Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000548.1

Orthogroup ID

OG0005919

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 806

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000548.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

gcatgggaattgcacatggacaacagactcttagatatagcggactcgacacttcagcatgatggcaacttttcagagaaggaagctctccattttctaaaggtgggtctacattgtgtacaagagaaatgcaacctcaggccaaaaatgtcagcagccattgaaatgatgatgatcgatcagaatgatcagatcaaagtgaatgatttcaacaacgtggaaataaggcagccaggagtgatcatcaataatatggacttgaaaatagcgcagaggaagaatgaaagaagctcaaaattaagcattagtagcatgcaatgcccacaagtgtacccttttaatactagagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

117

Amino Acids

13.53

Weight (kDa)

6.47

Isoelectric Point (pI)

34.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15760 FvH4_7g19720 FvH4_7g19720
malus_domestica	MD01G1109700.v1.1 MD04G1098900.v1.1 MD12G1119500.v1.1
prunus_persica	Prupe.2G214600_v2.0.a1 Prupe.6G237400_v2.0.a1 Prupe.6G237400_v2.0.a1
pyrus_communis	pycom01g13680 pycom04g09390 pycom12g11850
rosa_chinensis	RchiOBHm_Chr1g0363561
rosa_laevigata	RLG00000027557
rosa_multiflora	Rmu_sc0000548.1_g000001 Rmu_sc0004871.1_g000014 Rmu_ssc0000433.1_g000008
rosa_roxburghii	Rroxscaffold_4G00293080 Rroxscaffold_6G00411830
rosa_rugosa	Rorug01G0308100 Rorug03G0102000 Rorug03G0102100
rosa_samantha	Rh1BG280300 Rh1CG296400 Rh1DG311500 Rh3DG200700
rosa_wichuraiana	Rw1G028100 Rw3G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	109
AciI	CCGC	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	2 cut(s)	120, 332
AgsI	TTSAA	3 cut(s)	164, 211, 262
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	2 cut(s)	86, 291
AluI	AGCT	2 cut(s)	86, 291
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	2 cut(s)	155, 229
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	271
AxyI	CCTNAGG	1 cut(s)	137
BaeI	ACNNNNGTAYC	2 cut(s)	314, 347
BbvI	GCAGC	2 cut(s)	167, 241
BccI	CCATC	1 cut(s)	56
BciT130I	CCWGG	1 cut(s)	234
BclI	TGATCA	2 cut(s)	187, 240
BfaI	CTAG	1 cut(s)	345
BisI	GCNGC	2 cut(s)	156, 230
BlsI	GCNGC	2 cut(s)	157, 231
Bme1390I	CCNGG	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	234
Bsa29I	ATCGAT	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	173
Bse21I	CCTNAGG	1 cut(s)	137
Bse3DI	GCAATG	1 cut(s)	323
Bse8I	GATNNNNATC	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	234
BseCI	ATCGAT	1 cut(s)	177
BseJI	GATNNNNATC	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	323
BseMII	CTCAG	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	167, 241
BshFI	GGCC	1 cut(s)	142
BshVI	ATCGAT	1 cut(s)	177
BsnI	GGCC	1 cut(s)	142
Bsp1407I	TGTACA	1 cut(s)	118
Bsp143I	GATC	5 cut(s)	174, 178, 187, 192, 240
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	150
BspDI	ATCGAT	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	323
BsrGI	TGTACA	1 cut(s)	118
BssMI	GATC	5 cut(s)	174, 178, 187, 192, 240
Bst2UI	CCWGG	1 cut(s)	234
BstAPI	GCANNNNNTGC	1 cut(s)	318
BstAUI	TGTACA	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	314
BstDEI	CTNAG	2 cut(s)	31, 137
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	5 cut(s)	177, 181, 190, 195, 243
BstMBI	GATC	5 cut(s)	174, 178, 187, 192, 240
BstMWI	GCNNNNNNNGC	2 cut(s)	309, 318
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	232
BstV1I	GCAGC	2 cut(s)	167, 241
Bsu15I	ATCGAT	1 cut(s)	177
Bsu36I	CCTNAGG	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	142
BsuTUI	ATCGAT	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	314
CfoI	GCGC	1 cut(s)	271
ClaI	ATCGAT	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	119, 331
CviAII	CATG	4 cut(s)	3, 16, 59, 313
CviJI	RGCY	5 cut(s)	86, 142, 158, 232, 291
CviKI_1	RGCY	5 cut(s)	86, 142, 158, 232, 291
CviQI	GTAC	2 cut(s)	119, 331
DdeI	CTNAG	2 cut(s)	31, 137
DpnI	GATC	5 cut(s)	176, 180, 189, 194, 242
DpnII	GATC	5 cut(s)	174, 178, 187, 192, 240
Eco57I	CTGAAG	1 cut(s)	38
Eco81I	CCTNAGG	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	232
FaeI	CATG	4 cut(s)	6, 19, 62, 316
FaiI	YATR	6 cut(s)	4, 17, 38, 60, 254, 314
FatI	CATG	4 cut(s)	2, 15, 58, 312
FbaI	TGATCA	2 cut(s)	187, 240
FblI	GTMKAC	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	156, 230
Fsp4HI	GCNGC	2 cut(s)	156, 230
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	2 cut(s)	156, 230
HaeIII	GGCC	1 cut(s)	142
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	4 cut(s)	6, 19, 62, 316
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	2 cut(s)	27, 44
Hpy166II	GTNNAC	3 cut(s)	110, 119, 331
Hpy188I	TCNGA	3 cut(s)	76, 183, 192
Hpy8I	GTNNAC	3 cut(s)	110, 119, 331
HpyAV	CCTTC	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	3 cut(s)	13, 132, 316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	309, 318
HpyF3I	CTNAG	2 cut(s)	31, 137
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	4 cut(s)	6, 19, 62, 316
HspAI	GCGC	1 cut(s)	269
Ksp22I	TGATCA	2 cut(s)	187, 240
Kzo9I	GATC	5 cut(s)	174, 178, 187, 192, 240
LpnPI	CCDG	3 cut(s)	124, 219, 246
Lsp1109I	GCAGC	2 cut(s)	167, 241
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	1 cut(s)	216
MalI	GATC	5 cut(s)	176, 180, 189, 194, 242
MboI	GATC	5 cut(s)	174, 178, 187, 192, 240
MboII	GAAGA	1 cut(s)	289
MluCI	AATT	2 cut(s)	8, 296
MlyI	GAGTC	2 cut(s)	21, 38
MnlI	CCTC	2 cut(s)	146, 267
MroXI	GAANNNNTTC	1 cut(s)	206
MseI	TTAA	3 cut(s)	299, 339, 352
MslI	CAYNNNNRTG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	2 cut(s)	309, 318
NdeII	GATC	5 cut(s)	174, 178, 187, 192, 240
NlaIII	CATG	4 cut(s)	6, 19, 62, 316
NspI	RCATGY	1 cut(s)	316
PaeI	GCATGC	1 cut(s)	316
PdmI	GAANNNNTTC	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	157, 231
PleI	GAGTC	2 cut(s)	21, 38
PpsI	GAGTC	2 cut(s)	21, 38
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
RsaI	GTAC	2 cut(s)	120, 332
RsaNI	GTAC	2 cut(s)	119, 331
RseI	CAYNNNNRTG	1 cut(s)	164
SaqAI	TTAA	3 cut(s)	299, 339, 352
SatI	GCNGC	2 cut(s)	156, 230
Sau3AI	GATC	5 cut(s)	174, 178, 187, 192, 240
SchI	GAGTC	2 cut(s)	21, 38
ScrFI	CCNGG	1 cut(s)	234
SetI	ASST	5 cut(s)	88, 105, 138, 219, 293
SmiMI	CAYNNNNRTG	1 cut(s)	164
SphI	GCATGC	1 cut(s)	316
Sse9I	AATT	2 cut(s)	8, 296
SsiI	CCGC	1 cut(s)	41
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	232
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	47, 177
TasI	AATT	2 cut(s)	8, 296
TatI	WGTACW	1 cut(s)	118
Tru1I	TTAA	3 cut(s)	299, 339, 352
Tru9I	TTAA	3 cut(s)	299, 339, 352
TseI	GCWGC	2 cut(s)	155, 229
TspDTI	ATGAA	1 cut(s)	297
XceI	RCATGY	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.