Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004871.1

Orthogroup ID

OG0005919

Physical Location & Seq

Genomic Coordinates Reverse (-)

41866 .. 43524

Gene Structure 1659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004871.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

atgaagttcccaattccctgcataaattgcttccactcctcacctggagaagcccctcaaagattgaggcaagatggtcaaggtcaagatcaagaaaatttcagaattttctcttgcaaggagttgaaatctgccactaatggcttccatgcctcaaacaagcttggagaaggtggctttggctctgtttataagggtaagcttaaggatggtactctcgtcgctataaaggtgctctccatcgaacttgaatcgatgcgaggagagagggagttcatagctgaattggctgcactctctgtaatcagtcatgaaaatcttgttaaacttaaagggtgttgtgttgatggagctgccagatatttggtctatgattacatgaaaaacaatagccttacacacactttattaggtggagagcaaaacaggatgaaatttagttgggatgcaaggaggagcgttgcattaggagtagctcgcggacttgcctatctgcatttcgaggttgaacctcatattctgcaccgagacattaagccgagtaacatacttcttgatgaaaacttcatgccaaaggttggagatttcggcttatcaaagctgttgagagaaaaccattctcatatcagtacacgggttgctgggacaatgggttatcttgctccagaatacgctattagcgggcacttgactcgaaaatcagatgtttacagctttggagttctgctgttggggattgtcagcggccgtgcaattgtggattttgatatgcaacttggggagcaattcctggttcaaaaggcatgggaatcatacaaggcagacaacctcctgcaattagttgatcctatacttaaaatgaacttccccaaagatgaagcactccgattcttaaaagtaggccttctttgtgtgcaagaaatggcaagactccggccacgaatgacaaggactgttgagatgttggcgggtgagattgacatgaaaaattatcagatttcacaacctggacttgtttctgatttcacaaacatcaaaatgggtcagcatcagtcaggtgatcatagcactttctccagggtctccgcagctagtaccacacaaacccgcttttcatctgaggagttcgggttatcctcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

380

Amino Acids

42.42

Weight (kDa)

8.42

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15760 FvH4_7g19720 FvH4_7g19720
malus_domestica	MD01G1109700.v1.1 MD04G1098900.v1.1 MD12G1119500.v1.1
prunus_persica	Prupe.2G214600_v2.0.a1 Prupe.6G237400_v2.0.a1 Prupe.6G237400_v2.0.a1
pyrus_communis	pycom01g13680 pycom04g09390 pycom12g11850
rosa_chinensis	RchiOBHm_Chr1g0363561
rosa_laevigata	RLG00000027557
rosa_multiflora	Rmu_sc0000548.1_g000001 Rmu_sc0004871.1_g000014 Rmu_ssc0000433.1_g000008
rosa_roxburghii	Rroxscaffold_4G00293080 Rroxscaffold_6G00411830
rosa_rugosa	Rorug01G0308100 Rorug03G0102000 Rorug03G0102100
rosa_samantha	Rh1BG280300 Rh1CG296400 Rh1DG311500 Rh3DG200700
rosa_wichuraiana	Rw1G028100 Rw3G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	192
AccB7I	CCANNNNNTGG	1 cut(s)	578
AccII	CGCG	1 cut(s)	480
AciI	CCGC	6 cut(s)	480, 681, 744, 968, 1086, 1108
AclWI	GGATC	1 cut(s)	839
AcoI	YGGCCR	2 cut(s)	745, 935
AcsI	RAATTY	3 cut(s)	97, 105, 434
AfaI	GTAC	3 cut(s)	214, 631, 1096
AfiI	CCNNNNNNNGG	1 cut(s)	578
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	4 cut(s)	127, 251, 509, 797
AjnI	CCWGG	4 cut(s)	43, 789, 1006, 1076
AjuI	GAANNNNNNNTTGG	2 cut(s)	162, 194
AluBI	AGCT	8 cut(s)	163, 202, 281, 353, 476, 601, 714, 1091
AluI	AGCT	8 cut(s)	163, 202, 281, 353, 476, 601, 714, 1091
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	2 cut(s)	522, 1087
AlwI	GGATC	1 cut(s)	839
AoxI	GGCC	3 cut(s)	745, 901, 935
ApeKI	GCWGC	3 cut(s)	290, 353, 1088
ApoI	RAATTY	3 cut(s)	97, 105, 434
AsuHPI	GGTGA	3 cut(s)	33, 983, 1070
BaeGI	GKGCMC	1 cut(s)	687
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	3 cut(s)	277, 340, 1100
BccI	CCATC	4 cut(s)	68, 203, 248, 341
BceAI	ACGGC	1 cut(s)	732
BcgI	CGANNNNNNTGC	2 cut(s)	674, 708
BciT130I	CCWGG	4 cut(s)	45, 791, 1008, 1078
BclI	TGATCA	1 cut(s)	1060
BcoDI	GTCTC	2 cut(s)	522, 1087
BfaI	CTAG	1 cut(s)	1092
BfrI	CTTAAG	1 cut(s)	203
BisI	GCNGC	4 cut(s)	291, 354, 745, 1089
BlsI	GCNGC	4 cut(s)	292, 355, 746, 1090
Bme1390I	CCNGG	4 cut(s)	45, 791, 1008, 1078
BmrFI	CCNGG	4 cut(s)	45, 791, 1008, 1078
BmsI	GCATC	3 cut(s)	246, 436, 1057
BpmI	CTGGAG	3 cut(s)	66, 648, 1060
Bsa29I	ATCGAT	1 cut(s)	254
BsaI	GGTCTC	1 cut(s)	1087
BsaJI	CCNNGG	1 cut(s)	1077
BsaXI	ACNNNNNCTCC	1 cut(s)	1115
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
BseBI	CCWGG	4 cut(s)	45, 791, 1008, 1078
BseCI	ATCGAT	1 cut(s)	254
BseDI	CCNNGG	1 cut(s)	1077
BseGI	GGATG	3 cut(s)	214, 435, 451
BseLI	CCNNNNNNNGG	1 cut(s)	578
BseMII	CTCAG	1 cut(s)	1110
BseRI	GAGGAG	4 cut(s)	28, 276, 469, 1136
BseSI	GKGCMC	1 cut(s)	687
BseX3I	CGGCCG	1 cut(s)	745
BseXI	GCAGC	3 cut(s)	277, 340, 1100
BseYI	CCCAGC	1 cut(s)	641
BsgI	GTGCAG	2 cut(s)	276, 506
Bsh1236I	CGCG	1 cut(s)	480
Bsh1285I	CGRYCG	1 cut(s)	748
BshFI	GGCC	3 cut(s)	747, 903, 937
BshVI	ATCGAT	1 cut(s)	254
BsiEI	CGRYCG	1 cut(s)	748
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	934
BslFI	GGGAC	1 cut(s)	658
BslI	CCNNNNNNNGG	1 cut(s)	578
BsmAI	GTCTC	2 cut(s)	522, 1087
BsmFI	GGGAC	1 cut(s)	658
BsnI	GGCC	3 cut(s)	747, 903, 937
Bso31I	GGTCTC	1 cut(s)	1087
Bsp1286I	GDGCHC	2 cut(s)	237, 687
Bsp143I	GATC	3 cut(s)	88, 844, 1060
BspACI	CCGC	6 cut(s)	480, 681, 744, 968, 1086, 1108
BspANI	GGCC	3 cut(s)	747, 903, 937
BspCNI	CTCAG	1 cut(s)	1111
BspDI	ATCGAT	1 cut(s)	254
BspFNI	CGCG	1 cut(s)	480
BspHI	TCATGA	1 cut(s)	310
BspPI	GGATC	1 cut(s)	839
BspTI	CTTAAG	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	1087
BssECI	CCNNGG	1 cut(s)	1077
BssMI	GATC	3 cut(s)	88, 844, 1060
Bst2UI	CCWGG	4 cut(s)	45, 791, 1008, 1078
Bst4CI	ACNGT	1 cut(s)	955
BstAFI	CTTAAG	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	478, 683
BstDEI	CTNAG	1 cut(s)	1119
BstF5I	GGATG	3 cut(s)	214, 435, 451
BstFNI	CGCG	1 cut(s)	480
BstKTI	GATC	3 cut(s)	91, 847, 1063
BstMAI	GTCTC	2 cut(s)	522, 1087
BstMBI	GATC	3 cut(s)	88, 844, 1060
BstMCI	CGRYCG	1 cut(s)	748
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 287
BstNI	CCWGG	4 cut(s)	45, 791, 1008, 1078
BstSCI	CCNGG	4 cut(s)	43, 789, 1006, 1076
BstSLI	GKGCMC	1 cut(s)	687
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	3 cut(s)	277, 340, 1100
BstXI	CCANNNNNNTGG	1 cut(s)	364
BstZI	CGGCCG	1 cut(s)	745
Bsu15I	ATCGAT	1 cut(s)	254
BsuRI	GGCC	3 cut(s)	747, 903, 937
BsuTUI	ATCGAT	1 cut(s)	254
BtsCI	GGATG	3 cut(s)	214, 435, 451
Cac8I	GCNNGC	2 cut(s)	478, 683
CciI	TCATGA	1 cut(s)	310
ClaI	ATCGAT	1 cut(s)	254
Csp6I	GTAC	3 cut(s)	213, 630, 1095
CviAII	CATG	6 cut(s)	149, 311, 379, 568, 804, 982
CviQI	GTAC	3 cut(s)	213, 630, 1095
DdeI	CTNAG	1 cut(s)	1119
DpnI	GATC	3 cut(s)	90, 846, 1062
DpnII	GATC	3 cut(s)	88, 844, 1060
EaeI	YGGCCR	2 cut(s)	745, 935
EagI	CGGCCG	1 cut(s)	745
EclXI	CGGCCG	1 cut(s)	745
Eco147I	AGGCCT	1 cut(s)	903
Eco31I	GGTCTC	1 cut(s)	1087
Eco52I	CGGCCG	1 cut(s)	745
EcoRII	CCWGG	4 cut(s)	43, 789, 1006, 1076
FaeI	CATG	6 cut(s)	152, 314, 382, 571, 807, 985
FalI	AAGNNNNNCTT	2 cut(s)	888, 920
FaqI	GGGAC	1 cut(s)	658
FatI	CATG	6 cut(s)	148, 310, 378, 567, 803, 981
FauI	CCCGC	3 cut(s)	674, 961, 1115
FbaI	TGATCA	1 cut(s)	1060
Fnu4HI	GCNGC	4 cut(s)	291, 354, 745, 1089
FokI	GGATG	3 cut(s)	221, 442, 458
Fsp4HI	GCNGC	4 cut(s)	291, 354, 745, 1089
FspBI	CTAG	1 cut(s)	1092
GluI	GCNGC	4 cut(s)	291, 354, 745, 1089
GsaI	CCCAGC	1 cut(s)	645
GsuI	CTGGAG	3 cut(s)	66, 648, 1060
HaeIII	GGCC	3 cut(s)	747, 903, 937
HapII	CCGG	1 cut(s)	934
Hin1II	CATG	6 cut(s)	152, 314, 382, 571, 807, 985
HindIII	AAGCTT	2 cut(s)	161, 200
HinfI	GANTC	5 cut(s)	251, 691, 809, 888, 930
HpaII	CCGG	1 cut(s)	934
HphI	GGTGA	3 cut(s)	33, 983, 1070
Hpy166II	GTNNAC	2 cut(s)	632, 709
Hpy188I	TCNGA	6 cut(s)	104, 703, 887, 996, 1021, 1120
Hpy188III	TCNNGA	5 cut(s)	86, 92, 311, 554, 665
Hpy8I	GTNNAC	2 cut(s)	632, 709
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	2 cut(s)	164, 914
HpyCH4III	ACNGT	1 cut(s)	955
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 287
HpyF3I	CTNAG	1 cut(s)	1119
Hsp92II	CATG	6 cut(s)	152, 314, 382, 571, 807, 985
Ksp22I	TGATCA	1 cut(s)	1060
Kzo9I	GATC	3 cut(s)	88, 844, 1060
LmnI	GCTCC	4 cut(s)	350, 456, 667, 781
Lsp1109I	GCAGC	3 cut(s)	277, 340, 1100
LweI	GCATC	3 cut(s)	246, 436, 1057
MaeI	CTAG	1 cut(s)	1092
MaeIII	GTNAC	1 cut(s)	542
MalI	GATC	3 cut(s)	90, 846, 1062
MboI	GATC	3 cut(s)	88, 844, 1060
MfeI	CAATTG	1 cut(s)	753
MhlI	GDGCHC	2 cut(s)	237, 687
MlyI	GAGTC	2 cut(s)	685, 924
MmeI	TCCRAC	1 cut(s)	559
MseI	TTAA	6 cut(s)	204, 324, 330, 534, 855, 893
MslI	CAYNNNNRTG	1 cut(s)	1037
MspA1I	CMGCKG	1 cut(s)	744
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	1 cut(s)	934
MspR9I	CCNGG	4 cut(s)	45, 791, 1008, 1078
MunI	CAATTG	1 cut(s)	753
MvaI	CCWGG	4 cut(s)	45, 791, 1008, 1078
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	2 cut(s)	27, 287
NdeII	GATC	3 cut(s)	88, 844, 1060
NlaIII	CATG	6 cut(s)	152, 314, 382, 571, 807, 985
NmeAIII	GCCGAG	1 cut(s)	564
PagI	TCATGA	1 cut(s)	310
PceI	AGGCCT	1 cut(s)	903
PfeI	GAWTC	3 cut(s)	251, 809, 888
PflMI	CCANNNNNTGG	1 cut(s)	578
PkrI	GCNGC	4 cut(s)	292, 355, 746, 1090
PleI	GAGTC	2 cut(s)	685, 924
PpsI	GAGTC	2 cut(s)	685, 924
PsiI	TTATAA	1 cut(s)	192
Psp6I	CCWGG	4 cut(s)	43, 789, 1006, 1076
PspFI	CCCAGC	1 cut(s)	641
PspGI	CCWGG	4 cut(s)	43, 789, 1006, 1076
RsaI	GTAC	3 cut(s)	214, 631, 1096
RsaNI	GTAC	3 cut(s)	213, 630, 1095
RseI	CAYNNNNRTG	1 cut(s)	1037
SaqAI	TTAA	6 cut(s)	204, 324, 330, 534, 855, 893
SatI	GCNGC	4 cut(s)	291, 354, 745, 1089
Sau3AI	GATC	3 cut(s)	88, 844, 1060
SchI	GAGTC	2 cut(s)	685, 924
ScrFI	CCNGG	4 cut(s)	45, 791, 1008, 1078
SduI	GDGCHC	2 cut(s)	237, 687
SfaNI	GCATC	3 cut(s)	246, 436, 1057
SmiMI	CAYNNNNRTG	1 cut(s)	1037
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SseBI	AGGCCT	1 cut(s)	903
SsiI	CCGC	6 cut(s)	480, 681, 744, 968, 1086, 1108
SspMI	CTAG	1 cut(s)	1092
StuI	AGGCCT	1 cut(s)	903
StyD4I	CCNGG	4 cut(s)	43, 789, 1006, 1076
TaaI	ACNGT	1 cut(s)	955
TaqI	TCGA	4 cut(s)	243, 254, 501, 694
TatI	WGTACW	1 cut(s)	629
TauI	GCSGC	1 cut(s)	747
TfiI	GAWTC	3 cut(s)	251, 809, 888
Tru1I	TTAA	6 cut(s)	204, 324, 330, 534, 855, 893
Tru9I	TTAA	6 cut(s)	204, 324, 330, 534, 855, 893
TseI	GCWGC	3 cut(s)	290, 353, 1088
Van91I	CCANNNNNTGG	1 cut(s)	578
Vha464I	CTTAAG	1 cut(s)	203
XapI	RAATTY	3 cut(s)	97, 105, 434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XspI	CTAG	1 cut(s)	1092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.