s)	1086
GluI	GCNGC	4 cut(s)	285, 348, 739, 1083
GsaI	CCCAGC	1 cut(s)	639
GsuI	CTGGAG	3 cut(s)	66, 642, 1054
HaeIII	GGCC	4 cut(s)	741, 815, 897, 931
HapII	CCGG	1 cut(s)	928
Hin1II	CATG	6 cut(s)	146, 308, 376, 565, 801, 979
HindIII	AAGCTT	2 cut(s)	155, 194
HinfI	GANTC	5 cut(s)	245, 685, 803, 882, 924
HpaII	CCGG	1 cut(s)	928
HphI	GGTGA	3 cut(s)	33, 977, 1064
Hpy166II	GTNNAC	2 cut(s)	626, 703
Hpy188I	TCNGA	8 cut(s)	98, 697, 792, 881, 990, 1015, 1059, 1114
Hpy188III	TCNNGA	5 cut(s)	80, 86, 305, 548, 659
Hpy8I	GTNNAC	2 cut(s)	626, 703
HpyAV	CCTTC	3 cut(s)	158, 787, 908
HpyCH4III	ACNGT	1 cut(s)	949
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 281
HpyF3I	CTNAG	1 cut(s)	1113
Hsp92II	CATG	6 cut(s)	146, 308, 376, 565, 801, 979
Ksp22I	TGATCA	1 cut(s)	1054
Kzo9I	GATC	3 cut(s)	82, 838, 1054
LmnI	GCTCC	4 cut(s)	344, 450, 661, 775
Lsp1109I	GCAGC	3 cut(s)	271, 334, 1094
LweI	GCATC	3 cut(s)	240, 430, 1051
MaeI	CTAG	1 cut(s)	1086
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	3 cut(s)	84, 840, 1056
MboI	GATC	3 cut(s)	82, 838, 1054
MfeI	CAATTG	1 cut(s)	747
MhlI	GDGCHC	3 cut(s)	231, 681, 1064
MlyI	GAGTC	2 cut(s)	679, 918
MmeI	TCCRAC	2 cut(s)	553, 705
MseI	TTAA	6 cut(s)	24, 198, 318, 324, 528, 887
MslI	CAYNNNNRTG	1 cut(s)	1031
MspA1I	CMGCKG	1 cut(s)	738
MspCI	CTTAAG	1 cut(s)	197
MspI	CCGG	1 cut(s)	928
MspR9I	CCNGG	4 cut(s)	45, 785, 1002, 1072
MunI	CAATTG	1 cut(s)	747
MvaI	CCWGG	4 cut(s)	45, 785, 1002, 1072
MvnI	CGCG	1 cut(s)	474
MwoI	GCNNNNNNNGC	2 cut(s)	27, 281
NdeII	GATC	3 cut(s)	82, 838, 1054
NlaIII	CATG	6 cut(s)	146, 308, 376, 565, 801, 979
NmeAIII	GCCGAG	1 cut(s)	558
PagI	TCATGA	1 cut(s)	304
PceI	AGGCCT	1 cut(s)	897
PfeI	GAWTC	3 cut(s)	245, 803, 882
PflMI	CCANNNNNTGG	1 cut(s)	572
PkrI	GCNGC	4 cut(s)	286, 349, 740, 1084
PleI	GAGTC	2 cut(s)	679, 918
PpsI	GAGTC	2 cut(s)	679, 918
PshBI	ATTAAT	1 cut(s)	24
PsiI	TTATAA	1 cut(s)	186
Psp6I	CCWGG	4 cut(s)	43, 783, 1000, 1070
PspFI	CCCAGC	1 cut(s)	635
PspGI	CCWGG	4 cut(s)	43, 783, 1000, 1070
RsaI	GTAC	3 cut(s)	208, 625, 1090
RsaNI	GTAC	3 cut(s)	207, 624, 1089
RseI	CAYNNNNRTG	1 cut(s)	1031
SaqAI	TTAA	6 cut(s)	24, 198, 318, 324, 528, 887
SatI	GCNGC	4 cut(s)	285, 348, 739, 1083
Sau3AI	GATC	3 cut(s)	82, 838, 1054
SchI	GAGTC	2 cut(s)	679, 918
ScrFI	CCNGG	4 cut(s)	45, 785, 1002, 1072
SduI	GDGCHC	3 cut(s)	231, 681, 1064
SfaNI	GCATC	3 cut(s)	240, 430, 1051
SmiMI	CAYNNNNRTG	1 cut(s)	1031
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SseBI	AGGCCT	1 cut(s)	897
SsiI	CCGC	6 cut(s)	474, 675, 738, 962, 1080, 1102
SspMI	CTAG	1 cut(s)	1086
StuI	AGGCCT	1 cut(s)	897
StyD4I	CCNGG	4 cut(s)	43, 783, 1000, 1070
TaaI	ACNGT	1 cut(s)	949
TaqI	TCGA	5 cut(s)	149, 237, 248, 495, 688
TatI	WGTACW	1 cut(s)	623
TauI	GCSGC	1 cut(s)	741
TfiI	GAWTC	3 cut(s)	245, 803, 882
Tru1I	TTAA	6 cut(s)	24, 198, 318, 324, 528, 887
Tru9I	TTAA	6 cut(s)	24, 198, 318, 324, 528, 887
TseI	GCWGC	3 cut(s)	284, 347, 1082
Van91I	CCANNNNNTGG	1 cut(s)	572
Vha464I	CTTAAG	1 cut(s)	197
VspI	ATTAAT	1 cut(s)	24
XapI	RAATTY	3 cut(s)	91, 99, 428
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XspI	CTAG	1 cut(s)	1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.