Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005919

Physical Location & Seq

Genomic Coordinates Forward (+)

22232853 .. 22234047

Gene Structure 1195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1109700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAGGAAGGGAGGTGAGGAGAAAATTAGATCGAAATTAGGTTGGAGGGCACGACGAGAAATTTGTCTTGGGATTGCTAGGGGCCTTGTTCACATTCATGAGGAGGTGAAACCACATATTGTGCACAGAGATATCAAAGCCAGCAATATACTTTTGGAGAAGAACTTTCATCCAAGAATTTCAGATTTTGGGTTATCAAAACTATTTCCACAGAACATTTCTCACATTAGTACACGAGTGGCTGGAACATTAGGTTATTTGGCTCCGGAGTATGCAATCACTGGACATTTAACGCGAAAATCAGACGTATACAGTTTCGGAGTGTTGATTTTGCAAATAGTCAGTGGACGATCGATAGTTGACTTTGATATGGAACTTGGAGAACACTATCTTGTCGAAAAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

136

Amino Acids

15.33

Weight (kDa)

9.51

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	11 - 115	1.2e-20	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	16 - 121	1.1e-24	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15760 FvH4_7g19720 FvH4_7g19720
malus_domestica	MD01G1109700.v1.1 MD04G1098900.v1.1 MD12G1119500.v1.1
prunus_persica	Prupe.2G214600_v2.0.a1 Prupe.6G237400_v2.0.a1 Prupe.6G237400_v2.0.a1
pyrus_communis	pycom01g13680 pycom04g09390 pycom12g11850
rosa_chinensis	RchiOBHm_Chr1g0363561
rosa_laevigata	RLG00000027557
rosa_multiflora	Rmu_sc0000548.1_g000001 Rmu_sc0004871.1_g000014 Rmu_ssc0000433.1_g000008
rosa_roxburghii	Rroxscaffold_4G00293080 Rroxscaffold_6G00411830
rosa_rugosa	Rorug01G0308100 Rorug03G0102000 Rorug03G0102100
rosa_samantha	Rh1BG280300 Rh1CG296400 Rh1DG311500 Rh3DG200700
rosa_wichuraiana	Rw1G028100 Rw3G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	309
AccII	CGCG	1 cut(s)	295
AccIII	TCCGGA	1 cut(s)	265
AcsI	RAATTY	2 cut(s)	60, 177
AfaI	GTAC	1 cut(s)	232
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
Alw21I	GWGCWC	1 cut(s)	126
Alw44I	GTGCAC	1 cut(s)	122
Aor13HI	TCCGGA	1 cut(s)	265
AoxI	GGCC	1 cut(s)	82
ApaLI	GTGCAC	1 cut(s)	122
ApoI	RAATTY	2 cut(s)	60, 177
ArsI	GACNNNNNNTTYG	2 cut(s)	45, 77
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	2 cut(s)	26, 118
BaeGI	GKGCMC	2 cut(s)	52, 126
BauI	CACGAG	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	2 cut(s)	83, 264
Bsa29I	ATCGAT	1 cut(s)	353
BsaWI	WCCGGW	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	286
BseAI	TCCGGA	1 cut(s)	265
BseCI	ATCGAT	1 cut(s)	353
BseGI	GGATG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	2 cut(s)	32, 116
BseSI	GKGCMC	2 cut(s)	52, 126
Bsh1236I	CGCG	1 cut(s)	295
Bsh1285I	CGRYCG	1 cut(s)	353
BshFI	GGCC	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	353
BsiEI	CGRYCG	1 cut(s)	353
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	266
BsnI	GGCC	1 cut(s)	84
Bsp1286I	GDGCHC	2 cut(s)	52, 126
Bsp13I	TCCGGA	1 cut(s)	265
Bsp143I	GATC	2 cut(s)	29, 350
BspANI	GGCC	1 cut(s)	84
BspDI	ATCGAT	1 cut(s)	353
BspEI	TCCGGA	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	295
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	83, 264
BsrI	ACTGG	1 cut(s)	286
BssMI	GATC	2 cut(s)	29, 350
BssNAI	GTATAC	1 cut(s)	310
BssSI	CACGAG	1 cut(s)	234
Bst1107I	GTATAC	1 cut(s)	310
Bst2BI	CACGAG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	142
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	295
BstKTI	GATC	2 cut(s)	32, 353
BstMBI	GATC	2 cut(s)	29, 350
BstMCI	CGRYCG	1 cut(s)	353
BstSLI	GKGCMC	2 cut(s)	52, 126
BstUI	CGCG	1 cut(s)	295
BstZ17I	GTATAC	1 cut(s)	310
Bsu15I	ATCGAT	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	84
BsuTUI	ATCGAT	1 cut(s)	353
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	2 cut(s)	279, 349
Cac8I	GCNNGC	1 cut(s)	142
CciI	TCATGA	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	82
ClaI	ATCGAT	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	4 cut(s)	84, 140, 242, 263
CviKI_1	RGCY	4 cut(s)	84, 140, 242, 263
CviQI	GTAC	1 cut(s)	231
DpnI	GATC	2 cut(s)	31, 352
DpnII	GATC	2 cut(s)	29, 350
Eco32I	GATATC	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRV	GATATC	1 cut(s)	133
FaeI	CATG	1 cut(s)	101
FaiI	YATR	7 cut(s)	99, 117, 149, 273, 310, 371, 406
FatI	CATG	1 cut(s)	97
FblI	GTMKAC	1 cut(s)	309
FokI	GGATG	1 cut(s)	156
FspBI	CTAG	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	1 cut(s)	266
Hin1II	CATG	1 cut(s)	101
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	2 cut(s)	26, 118
Hpy166II	GTNNAC	6 cut(s)	91, 124, 233, 310, 347, 361
Hpy188I	TCNGA	3 cut(s)	184, 304, 320
Hpy188III	TCNNGA	2 cut(s)	98, 266
Hpy8I	GTNNAC	6 cut(s)	91, 124, 233, 310, 347, 361
Hpy99I	CGWCG	1 cut(s)	57
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	3 cut(s)	124, 275, 334
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	101
Kpn2I	TCCGGA	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	29, 350
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	4 cut(s)	154, 228, 267, 279
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	306
MalI	GATC	2 cut(s)	31, 352
MboI	GATC	2 cut(s)	29, 350
MboII	GAAGA	1 cut(s)	172
MhlI	GDGCHC	2 cut(s)	52, 126
MluCI	AATT	4 cut(s)	24, 35, 60, 177
MmeI	TCCRAC	1 cut(s)	23
MnlI	CCTC	5 cut(s)	5, 10, 39, 94, 97
MroI	TCCGGA	1 cut(s)	265
MseI	TTAA	1 cut(s)	290
MslI	CAYNNNNRTG	1 cut(s)	96
MspI	CCGG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	295
NdeII	GATC	2 cut(s)	29, 350
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	2 cut(s)	83, 264
PagI	TCATGA	1 cut(s)	97
Ple19I	CGATCG	1 cut(s)	353
PspN4I	GGNNCC	2 cut(s)	83, 264
PspPI	GGNCC	1 cut(s)	82
PvuI	CGATCG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	290
Sau3AI	GATC	2 cut(s)	29, 350
Sau96I	GGNCC	1 cut(s)	82
SduI	GDGCHC	2 cut(s)	52, 126
SetI	ASST	6 cut(s)	16, 43, 108, 256, 309, 405
SmiMI	CAYNNNNRTG	1 cut(s)	96
Sse9I	AATT	4 cut(s)	24, 35, 60, 177
SspMI	CTAG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	3 cut(s)	32, 353, 396
TasI	AATT	4 cut(s)	24, 35, 60, 177
TatI	WGTACW	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	2 cut(s)	286, 349
TspDTI	ATGAA	2 cut(s)	86, 158
TspRI	CASTG	2 cut(s)	286, 349
VneI	GTGCAC	1 cut(s)	122
XapI	RAATTY	2 cut(s)	60, 177
XmiI	GTMKAC	1 cut(s)	309
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.