Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005919

Physical Location & Seq

Genomic Coordinates Forward (+)

53835200 .. 53837183

Gene Structure 1984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG311500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCACGAATGTCCGAGTTATATTTTTACTAAAATGTGCTTTGATTGGACTCTGAAGGGAAGATTAAATAACGGAAGAGATGTGGCCGTGAAAGTTCTTTCAGTGGAATCAAGACAAGGTGACAAGGAGTTCATGGCTGAGCTATCATCAGTCTCCAACATTAGTCACGAAAATTTGGTGAAGTTGAACGGCGGTTGCATTGAAGGCCGTCGTAGAATTCTTGTTTACGATTACATGGAACACAACAGCCTCGCTCGTATCTTGCTAGTTGTTCCTCTTGTTCTTGATGAGGGTAGAGGTTATCTTGCTCCGGAATATGCGGTCACCGGTCATCTAACACGGAAATCAGACGTGTACAGTTACGGAGTACTGATTTTGCAGATAGTCAGTGGACGATCGGCAGTTGACTTCGATCTAGAACTTGGAGAACACTATCTTGTCCAAAAGGCATGGGAAATGCACATGGACAACAGACTCTTAGATATAGCGGACTCGACACTTCAGCATGACGGCAACTTTTCAGAGAAGGAAGCTCTCCATTTTCTAAAGGTGGGTCTACATTGTGTACAAGAGAAATGCAACCTCAGGCCAAAAATGTCAGCAGCCATTGAAATGATGATGATCGATCAGAATGATCAGATCAAAGTGAATGATTTCAACAACGTGGAAATAAGGCAGCCAGGAGTGATCATCAATAATATGGACTTGAAAATAGCGCGGAGGAAGAATGAAAGAAGCTCAAAATTAAGCATTAGTAGCATGCAATGCCCACAAGTGTACCCTTTTAATACTAGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

266

Amino Acids

30.42

Weight (kDa)

6.51

Isoelectric Point (pI)

49.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	23 - 88	4.6e-10	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	23 - 88	7.4e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15760 FvH4_7g19720 FvH4_7g19720
malus_domestica	MD01G1109700.v1.1 MD04G1098900.v1.1 MD12G1119500.v1.1
prunus_persica	Prupe.2G214600_v2.0.a1 Prupe.6G237400_v2.0.a1 Prupe.6G237400_v2.0.a1
pyrus_communis	pycom01g13680 pycom04g09390 pycom12g11850
rosa_chinensis	RchiOBHm_Chr1g0363561
rosa_laevigata	RLG00000027557
rosa_multiflora	Rmu_sc0000548.1_g000001 Rmu_sc0004871.1_g000014 Rmu_ssc0000433.1_g000008
rosa_roxburghii	Rroxscaffold_4G00293080 Rroxscaffold_6G00411830
rosa_rugosa	Rorug01G0308100 Rorug03G0102000 Rorug03G0102100
rosa_samantha	Rh1BG280300 Rh1CG296400 Rh1DG311500 Rh3DG200700
rosa_wichuraiana	Rw1G028100 Rw3G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	556
AccII	CGCG	1 cut(s)	718
AccIII	TCCGGA	1 cut(s)	310
AciI	CCGC	4 cut(s)	192, 320, 488, 718
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	2 cut(s)	172, 216
AcuI	CTGAAG	2 cut(s)	74, 485
AfaI	GTAC	4 cut(s)	356, 369, 567, 779
AflIII	ACRYGT	1 cut(s)	351
AgeI	ACCGGT	1 cut(s)	326
AgsI	TTSAA	5 cut(s)	187, 203, 611, 658, 709
AjiI	CACGTC	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	679
AluBI	AGCT	3 cut(s)	142, 533, 738
AluI	AGCT	3 cut(s)	142, 533, 738
Alw26I	GTCTC	1 cut(s)	157
Aor13HI	TCCGGA	1 cut(s)	310
AoxI	GGCC	3 cut(s)	84, 205, 587
ApeKI	GCWGC	2 cut(s)	602, 676
ApoI	RAATTY	2 cut(s)	172, 216
AsiGI	ACCGGT	1 cut(s)	326
Asp700I	GAANNNNTTC	1 cut(s)	653
AspLEI	GCGC	1 cut(s)	718
AsuHPI	GGTGA	3 cut(s)	131, 190, 316
AxyI	CCTNAGG	1 cut(s)	584
BaeI	ACNNNNGTAYC	2 cut(s)	761, 794
BbvI	GCAGC	2 cut(s)	614, 688
BceAI	ACGGC	4 cut(s)	71, 192, 205, 526
BciT130I	CCWGG	1 cut(s)	681
BclI	TGATCA	2 cut(s)	634, 687
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	3 cut(s)	266, 416, 792
BisI	GCNGC	2 cut(s)	603, 677
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	2 cut(s)	604, 678
BmcAI	AGTACT	1 cut(s)	369
Bme1390I	CCNGG	1 cut(s)	681
BmgBI	CACGTC	1 cut(s)	352
BmrFI	CCNGG	1 cut(s)	681
Bpu1102I	GCTNAGC	1 cut(s)	138
Bsa29I	ATCGAT	1 cut(s)	624
BsaBI	GATNNNNATC	1 cut(s)	620
BsaWI	WCCGGW	2 cut(s)	310, 326
Bse118I	RCCGGY	1 cut(s)	326
Bse21I	CCTNAGG	1 cut(s)	584
Bse3DI	GCAATG	1 cut(s)	770
Bse8I	GATNNNNATC	1 cut(s)	620
BseAI	TCCGGA	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	681
BseCI	ATCGAT	1 cut(s)	624
BseJI	GATNNNNATC	1 cut(s)	620
BseMI	GCAATG	1 cut(s)	770
BseMII	CTCAG	2 cut(s)	129, 598
BseXI	GCAGC	2 cut(s)	614, 688
Bsh1236I	CGCG	1 cut(s)	718
Bsh1285I	CGRYCG	1 cut(s)	398
BshFI	GGCC	3 cut(s)	86, 207, 589
BshTI	ACCGGT	1 cut(s)	326
BshVI	ATCGAT	1 cut(s)	624
BsiEI	CGRYCG	1 cut(s)	398
BsiSI	CCGG	2 cut(s)	311, 327
BsmAI	GTCTC	1 cut(s)	157
BsnI	GGCC	3 cut(s)	86, 207, 589
Bsp13I	TCCGGA	1 cut(s)	310
Bsp1407I	TGTACA	2 cut(s)	354, 565
Bsp143I	GATC	7 cut(s)	395, 412, 621, 625, 634, 639, 687
Bsp1720I	GCTNAGC	1 cut(s)	138
BspACI	CCGC	4 cut(s)	192, 320, 488, 718
BspANI	GGCC	3 cut(s)	86, 207, 589
BspCNI	CTCAG	2 cut(s)	130, 597
BspDI	ATCGAT	1 cut(s)	624
BspEI	TCCGGA	1 cut(s)	310
BspFNI	CGCG	1 cut(s)	718
BsrDI	GCAATG	1 cut(s)	770
BsrFI	RCCGGY	1 cut(s)	326
BsrGI	TGTACA	2 cut(s)	354, 565
BssAI	RCCGGY	1 cut(s)	326
BssMI	GATC	7 cut(s)	395, 412, 621, 625, 634, 639, 687
Bst2UI	CCWGG	1 cut(s)	681
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	765
BstAUI	TGTACA	2 cut(s)	354, 565
BstC8I	GCNNGC	1 cut(s)	761
BstDEI	CTNAG	3 cut(s)	138, 478, 584
BstEII	GGTNACC	1 cut(s)	322
BstFNI	CGCG	1 cut(s)	718
BstHHI	GCGC	1 cut(s)	718
BstKTI	GATC	7 cut(s)	398, 415, 624, 628, 637, 642, 690
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	7 cut(s)	395, 412, 621, 625, 634, 639, 687
BstMCI	CGRYCG	1 cut(s)	398
BstMWI	GCNNNNNNNGC	3 cut(s)	204, 756, 765
BstNI	CCWGG	1 cut(s)	681
BstNSI	RCATGY	1 cut(s)	763
BstPI	GGTNACC	1 cut(s)	322
BstSCI	CCNGG	1 cut(s)	679
BstUI	CGCG	1 cut(s)	718
BstV1I	GCAGC	2 cut(s)	614, 688
Bsu15I	ATCGAT	1 cut(s)	624
Bsu36I	CCTNAGG	1 cut(s)	584
BsuRI	GGCC	3 cut(s)	86, 207, 589
BsuTUI	ATCGAT	1 cut(s)	624
BtrI	CACGTC	1 cut(s)	352
BtsIMutI	CAGTG	2 cut(s)	108, 394
Cac8I	GCNNGC	1 cut(s)	761
CfoI	GCGC	1 cut(s)	718
Cfr10I	RCCGGY	1 cut(s)	326
ClaI	ATCGAT	1 cut(s)	624
Csp6I	GTAC	4 cut(s)	355, 368, 566, 778
CspAI	ACCGGT	1 cut(s)	326
CviAII	CATG	6 cut(s)	133, 235, 450, 463, 506, 760
CviQI	GTAC	4 cut(s)	355, 368, 566, 778
DdeI	CTNAG	3 cut(s)	138, 478, 584
DpnI	GATC	7 cut(s)	397, 414, 623, 627, 636, 641, 689
DpnII	GATC	7 cut(s)	395, 412, 621, 625, 634, 639, 687
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco57I	CTGAAG	2 cut(s)	74, 485
Eco81I	CCTNAGG	1 cut(s)	584
Eco91I	GGTNACC	1 cut(s)	322
EcoO65I	GGTNACC	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	679
FaeI	CATG	6 cut(s)	136, 238, 453, 466, 509, 763
FatI	CATG	6 cut(s)	132, 234, 449, 462, 505, 759
FbaI	TGATCA	2 cut(s)	634, 687
FblI	GTMKAC	1 cut(s)	556
Fnu4HI	GCNGC	2 cut(s)	603, 677
Fsp4HI	GCNGC	2 cut(s)	603, 677
FspBI	CTAG	3 cut(s)	266, 416, 792
GlaI	GCGC	1 cut(s)	717
GluI	GCNGC	2 cut(s)	603, 677
HaeIII	GGCC	3 cut(s)	86, 207, 589
HapII	CCGG	2 cut(s)	311, 327
HhaI	GCGC	1 cut(s)	718
Hin1II	CATG	6 cut(s)	136, 238, 453, 466, 509, 763
Hin6I	GCGC	1 cut(s)	716
HinP1I	GCGC	1 cut(s)	716
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	4 cut(s)	49, 107, 474, 491
HpaII	CCGG	2 cut(s)	311, 327
HphI	GGTGA	3 cut(s)	131, 190, 316
Hpy166II	GTNNAC	7 cut(s)	226, 355, 392, 406, 557, 566, 778
Hpy188I	TCNGA	6 cut(s)	15, 54, 349, 523, 630, 639
Hpy188III	TCNNGA	5 cut(s)	111, 167, 284, 311, 416
Hpy8I	GTNNAC	7 cut(s)	226, 355, 392, 406, 557, 566, 778
Hpy99I	CGWCG	1 cut(s)	213
HpyAV	CCTTC	3 cut(s)	49, 197, 520
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4IV	ACGT	2 cut(s)	351, 663
HpyCH4V	TGCA	6 cut(s)	4, 198, 379, 460, 579, 763
HpyF10VI	GCNNNNNNNGC	3 cut(s)	204, 756, 765
HpyF3I	CTNAG	3 cut(s)	138, 478, 584
HpySE526I	ACGT	2 cut(s)	351, 663
Hsp92II	CATG	6 cut(s)	136, 238, 453, 466, 509, 763
HspAI	GCGC	1 cut(s)	716
Kpn2I	TCCGGA	1 cut(s)	310
Ksp22I	TGATCA	2 cut(s)	634, 687
Kzo9I	GATC	7 cut(s)	395, 412, 621, 625, 634, 639, 687
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	5 cut(s)	324, 340, 571, 666, 693
Lsp1109I	GCAGC	2 cut(s)	614, 688
MaeI	CTAG	3 cut(s)	266, 416, 792
MaeII	ACGT	2 cut(s)	351, 663
MaeIII	GTNAC	4 cut(s)	119, 164, 322, 359
MalI	GATC	7 cut(s)	397, 414, 623, 627, 636, 641, 689
MboI	GATC	7 cut(s)	395, 412, 621, 625, 634, 639, 687
MboII	GAAGA	3 cut(s)	72, 87, 736
MluCI	AATT	3 cut(s)	172, 216, 743
MlyI	GAGTC	3 cut(s)	43, 468, 485
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	6 cut(s)	260, 283, 285, 290, 593, 714
MroI	TCCGGA	1 cut(s)	310
MroXI	GAANNNNTTC	1 cut(s)	653
MseI	TTAA	4 cut(s)	65, 746, 786, 799
MslI	CAYNNNNRTG	1 cut(s)	611
MspI	CCGG	2 cut(s)	311, 327
MspR9I	CCNGG	1 cut(s)	681
MvaI	CCWGG	1 cut(s)	681
MvnI	CGCG	1 cut(s)	718
MwoI	GCNNNNNNNGC	3 cut(s)	204, 756, 765
NdeII	GATC	7 cut(s)	395, 412, 621, 625, 634, 639, 687
NlaIII	CATG	6 cut(s)	136, 238, 453, 466, 509, 763
NmuCI	GTSAC	3 cut(s)	119, 164, 322
NspI	RCATGY	1 cut(s)	763
PaeI	GCATGC	1 cut(s)	763
PdmI	GAANNNNTTC	1 cut(s)	653
PfeI	GAWTC	1 cut(s)	107
PinAI	ACCGGT	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	604, 678
Ple19I	CGATCG	1 cut(s)	398
PleI	GAGTC	3 cut(s)	43, 468, 485
PpsI	GAGTC	3 cut(s)	43, 468, 485
Psp6I	CCWGG	1 cut(s)	679
PspEI	GGTNACC	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	679
PvuI	CGATCG	1 cut(s)	398
RsaI	GTAC	4 cut(s)	356, 369, 567, 779
RsaNI	GTAC	4 cut(s)	355, 368, 566, 778
RseI	CAYNNNNRTG	1 cut(s)	611
SaqAI	TTAA	4 cut(s)	65, 746, 786, 799
SatI	GCNGC	2 cut(s)	603, 677
Sau3AI	GATC	7 cut(s)	395, 412, 621, 625, 634, 639, 687
ScaI	AGTACT	1 cut(s)	369
SchI	GAGTC	3 cut(s)	43, 468, 485
ScrFI	CCNGG	1 cut(s)	681
SetI	ASST	9 cut(s)	121, 144, 301, 354, 535, 552, 585, 666, 740
SmiMI	CAYNNNNRTG	1 cut(s)	611
SphI	GCATGC	1 cut(s)	763
Sse9I	AATT	3 cut(s)	172, 216, 743
SsiI	CCGC	4 cut(s)	192, 320, 488, 718
SspMI	CTAG	3 cut(s)	266, 416, 792
StyD4I	CCNGG	1 cut(s)	679
TaaI	ACNGT	1 cut(s)	359
TaiI	ACGT	2 cut(s)	354, 666
TaqI	TCGA	3 cut(s)	411, 494, 624
TasI	AATT	3 cut(s)	172, 216, 743
TatI	WGTACW	3 cut(s)	354, 367, 565
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	4 cut(s)	65, 746, 786, 799
Tru9I	TTAA	4 cut(s)	65, 746, 786, 799
TscAI	CASTG	2 cut(s)	108, 394
TseFI	GTSAC	3 cut(s)	119, 164, 322
TseI	GCWGC	2 cut(s)	602, 676
Tsp45I	GTSAC	3 cut(s)	119, 164, 322
TspDTI	ATGAA	2 cut(s)	121, 744
TspGWI	ACGGA	3 cut(s)	87, 355, 378
TspRI	CASTG	2 cut(s)	108, 394
XapI	RAATTY	2 cut(s)	172, 216
XbaI	TCTAGA	1 cut(s)	415
XceI	RCATGY	1 cut(s)	763
XmiI	GTMKAC	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	653
XspI	CTAG	3 cut(s)	266, 416, 792
ZrmI	AGTACT	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.