Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005919

Physical Location & Seq

Genomic Coordinates Forward (+)

16199406 .. 16202275

Gene Structure 2870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g19720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGATAGTAACTTACCTGTTTCTTCAAAATGTCCACGCCTTCTCATACGAAGAATTGAAAGTTGCCACCAATGAGTTTAATCCCTCCAATAAAATTGGTGAAGGCGGATTTGGAACTGTCTACAAGGGAAGATTAAATGACGGAAGAGATGTGGCCGTGAAAGTTCTTTCAGTAGAATCAAGACAAGGTGACAGGGAGTTCATGTCGGAGCTATCATCAGTCTCCAACATTCGACATGAAAATTTGGTGCAGTTGCACGGTGGTTGCATCGAAGGCCGTCGTCGAATTCTTGTTTACGAATACATGGAACACAACAGCCTCGCTCGCATCTTGCTAGGTGATGACAAACTAAGATCAAAATTAAATTGGAGAGTGCGAAAAGAAATTTGTATAGGAATTGCACGAGGACTTTTCCATATTCATGAAGAGGTTAAACCACACATCGTACACAGAGACATCAAAGCAAGCAACATACTAATGGAGAAGAACTTCAATCCAAGAATCTCCGATTTCGGACTATCGAAGCTCTTTCCAGAACACGTTTCTCACATCACTACACGAGTGGCCGGAACATTAGGCTATCTTGCTCCGGAATATGCCGTTTCCGGTCATCTAACACGGAAATCAGACGTGTACAGTTACGGTGTACTGATTTTGCAAATAGTCAGTGGACGATCGGCAGTTGACTTTGATATAGAACTTGGAGAACACTATCTTGTCCAAAAGGCATGGGAAATGCATAAGGACAACAGGCTCGTAGATATAATCGACTCGACACTTGAGCATGATGGCAACTTCTCAGAGGAGGAAGCTATCCATTTCCTAAAGGTGGGTCTACTATGTGTACAAGAGAAATGCAACCTCAGGCCAAAAATGTCAGCAGCCATTGAAATGATGATGATCGATCAGAACGACCAGATCAAAGTAAATGCTTTCAACAACGTGGAAATACCGCAGCCAGGAGTGATCAATAATAATGACTTGAAAATAGCTCCAAGGAAGAGTGAAAGTAGCTCAAAATCCAGCACGAGCAGCATGCAGAGCTCTCAAGTGTACCGGTTTAATTCTAGAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

359

Amino Acids

40.67

Weight (kDa)

6.96

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	28 - 295	5.3e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	29 - 293	4e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15760 FvH4_7g19720 FvH4_7g19720
malus_domestica	MD01G1109700.v1.1 MD04G1098900.v1.1 MD12G1119500.v1.1
prunus_persica	Prupe.2G214600_v2.0.a1 Prupe.6G237400_v2.0.a1 Prupe.6G237400_v2.0.a1
pyrus_communis	pycom01g13680 pycom04g09390 pycom12g11850
rosa_chinensis	RchiOBHm_Chr1g0363561
rosa_laevigata	RLG00000027557
rosa_multiflora	Rmu_sc0000548.1_g000001 Rmu_sc0004871.1_g000014 Rmu_ssc0000433.1_g000008
rosa_roxburghii	Rroxscaffold_4G00293080 Rroxscaffold_6G00411830
rosa_rugosa	Rorug01G0308100 Rorug03G0102000 Rorug03G0102100
rosa_samantha	Rh1BG280300 Rh1CG296400 Rh1DG311500 Rh3DG200700
rosa_wichuraiana	Rw1G028100 Rw3G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	120, 835
AccIII	TCCGGA	1 cut(s)	589
AciI	CCGC	2 cut(s)	105, 953
AcoI	YGGCCR	2 cut(s)	153, 564
AcsI	RAATTY	3 cut(s)	241, 285, 384
AfaI	GTAC	5 cut(s)	447, 635, 648, 846, 1055
AfiI	CCNNNNNNNGG	2 cut(s)	829, 959
AflIII	ACRYGT	2 cut(s)	538, 630
AgeI	ACCGGT	1 cut(s)	1056
AgsI	TTSAA	6 cut(s)	26, 58, 493, 890, 937, 985
AjiI	CACGTC	1 cut(s)	631
AjnI	CCWGG	1 cut(s)	958
AjuI	GAANNNNNNNTTGG	2 cut(s)	93, 125
AluBI	AGCT	6 cut(s)	211, 526, 812, 992, 1014, 1044
AluI	AGCT	6 cut(s)	211, 526, 812, 992, 1014, 1044
Alw21I	GWGCWC	1 cut(s)	1046
Alw26I	GTCTC	2 cut(s)	226, 447
Aor13HI	TCCGGA	1 cut(s)	589
AoxI	GGCC	4 cut(s)	153, 274, 564, 866
ApeKI	GCWGC	3 cut(s)	881, 955, 1032
ApoI	RAATTY	3 cut(s)	241, 285, 384
AsiGI	ACCGGT	1 cut(s)	1056
Asp700I	GAANNNNTTC	1 cut(s)	488
AsuHPI	GGTGA	3 cut(s)	110, 200, 350
AxyI	CCTNAGG	1 cut(s)	863
BanII	GRGCYC	1 cut(s)	1046
BauI	CACGAG	3 cut(s)	402, 558, 1027
Bbv12I	GWGCWC	1 cut(s)	1046
BbvI	GCAGC	3 cut(s)	893, 967, 1044
BccI	CCATC	1 cut(s)	782
BceAI	ACGGC	3 cut(s)	140, 261, 584
BcgI	CGANNNNNNTGC	2 cut(s)	1018, 1052
BciT130I	CCWGG	1 cut(s)	960
BclI	TGATCA	1 cut(s)	966
BcoDI	GTCTC	2 cut(s)	226, 447
BfaI	CTAG	2 cut(s)	335, 1068
BisI	GCNGC	3 cut(s)	882, 956, 1033
BlsI	GCNGC	3 cut(s)	883, 957, 1034
Bme1390I	CCNGG	1 cut(s)	960
BmgBI	CACGTC	1 cut(s)	631
BmrFI	CCNGG	1 cut(s)	960
BmsI	GCATC	2 cut(s)	276, 336
BpuEI	CTTGAG	2 cut(s)	800, 1032
Bsa29I	ATCGAT	1 cut(s)	903
BsaBI	GATNNNNATC	1 cut(s)	899
BsaJI	CCNNGG	1 cut(s)	995
BsaWI	WCCGGW	3 cut(s)	589, 605, 1056
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	2 cut(s)	829, 959
Bse118I	RCCGGY	1 cut(s)	1056
Bse21I	CCTNAGG	1 cut(s)	863
Bse8I	GATNNNNATC	1 cut(s)	899
BseAI	TCCGGA	1 cut(s)	589
BseBI	CCWGG	1 cut(s)	960
BseCI	ATCGAT	1 cut(s)	903
BseDI	CCNNGG	1 cut(s)	995
BseJI	GATNNNNATC	1 cut(s)	899
BseLI	CCNNNNNNNGG	2 cut(s)	829, 959
BseMII	CTCAG	2 cut(s)	813, 877
BseRI	GAGGAG	1 cut(s)	818
BseXI	GCAGC	3 cut(s)	893, 967, 1044
BsgI	GTGCAG	1 cut(s)	269
Bsh1285I	CGRYCG	1 cut(s)	677
BshFI	GGCC	4 cut(s)	155, 276, 566, 868
BshTI	ACCGGT	1 cut(s)	1056
BshVI	ATCGAT	1 cut(s)	903
BsiEI	CGRYCG	1 cut(s)	677
BsiHKAI	GWGCWC	1 cut(s)	1046
BsiSI	CCGG	4 cut(s)	567, 590, 606, 1057
BslI	CCNNNNNNNGG	2 cut(s)	829, 959
BsmAI	GTCTC	2 cut(s)	226, 447
BsnI	GGCC	4 cut(s)	155, 276, 566, 868
Bsp1286I	GDGCHC	1 cut(s)	1046
Bsp13I	TCCGGA	1 cut(s)	589
Bsp1407I	TGTACA	2 cut(s)	633, 844
Bsp143I	GATC	6 cut(s)	353, 674, 900, 904, 918, 966
BspACI	CCGC	2 cut(s)	105, 953
BspANI	GGCC	4 cut(s)	155, 276, 566, 868
BspCNI	CTCAG	2 cut(s)	812, 876
BspDI	ATCGAT	1 cut(s)	903
BspEI	TCCGGA	1 cut(s)	589
BspHI	TCATGA	1 cut(s)	421
BsrFI	RCCGGY	1 cut(s)	1056
BsrGI	TGTACA	2 cut(s)	633, 844
BssAI	RCCGGY	1 cut(s)	1056
BssECI	CCNNGG	1 cut(s)	995
BssMI	GATC	6 cut(s)	353, 674, 900, 904, 918, 966
BssSI	CACGAG	3 cut(s)	402, 558, 1027
BssT1I	CCWWGG	1 cut(s)	995
Bst2BI	CACGAG	3 cut(s)	402, 558, 1027
Bst2UI	CCWGG	1 cut(s)	960
Bst4CI	ACNGT	4 cut(s)	118, 260, 638, 644
Bst6I	CTCTTC	3 cut(s)	139, 420, 995
BstAUI	TGTACA	2 cut(s)	633, 844
BstC8I	GCNNGC	3 cut(s)	325, 466, 1037
BstDEI	CTNAG	3 cut(s)	350, 799, 863
BstKTI	GATC	6 cut(s)	356, 677, 903, 907, 921, 969
BstMAI	GTCTC	2 cut(s)	226, 447
BstMBI	GATC	6 cut(s)	353, 674, 900, 904, 918, 966
BstMCI	CGRYCG	1 cut(s)	677
BstMWI	GCNNNNNNNGC	4 cut(s)	273, 324, 1032, 1041
BstNI	CCWGG	1 cut(s)	960
BstNSI	RCATGY	1 cut(s)	1039
BstSCI	CCNGG	1 cut(s)	958
BstV1I	GCAGC	3 cut(s)	893, 967, 1044
Bsu15I	ATCGAT	1 cut(s)	903
Bsu36I	CCTNAGG	1 cut(s)	863
BsuRI	GGCC	4 cut(s)	155, 276, 566, 868
BsuTUI	ATCGAT	1 cut(s)	903
BtrI	CACGTC	1 cut(s)	631
BtsIMutI	CAGTG	1 cut(s)	673
Cac8I	GCNNGC	3 cut(s)	325, 466, 1037
CciI	TCATGA	1 cut(s)	421
Cfr10I	RCCGGY	1 cut(s)	1056
ClaI	ATCGAT	1 cut(s)	903
Csp6I	GTAC	5 cut(s)	446, 634, 647, 845, 1054
CspAI	ACCGGT	1 cut(s)	1056
CviAII	CATG	7 cut(s)	202, 236, 304, 422, 729, 785, 1036
CviQI	GTAC	5 cut(s)	446, 634, 647, 845, 1054
DdeI	CTNAG	3 cut(s)	350, 799, 863
DpnI	GATC	6 cut(s)	355, 676, 902, 906, 920, 968
DpnII	GATC	6 cut(s)	353, 674, 900, 904, 918, 966
EaeI	YGGCCR	2 cut(s)	153, 564
Eam1104I	CTCTTC	3 cut(s)	139, 420, 995
EarI	CTCTTC	3 cut(s)	139, 420, 995
EciI	GGCGGA	1 cut(s)	120
Ecl136II	GAGCTC	1 cut(s)	1044
Eco130I	CCWWGG	1 cut(s)	995
Eco24I	GRGCYC	1 cut(s)	1046
Eco53kI	GAGCTC	1 cut(s)	1044
Eco81I	CCTNAGG	1 cut(s)	863
EcoICRI	GAGCTC	1 cut(s)	1044
EcoRI	GAATTC	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	958
EcoT14I	CCWWGG	1 cut(s)	995
EcoT22I	ATGCAT	1 cut(s)	741
EcoT38I	GRGCYC	1 cut(s)	1046
ErhI	CCWWGG	1 cut(s)	995
FaeI	CATG	7 cut(s)	205, 239, 307, 425, 732, 788, 1039
FatI	CATG	7 cut(s)	201, 235, 303, 421, 728, 784, 1035
FbaI	TGATCA	1 cut(s)	966
FblI	GTMKAC	2 cut(s)	120, 835
Fnu4HI	GCNGC	3 cut(s)	882, 956, 1033
FriOI	GRGCYC	1 cut(s)	1046
Fsp4HI	GCNGC	3 cut(s)	882, 956, 1033
FspBI	CTAG	2 cut(s)	335, 1068
GluI	GCNGC	3 cut(s)	882, 956, 1033
HaeIII	GGCC	4 cut(s)	155, 276, 566, 868
HapII	CCGG	4 cut(s)	567, 590, 606, 1057
Hin1II	CATG	7 cut(s)	205, 239, 307, 425, 732, 788, 1039
HincII	GTYRAC	1 cut(s)	685
HindII	GTYRAC	1 cut(s)	685
HinfI	GANTC	4 cut(s)	176, 501, 770, 1071
HpaII	CCGG	4 cut(s)	567, 590, 606, 1057
HphI	GGTGA	3 cut(s)	110, 200, 350
Hpy188I	TCNGA	6 cut(s)	208, 508, 515, 628, 802, 909
Hpy188III	TCNNGA	5 cut(s)	180, 422, 533, 590, 1068
Hpy99I	CGWCG	2 cut(s)	282, 285
HpyAV	CCTTC	3 cut(s)	49, 95, 266
HpyCH4III	ACNGT	4 cut(s)	118, 260, 638, 644
HpyCH4IV	ACGT	3 cut(s)	540, 630, 942
HpyCH4V	TGCA	8 cut(s)	250, 256, 267, 401, 658, 739, 858, 1039
HpyF10VI	GCNNNNNNNGC	4 cut(s)	273, 324, 1032, 1041
HpyF3I	CTNAG	3 cut(s)	350, 799, 863
HpySE526I	ACGT	3 cut(s)	540, 630, 942
Hsp92II	CATG	7 cut(s)	205, 239, 307, 425, 732, 788, 1039
Kpn2I	TCCGGA	1 cut(s)	589
Ksp22I	TGATCA	1 cut(s)	966
Kzo9I	GATC	6 cut(s)	353, 674, 900, 904, 918, 966
LmnI	GCTCC	3 cut(s)	208, 592, 997
Lsp1109I	GCAGC	3 cut(s)	893, 967, 1044
LweI	GCATC	2 cut(s)	276, 336
MaeI	CTAG	2 cut(s)	335, 1068
MaeII	ACGT	3 cut(s)	540, 630, 942
MaeIII	GTNAC	3 cut(s)	7, 188, 638
MalI	GATC	6 cut(s)	355, 676, 902, 906, 920, 968
MboI	GATC	6 cut(s)	353, 674, 900, 904, 918, 966
MboII	GAAGA	7 cut(s)	14, 62, 141, 156, 437, 496, 1012
MhlI	GDGCHC	1 cut(s)	1046
MluCI	AATT	9 cut(s)	53, 93, 241, 285, 359, 364, 384, 396, 1063
MlyI	GAGTC	1 cut(s)	764
MmeI	TCCRAC	2 cut(s)	186, 249
MnlI	CCTC	7 cut(s)	94, 329, 398, 421, 796, 799, 872
Mph1103I	ATGCAT	1 cut(s)	741
MroI	TCCGGA	1 cut(s)	589
MroXI	GAANNNNTTC	1 cut(s)	488
MseI	TTAA	5 cut(s)	78, 134, 362, 432, 1062
MslI	CAYNNNNRTG	3 cut(s)	420, 476, 890
MspI	CCGG	4 cut(s)	567, 590, 606, 1057
MspR9I	CCNGG	1 cut(s)	960
MvaI	CCWGG	1 cut(s)	960
MwoI	GCNNNNNNNGC	4 cut(s)	273, 324, 1032, 1041
NdeII	GATC	6 cut(s)	353, 674, 900, 904, 918, 966
NlaIII	CATG	7 cut(s)	205, 239, 307, 425, 732, 788, 1039
NmuCI	GTSAC	1 cut(s)	188
NsiI	ATGCAT	1 cut(s)	741
NspI	RCATGY	1 cut(s)	1039
PaeI	GCATGC	1 cut(s)	1039
PagI	TCATGA	1 cut(s)	421
PcsI	WCGNNNNNNNCGW	1 cut(s)	909
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	2 cut(s)	176, 501
PinAI	ACCGGT	1 cut(s)	1056
PkrI	GCNGC	3 cut(s)	883, 957, 1034
Ple19I	CGATCG	1 cut(s)	677
PleI	GAGTC	1 cut(s)	764
PpsI	GAGTC	1 cut(s)	764
Psp124BI	GAGCTC	1 cut(s)	1046
Psp6I	CCWGG	1 cut(s)	958
PspGI	CCWGG	1 cut(s)	958
PvuI	CGATCG	1 cut(s)	677
RsaI	GTAC	5 cut(s)	447, 635, 648, 846, 1055
RsaNI	GTAC	5 cut(s)	446, 634, 647, 845, 1054
RseI	CAYNNNNRTG	3 cut(s)	420, 476, 890
SacI	GAGCTC	1 cut(s)	1046
SaqAI	TTAA	5 cut(s)	78, 134, 362, 432, 1062
SatI	GCNGC	3 cut(s)	882, 956, 1033
Sau3AI	GATC	6 cut(s)	353, 674, 900, 904, 918, 966
SchI	GAGTC	1 cut(s)	764
ScrFI	CCNGG	1 cut(s)	960
SduI	GDGCHC	1 cut(s)	1046
SfaNI	GCATC	2 cut(s)	276, 336
SmiMI	CAYNNNNRTG	3 cut(s)	420, 476, 890
SmlI	CTYRAG	2 cut(s)	779, 1047
SmoI	CTYRAG	2 cut(s)	779, 1047
SphI	GCATGC	1 cut(s)	1039
Sse9I	AATT	9 cut(s)	53, 93, 241, 285, 359, 364, 384, 396, 1063
SsiI	CCGC	2 cut(s)	105, 953
SspMI	CTAG	2 cut(s)	335, 1068
SstI	GAGCTC	1 cut(s)	1046
StyD4I	CCNGG	1 cut(s)	958
StyI	CCWWGG	1 cut(s)	995
TaaI	ACNGT	4 cut(s)	118, 260, 638, 644
TaiI	ACGT	3 cut(s)	543, 633, 945
TaqI	TCGA	7 cut(s)	232, 270, 283, 521, 768, 773, 903
TasI	AATT	9 cut(s)	53, 93, 241, 285, 359, 364, 384, 396, 1063
TatI	WGTACW	3 cut(s)	633, 646, 844
TfiI	GAWTC	2 cut(s)	176, 501
Tru1I	TTAA	5 cut(s)	78, 134, 362, 432, 1062
Tru9I	TTAA	5 cut(s)	78, 134, 362, 432, 1062
TscAI	CASTG	1 cut(s)	673
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	3 cut(s)	881, 955, 1032
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	4 cut(s)	190, 252, 410, 438
TspGWI	ACGGA	2 cut(s)	156, 634
TspRI	CASTG	1 cut(s)	673
XapI	RAATTY	3 cut(s)	241, 285, 384
XbaI	TCTAGA	1 cut(s)	1067
XceI	RCATGY	1 cut(s)	1039
XmiI	GTMKAC	2 cut(s)	120, 835
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	2 cut(s)	335, 1068
Zsp2I	ATGCAT	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.