Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005919

Physical Location & Seq

Genomic Coordinates Reverse (-)

12694361 .. 12698688

Gene Structure 4328 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027557

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGAAGTTCTCTTTTTTCTGCTCGAAGTGTTTATTTCCCCCAGCAGGAATCGTCGATGATAGTAACTTAGCCGAGTACTGGCCGGGAATCACACATAGTTCAATTTCACCCTTCTTTCTCTCTTCTTTTAGGCTGGGAATCACCAGCTTGGTTTTCATTGGAAGATTAAATGACGGAAGAGATGTGGCCGTGAAAGTTCTTTCAGTGGAATCAAGACAAGGTGACAAGGAGTTCATCGCTGAGCTATCATCAGTCTCCAACATTAGTCACGAAAATTTGGTGAAGTTGAACGGCGGTTGCATTGAAGGCCGTCGTAGAATTCTTGTTTACGATTACATGGAACACAACAGCCTCGCTCGTATCTTGCTAGATGACAAAACCAGATCAAAATTGGATTGGAGAGTGCGGAAAGAAATTTGTATAGGAATTGCAACGGGACTTGTCCATATTCATGAAGAGGTTAAACCGCACATTGTACACAGAGACATCAAAGCAAGCAACATACTTTTGGAGAAGAACTTTCAACCAAGAATTTCCGATTTTGGATTATCGAAGCTCTTTCCAGAACACGTTTCTCACATTACTACACGAGTGGCCGGAACTTTAGGTTATCTTGCTCCGGAATATGCGGTCACCGGTCATCTAACGCGGAAATCAGACGTGTACAGTTACGGAGTACTGATTTTGCAGATAGTCAGTGGACGATCGGCAGTTGACTTCGATCTAGAACTTGGAGAACACTATCTTGTCCAAAAGGCATGGGAAATGCACATGGACAACAGACTCTTAGATATAGCGGACTCGACACTTGAGCATGATGGCAACTTTTCAGAGAAGGAAGCTCTCCATTTTCTAAAGGTGGGTCTACATTGTGTACAAGAGAAATGCAACCTCAGGCCAAAAATGTCAGCAGCCATTGAAATGATGATGATCGATCAGAATGACCAGATCAAAGTGAATGATTTCAACAACATGGAAATAAGGCAGCCAGGAGTGATCATCAATAATATGGACTTGAAAATAGCGCAGAGGAAGAATGAAAGAAGCTCAAAATTAAGCATTAGTAGCATGCAATGCCCACAAGTGTACCCTTTTAATACTAGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

370

Amino Acids

41.92

Weight (kDa)

6.95

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	49 - 305	1.8e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	55 - 253	3.5e-36	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15760 FvH4_7g19720 FvH4_7g19720
malus_domestica	MD01G1109700.v1.1 MD04G1098900.v1.1 MD12G1119500.v1.1
prunus_persica	Prupe.2G214600_v2.0.a1 Prupe.6G237400_v2.0.a1 Prupe.6G237400_v2.0.a1
pyrus_communis	pycom01g13680 pycom04g09390 pycom12g11850
rosa_chinensis	RchiOBHm_Chr1g0363561
rosa_laevigata	RLG00000027557
rosa_multiflora	Rmu_sc0000548.1_g000001 Rmu_sc0004871.1_g000014 Rmu_ssc0000433.1_g000008
rosa_roxburghii	Rroxscaffold_4G00293080 Rroxscaffold_6G00411830
rosa_rugosa	Rorug01G0308100 Rorug03G0102000 Rorug03G0102100
rosa_samantha	Rh1BG280300 Rh1CG296400 Rh1DG311500 Rh3DG200700
rosa_wichuraiana	Rw1G028100 Rw3G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	865
AccII	CGCG	1 cut(s)	649
AccIII	TCCGGA	1 cut(s)	619
AciI	CCGC	6 cut(s)	294, 406, 467, 629, 649, 797
AcoI	YGGCCR	3 cut(s)	80, 186, 594
AcsI	RAATTY	4 cut(s)	274, 318, 414, 531
AfaI	GTAC	6 cut(s)	77, 477, 665, 678, 876, 1088
AfiI	CCNNNNNNNGG	2 cut(s)	44, 78
AflIII	ACRYGT	2 cut(s)	568, 660
AgeI	ACCGGT	1 cut(s)	635
AgsI	TTSAA	7 cut(s)	102, 289, 305, 524, 920, 967, 1018
AjiI	CACGTC	1 cut(s)	661
AjnI	CCWGG	1 cut(s)	988
AluBI	AGCT	5 cut(s)	147, 244, 556, 842, 1047
AluI	AGCT	5 cut(s)	147, 244, 556, 842, 1047
Alw26I	GTCTC	2 cut(s)	259, 477
Aor13HI	TCCGGA	1 cut(s)	619
AoxI	GGCC	5 cut(s)	80, 186, 307, 594, 896
ApeKI	GCWGC	2 cut(s)	911, 985
ApoI	RAATTY	4 cut(s)	274, 318, 414, 531
AsiGI	ACCGGT	1 cut(s)	635
Asp700I	GAANNNNTTC	1 cut(s)	962
AspLEI	GCGC	1 cut(s)	1027
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	5 cut(s)	99, 133, 233, 292, 625
AxyI	CCTNAGG	1 cut(s)	893
BaeI	ACNNNNGTAYC	2 cut(s)	1070, 1103
BauI	CACGAG	1 cut(s)	588
BbvI	GCAGC	2 cut(s)	923, 997
BccI	CCATC	1 cut(s)	812
BceAI	ACGGC	3 cut(s)	173, 294, 307
BciT130I	CCWGG	1 cut(s)	990
BclI	TGATCA	1 cut(s)	996
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	2 cut(s)	259, 477
BfaI	CTAG	3 cut(s)	368, 725, 1101
BisI	GCNGC	2 cut(s)	912, 986
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	2 cut(s)	913, 987
BmcAI	AGTACT	2 cut(s)	77, 678
Bme1390I	CCNGG	2 cut(s)	84, 990
BmgBI	CACGTC	1 cut(s)	661
BmrFI	CCNGG	2 cut(s)	84, 990
Bpu1102I	GCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	830
BpuMI	CCSGG	1 cut(s)	84
Bsa29I	ATCGAT	1 cut(s)	933
BsaBI	GATNNNNATC	1 cut(s)	929
BsaWI	WCCGGW	2 cut(s)	619, 635
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 78
Bse118I	RCCGGY	1 cut(s)	635
Bse1I	ACTGG	1 cut(s)	83
Bse21I	CCTNAGG	1 cut(s)	893
Bse3DI	GCAATG	1 cut(s)	1079
Bse8I	GATNNNNATC	1 cut(s)	929
BseAI	TCCGGA	1 cut(s)	619
BseBI	CCWGG	1 cut(s)	990
BseCI	ATCGAT	1 cut(s)	933
BseJI	GATNNNNATC	1 cut(s)	929
BseLI	CCNNNNNNNGG	2 cut(s)	44, 78
BseMI	GCAATG	1 cut(s)	1079
BseMII	CTCAG	2 cut(s)	231, 907
BseNI	ACTGG	1 cut(s)	83
BseXI	GCAGC	2 cut(s)	923, 997
BseYI	CCCAGC	2 cut(s)	40, 133
Bsh1236I	CGCG	1 cut(s)	649
Bsh1285I	CGRYCG	1 cut(s)	707
BshFI	GGCC	5 cut(s)	82, 188, 309, 596, 898
BshTI	ACCGGT	1 cut(s)	635
BshVI	ATCGAT	1 cut(s)	933
BsiEI	CGRYCG	1 cut(s)	707
BsiSI	CCGG	4 cut(s)	83, 597, 620, 636
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	2 cut(s)	44, 78
BsmAI	GTCTC	2 cut(s)	259, 477
BsmFI	GGGAC	1 cut(s)	450
BsnI	GGCC	5 cut(s)	82, 188, 309, 596, 898
Bsp13I	TCCGGA	1 cut(s)	619
Bsp1407I	TGTACA	3 cut(s)	475, 663, 874
Bsp143I	GATC	7 cut(s)	383, 704, 721, 930, 934, 948, 996
Bsp1720I	GCTNAGC	1 cut(s)	240
BspACI	CCGC	6 cut(s)	294, 406, 467, 629, 649, 797
BspANI	GGCC	5 cut(s)	82, 188, 309, 596, 898
BspCNI	CTCAG	2 cut(s)	232, 906
BspDI	ATCGAT	1 cut(s)	933
BspEI	TCCGGA	1 cut(s)	619
BspFNI	CGCG	1 cut(s)	649
BspHI	TCATGA	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	1079
BsrFI	RCCGGY	1 cut(s)	635
BsrGI	TGTACA	3 cut(s)	475, 663, 874
BsrI	ACTGG	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	635
BssMI	GATC	7 cut(s)	383, 704, 721, 930, 934, 948, 996
BssSI	CACGAG	1 cut(s)	588
Bst2BI	CACGAG	1 cut(s)	588
Bst2UI	CCWGG	1 cut(s)	990
Bst4CI	ACNGT	1 cut(s)	668
Bst6I	CTCTTC	3 cut(s)	127, 172, 450
BstAPI	GCANNNNNTGC	1 cut(s)	1074
BstAUI	TGTACA	3 cut(s)	475, 663, 874
BstC8I	GCNNGC	2 cut(s)	496, 1070
BstDEI	CTNAG	4 cut(s)	67, 240, 787, 893
BstEII	GGTNACC	1 cut(s)	631
BstFNI	CGCG	1 cut(s)	649
BstHHI	GCGC	1 cut(s)	1027
BstKTI	GATC	7 cut(s)	386, 707, 724, 933, 937, 951, 999
BstMAI	GTCTC	2 cut(s)	259, 477
BstMBI	GATC	7 cut(s)	383, 704, 721, 930, 934, 948, 996
BstMCI	CGRYCG	1 cut(s)	707
BstMWI	GCNNNNNNNGC	3 cut(s)	306, 1065, 1074
BstNI	CCWGG	1 cut(s)	990
BstNSI	RCATGY	1 cut(s)	1072
BstPI	GGTNACC	1 cut(s)	631
BstSCI	CCNGG	2 cut(s)	82, 988
BstUI	CGCG	1 cut(s)	649
BstV1I	GCAGC	2 cut(s)	923, 997
Bsu15I	ATCGAT	1 cut(s)	933
Bsu36I	CCTNAGG	1 cut(s)	893
BsuRI	GGCC	5 cut(s)	82, 188, 309, 596, 898
BsuTUI	ATCGAT	1 cut(s)	933
BtgZI	GCGATG	1 cut(s)	220
BtrI	CACGTC	1 cut(s)	661
BtsIMutI	CAGTG	2 cut(s)	210, 703
Cac8I	GCNNGC	2 cut(s)	496, 1070
CciI	TCATGA	1 cut(s)	451
CfoI	GCGC	1 cut(s)	1027
Cfr10I	RCCGGY	1 cut(s)	635
ClaI	ATCGAT	1 cut(s)	933
Csp6I	GTAC	6 cut(s)	76, 476, 664, 677, 875, 1087
CspAI	ACCGGT	1 cut(s)	635
CviAII	CATG	7 cut(s)	337, 452, 759, 772, 815, 973, 1069
CviQI	GTAC	6 cut(s)	76, 476, 664, 677, 875, 1087
DdeI	CTNAG	4 cut(s)	67, 240, 787, 893
DpnI	GATC	7 cut(s)	385, 706, 723, 932, 936, 950, 998
DpnII	GATC	7 cut(s)	383, 704, 721, 930, 934, 948, 996
EaeI	YGGCCR	3 cut(s)	80, 186, 594
Eam1104I	CTCTTC	3 cut(s)	127, 172, 450
EarI	CTCTTC	3 cut(s)	127, 172, 450
Eco81I	CCTNAGG	1 cut(s)	893
Eco91I	GGTNACC	1 cut(s)	631
EcoO65I	GGTNACC	1 cut(s)	631
EcoRI	GAATTC	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	988
FaeI	CATG	7 cut(s)	340, 455, 762, 775, 818, 976, 1072
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	7 cut(s)	336, 451, 758, 771, 814, 972, 1068
FbaI	TGATCA	1 cut(s)	996
FblI	GTMKAC	1 cut(s)	865
Fnu4HI	GCNGC	2 cut(s)	912, 986
Fsp4HI	GCNGC	2 cut(s)	912, 986
FspBI	CTAG	3 cut(s)	368, 725, 1101
GlaI	GCGC	1 cut(s)	1026
GluI	GCNGC	2 cut(s)	912, 986
GsaI	CCCAGC	2 cut(s)	44, 137
HaeIII	GGCC	5 cut(s)	82, 188, 309, 596, 898
HapII	CCGG	4 cut(s)	83, 597, 620, 636
HhaI	GCGC	1 cut(s)	1027
Hin1II	CATG	7 cut(s)	340, 455, 762, 775, 818, 976, 1072
Hin6I	GCGC	1 cut(s)	1025
HinP1I	GCGC	1 cut(s)	1025
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HinfI	GANTC	6 cut(s)	48, 87, 138, 209, 783, 800
HpaII	CCGG	4 cut(s)	83, 597, 620, 636
HphI	GGTGA	5 cut(s)	99, 133, 233, 292, 625
Hpy166II	GTNNAC	8 cut(s)	328, 478, 664, 701, 715, 866, 875, 1087
Hpy188I	TCNGA	4 cut(s)	538, 658, 832, 939
Hpy188III	TCNNGA	6 cut(s)	213, 269, 452, 563, 620, 725
Hpy8I	GTNNAC	8 cut(s)	328, 478, 664, 701, 715, 866, 875, 1087
Hpy99I	CGWCG	2 cut(s)	56, 315
HpyAV	CCTTC	3 cut(s)	121, 299, 829
HpyCH4III	ACNGT	1 cut(s)	668
HpyCH4IV	ACGT	2 cut(s)	570, 660
HpyCH4V	TGCA	6 cut(s)	300, 431, 688, 769, 888, 1072
HpyF10VI	GCNNNNNNNGC	3 cut(s)	306, 1065, 1074
HpyF3I	CTNAG	4 cut(s)	67, 240, 787, 893
HpySE526I	ACGT	2 cut(s)	570, 660
Hsp92II	CATG	7 cut(s)	340, 455, 762, 775, 818, 976, 1072
HspAI	GCGC	1 cut(s)	1025
Kpn2I	TCCGGA	1 cut(s)	619
Ksp22I	TGATCA	1 cut(s)	996
Kzo9I	GATC	7 cut(s)	383, 704, 721, 930, 934, 948, 996
LmnI	GCTCC	1 cut(s)	622
Lsp1109I	GCAGC	2 cut(s)	923, 997
MaeI	CTAG	3 cut(s)	368, 725, 1101
MaeII	ACGT	2 cut(s)	570, 660
MaeIII	GTNAC	5 cut(s)	62, 221, 266, 631, 668
MalI	GATC	7 cut(s)	385, 706, 723, 932, 936, 950, 998
MboI	GATC	7 cut(s)	383, 704, 721, 930, 934, 948, 996
MboII	GAAGA	6 cut(s)	114, 174, 189, 467, 526, 1045
MluCI	AATT	8 cut(s)	102, 274, 318, 389, 414, 426, 531, 1052
MlyI	GAGTC	2 cut(s)	777, 794
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	4 cut(s)	362, 451, 902, 1023
MroI	TCCGGA	1 cut(s)	619
MroXI	GAANNNNTTC	1 cut(s)	962
MseI	TTAA	5 cut(s)	167, 462, 1055, 1095, 1108
MslI	CAYNNNNRTG	2 cut(s)	450, 920
MspI	CCGG	4 cut(s)	83, 597, 620, 636
MspR9I	CCNGG	2 cut(s)	84, 990
MvaI	CCWGG	1 cut(s)	990
MvnI	CGCG	1 cut(s)	649
MwoI	GCNNNNNNNGC	3 cut(s)	306, 1065, 1074
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	7 cut(s)	383, 704, 721, 930, 934, 948, 996
NlaIII	CATG	7 cut(s)	340, 455, 762, 775, 818, 976, 1072
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	3 cut(s)	221, 266, 631
NspI	RCATGY	1 cut(s)	1072
PaeI	GCATGC	1 cut(s)	1072
PagI	TCATGA	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	962
PfeI	GAWTC	4 cut(s)	48, 87, 138, 209
PinAI	ACCGGT	1 cut(s)	635
PkrI	GCNGC	2 cut(s)	913, 987
Ple19I	CGATCG	1 cut(s)	707
PleI	GAGTC	2 cut(s)	777, 794
PpsI	GAGTC	2 cut(s)	777, 794
Psp6I	CCWGG	1 cut(s)	988
PspEI	GGTNACC	1 cut(s)	631
PspFI	CCCAGC	2 cut(s)	40, 133
PspGI	CCWGG	1 cut(s)	988
PvuI	CGATCG	1 cut(s)	707
RsaI	GTAC	6 cut(s)	77, 477, 665, 678, 876, 1088
RsaNI	GTAC	6 cut(s)	76, 476, 664, 677, 875, 1087
RseI	CAYNNNNRTG	2 cut(s)	450, 920
SaqAI	TTAA	5 cut(s)	167, 462, 1055, 1095, 1108
SatI	GCNGC	2 cut(s)	912, 986
Sau3AI	GATC	7 cut(s)	383, 704, 721, 930, 934, 948, 996
ScaI	AGTACT	2 cut(s)	77, 678
SchI	GAGTC	2 cut(s)	777, 794
ScrFI	CCNGG	2 cut(s)	84, 990
SmiMI	CAYNNNNRTG	2 cut(s)	450, 920
SmlI	CTYRAG	1 cut(s)	809
SmoI	CTYRAG	1 cut(s)	809
SphI	GCATGC	1 cut(s)	1072
Sse9I	AATT	8 cut(s)	102, 274, 318, 389, 414, 426, 531, 1052
SsiI	CCGC	6 cut(s)	294, 406, 467, 629, 649, 797
SspMI	CTAG	3 cut(s)	368, 725, 1101
StyD4I	CCNGG	2 cut(s)	82, 988
TaaI	ACNGT	1 cut(s)	668
TaiI	ACGT	2 cut(s)	573, 663
TaqI	TCGA	6 cut(s)	23, 54, 551, 720, 803, 933
TasI	AATT	8 cut(s)	102, 274, 318, 389, 414, 426, 531, 1052
TatI	WGTACW	5 cut(s)	75, 475, 663, 676, 874
TfiI	GAWTC	4 cut(s)	48, 87, 138, 209
Tru1I	TTAA	5 cut(s)	167, 462, 1055, 1095, 1108
Tru9I	TTAA	5 cut(s)	167, 462, 1055, 1095, 1108
TscAI	CASTG	2 cut(s)	210, 703
TseFI	GTSAC	3 cut(s)	221, 266, 631
TseI	GCWGC	2 cut(s)	911, 985
Tsp45I	GTSAC	3 cut(s)	221, 266, 631
TspDTI	ATGAA	6 cut(s)	17, 145, 223, 440, 468, 1053
TspGWI	ACGGA	2 cut(s)	189, 687
TspRI	CASTG	2 cut(s)	210, 703
XapI	RAATTY	4 cut(s)	274, 318, 414, 531
XbaI	TCTAGA	1 cut(s)	724
XceI	RCATGY	1 cut(s)	1072
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	865
XmnI	GAANNNNTTC	1 cut(s)	962
XspI	CTAG	3 cut(s)	368, 725, 1101
ZrmI	AGTACT	2 cut(s)	77, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.