Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0009110

Physical Location & Seq

Genomic Coordinates Forward (+)

45243724 .. 45251770

Gene Structure 8047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G029370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTGTCCTGATGTAGTTTACACTGTACCTCCTGTTGTGGTGCGAAATGATGATTTGACATGGAAAGATGTTTGCCATTACTTGTATGAAGAAAATGCATTTGATAACATTGTTATATCACCTGGACCTGGTTCTCCTACATGCCCAGCAGACATAGGAATATGTCTTCAGGTGCTGCTTGACTGCTGGAATGTCCCCATCTTGGGTGTTTGCCTTGGACATCAGGCTTTAGGTTATGTGCATGGTGCTAAAGTTGTCCACGCATCTGAACCAGTCCATGGACGCTTGAGTGAAATAGAGCACAATGGGTGCATACTTTTCAATGACATTCCTTCTGGCCACAACTCTGGATTCAAGGTGGTTCGGTACCATTCACTGGTCATAGATGCTGAATCACTCCCAGATGAACTCATTCCTATAGCATGGACCTCTTCTGTGAATGCACTTTCTTTTATTGAGACCAAAGAATCTGATGTTGCCTCTAAATTTGCTGATGGGTCTTTTTCAAGGAAACCAAAAAATGGAAGTTATTCACCTTCCAGCCATTCTGACAAAGTACAGAGTGAAAGGGTTCTCATGGGCATTATGCATTCTTCCAGGCCCCATTATGGTGTACAGTTCCATCCAGAGAGTGTTGCTACCTGCCATGGAAGGCAAATATTCAAGAATTTTAGAAAAATCACAGAGGATTATTGGCTGAGATCAAGGGCATCATTCATCAACGCGCGAAATTTTCCTTTTAATGAAGCTTCAAAACTCAACACCGTTTCTTCGACCCGAAATCCGGCAAAAACGACCCGGCGGTATCTCCACCTTCCGGTCGATTGGCGGAATCGAACAAGCAGTATTCTCTTCACCTCGACGGCGCGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006766 GO:0006767 GO:0006807 GO:0008150 GO:0008152 GO:0008153 GO:0008483 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009108 GO:0009110 GO:0009396 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0017144 GO:0018130 GO:0019438 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0042398 GO:0042537 GO:0042558 GO:0042559 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0046482 GO:0046483 GO:0046653 GO:0046654 GO:0046655 GO:0046656 GO:0046820 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Anth_synt_I_N Chorismate_bind GATase

Protein Analysis

291

Amino Acids

32.48

Weight (kDa)

7.68

Isoelectric Point (pI)

55.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	13 - 149	1.5e-24	Glutamine amidotransferase class-I
GATase	PF00117	189 - 224	1.1e-08	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28880
fragaria_vesca	FvH4_7g19690
malus_domestica	MD01G1109300.v1.1 MD07G1175300.v1.1
prunus_persica	Prupe.2G214500_v2.0.a1
pyrus_communis	pycom01g13660 pycom07g16970
rosa_chinensis	RchiOBHm_Chr1g0363521
rosa_laevigata	RLG00000027559
rosa_multiflora	Rmu_ssc0000433.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293090
rosa_rugosa	Rorug01G0308100
rosa_samantha	Rh1AG316800 Rh1BG280200 Rh1CG296300 Rh1DG311400 Rh5DG228600
rosa_wichuraiana	Rw0G000800 Rw1G028080 Rw2G022180 Rw3G029370 Rw5G038670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	650
Acc65I	GGTACC	1 cut(s)	366
AccB1I	GGYRCC	1 cut(s)	366
AccB7I	CCANNNNNTGG	3 cut(s)	278, 376, 521
AccII	CGCG	3 cut(s)	725, 727, 868
AciI	CCGC	2 cut(s)	802, 829
AcoI	YGGCCR	1 cut(s)	337
AcsI	RAATTY	3 cut(s)	485, 667, 730
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	4 cut(s)	27, 368, 558, 615
AfiI	CCNNNNNNNGG	9 cut(s)	128, 202, 203, 278, 376, 521, 608, 784, 817
AgsI	TTSAA	5 cut(s)	322, 355, 507, 664, 753
AjnI	CCWGG	3 cut(s)	121, 127, 596
AluBI	AGCT	2 cut(s)	749, 873
AluI	AGCT	2 cut(s)	749, 873
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	452
AlwNI	CAGNNNCTG	1 cut(s)	175
AoxI	GGCC	2 cut(s)	337, 599
ApeKI	GCWGC	1 cut(s)	175
ApoI	RAATTY	3 cut(s)	485, 667, 730
Asp700I	GAANNNNTTC	3 cut(s)	411, 529, 570
Asp718I	GGTACC	1 cut(s)	366
AspLEI	GCGC	2 cut(s)	727, 868
AspS9I	GGNCC	3 cut(s)	125, 426, 600
AsuC2I	CCSGG	1 cut(s)	799
AsuHPI	GGTGA	3 cut(s)	111, 525, 847
AvaII	GGWCC	2 cut(s)	125, 426
BalI	TGGCCA	1 cut(s)	339
BanI	GGYRCC	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	3 cut(s)	206, 488, 630
BciT130I	CCWGG	3 cut(s)	123, 129, 598
BcnI	CCSGG	1 cut(s)	799
BcoDI	GTCTC	1 cut(s)	452
BfmI	CTRYAG	1 cut(s)	417
BfuAI	ACCTGC	1 cut(s)	650
BisI	GCNGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	177
Bme1390I	CCNGG	4 cut(s)	123, 129, 598, 799
Bme18I	GGWCC	2 cut(s)	125, 426
BmgT120I	GGNCC	3 cut(s)	125, 426, 600
BmiI	GGNNCC	2 cut(s)	368, 602
BmrFI	CCNGG	4 cut(s)	123, 129, 598, 799
BmsI	GCATC	3 cut(s)	272, 376, 719
BpiI	GAAGAC	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	307
BpuMI	CCSGG	1 cut(s)	799
BsaI	GGTCTC	1 cut(s)	452
BsaJI	CCNNGG	3 cut(s)	214, 277, 646
BsaWI	WCCGGW	1 cut(s)	817
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	9 cut(s)	128, 202, 203, 278, 376, 521, 608, 784, 817
Bse1I	ACTGG	2 cut(s)	272, 381
BseBI	CCWGG	3 cut(s)	123, 129, 598
BseDI	CCNNGG	3 cut(s)	214, 277, 646
BseGI	GGATG	1 cut(s)	622
BseLI	CCNNNNNNNGG	9 cut(s)	128, 202, 203, 278, 376, 521, 608, 784, 817
BseMII	CTCAG	1 cut(s)	689
BseNI	ACTGG	2 cut(s)	272, 381
BseXI	GCAGC	1 cut(s)	162
BseYI	CCCAGC	1 cut(s)	145
Bsh1236I	CGCG	3 cut(s)	725, 727, 868
Bsh1285I	CGRYCG	1 cut(s)	822
BshFI	GGCC	2 cut(s)	339, 601
BshNI	GGYRCC	1 cut(s)	366
BsiEI	CGRYCG	1 cut(s)	822
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	3 cut(s)	785, 799, 818
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	9 cut(s)	128, 202, 203, 278, 376, 521, 608, 784, 817
BsmAI	GTCTC	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	2 cut(s)	445, 589
BsnI	GGCC	2 cut(s)	339, 601
Bso31I	GGTCTC	1 cut(s)	452
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp1407I	TGTACA	1 cut(s)	613
Bsp143I	GATC	1 cut(s)	701
Bsp19I	CCATGG	2 cut(s)	277, 646
BspACI	CCGC	2 cut(s)	802, 829
BspANI	GGCC	2 cut(s)	339, 601
BspCNI	CTCAG	1 cut(s)	690
BspFNI	CGCG	3 cut(s)	725, 727, 868
BspLI	GGNNCC	2 cut(s)	368, 602
BspMI	ACCTGC	1 cut(s)	650
BspT107I	GGYRCC	1 cut(s)	366
BspTNI	GGTCTC	1 cut(s)	452
BsrGI	TGTACA	1 cut(s)	613
BsrI	ACTGG	2 cut(s)	272, 381
BssECI	CCNNGG	3 cut(s)	214, 277, 646
BssMI	GATC	1 cut(s)	701
BssT1I	CCWWGG	3 cut(s)	214, 277, 646
Bst2UI	CCWGG	3 cut(s)	123, 129, 598
Bst4CI	ACNGT	3 cut(s)	25, 618, 766
Bst6I	CTCTTC	2 cut(s)	436, 857
BstAUI	TGTACA	1 cut(s)	613
BstDEI	CTNAG	1 cut(s)	698
BstDSI	CCRYGG	2 cut(s)	277, 646
BstF5I	GGATG	1 cut(s)	622
BstFNI	CGCG	3 cut(s)	725, 727, 868
BstHHI	GCGC	2 cut(s)	727, 868
BstKTI	GATC	1 cut(s)	704
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	1 cut(s)	701
BstMCI	CGRYCG	1 cut(s)	822
BstNI	CCWGG	3 cut(s)	123, 129, 598
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	4 cut(s)	121, 127, 596, 797
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	3 cut(s)	725, 727, 868
BstV1I	GCAGC	1 cut(s)	162
BstV2I	GAAGAC	1 cut(s)	158
BstXI	CCANNNNNNTGG	1 cut(s)	347
BsuRI	GGCC	2 cut(s)	339, 601
BtgI	CCRYGG	2 cut(s)	277, 646
BtsCI	GGATG	1 cut(s)	622
BtsIMutI	CAGTG	2 cut(s)	21, 374
BveI	ACCTGC	1 cut(s)	650
CaiI	CAGNNNCTG	1 cut(s)	175
CfoI	GCGC	2 cut(s)	727, 868
Cfr13I	GGNCC	3 cut(s)	125, 426, 600
CseI	GACGC	1 cut(s)	291
CsiI	ACCWGGT	1 cut(s)	127
Csp6I	GTAC	4 cut(s)	26, 367, 557, 614
CviAII	CATG	7 cut(s)	60, 141, 242, 278, 423, 577, 647
CviJI	RGCY	7 cut(s)	227, 339, 543, 601, 697, 749, 873
CviKI_1	RGCY	7 cut(s)	227, 339, 543, 601, 697, 749, 873
CviQI	GTAC	4 cut(s)	26, 367, 557, 614
DdeI	CTNAG	1 cut(s)	698
DpnI	GATC	1 cut(s)	703
DpnII	GATC	1 cut(s)	701
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	2 cut(s)	436, 857
EarI	CTCTTC	2 cut(s)	436, 857
EciI	GGCGGA	1 cut(s)	844
Eco130I	CCWWGG	3 cut(s)	214, 277, 646
Eco31I	GGTCTC	1 cut(s)	452
Eco47I	GGWCC	2 cut(s)	125, 426
Eco57I	CTGAAG	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	600
EcoRII	CCWGG	3 cut(s)	121, 127, 596
EcoT14I	CCWWGG	3 cut(s)	214, 277, 646
EcoT22I	ATGCAT	2 cut(s)	100, 591
ErhI	CCWWGG	3 cut(s)	214, 277, 646
FaeI	CATG	7 cut(s)	63, 144, 245, 281, 426, 580, 650
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	7 cut(s)	59, 140, 241, 277, 422, 576, 646
Fnu4HI	GCNGC	1 cut(s)	176
FokI	GGATG	1 cut(s)	609
Fsp4HI	GCNGC	1 cut(s)	176
GlaI	GCGC	2 cut(s)	726, 867
GluI	GCNGC	1 cut(s)	176
GsaI	CCCAGC	1 cut(s)	149
HaeIII	GGCC	2 cut(s)	339, 601
HapII	CCGG	3 cut(s)	785, 799, 818
HgaI	GACGC	1 cut(s)	291
HhaI	GCGC	2 cut(s)	727, 868
Hin1II	CATG	7 cut(s)	63, 144, 245, 281, 426, 580, 650
Hin6I	GCGC	2 cut(s)	725, 866
HinP1I	GCGC	2 cut(s)	725, 866
HindIII	AAGCTT	1 cut(s)	747
HinfI	GANTC	4 cut(s)	351, 392, 467, 832
HpaII	CCGG	3 cut(s)	785, 799, 818
HphI	GGTGA	3 cut(s)	111, 525, 847
Hpy166II	GTNNAC	3 cut(s)	19, 259, 614
Hpy188I	TCNGA	3 cut(s)	268, 472, 550
Hpy188III	TCNNGA	4 cut(s)	8, 348, 626, 664
Hpy8I	GTNNAC	3 cut(s)	19, 259, 614
Hpy99I	CGWCG	1 cut(s)	865
HpyAV	CCTTC	4 cut(s)	342, 546, 645, 824
HpyCH4III	ACNGT	3 cut(s)	25, 618, 766
HpyCH4V	TGCA	5 cut(s)	98, 241, 312, 443, 589
HpyF3I	CTNAG	1 cut(s)	698
Hsp92II	CATG	7 cut(s)	63, 144, 245, 281, 426, 580, 650
HspAI	GCGC	2 cut(s)	725, 866
KpnI	GGTACC	1 cut(s)	370
Kzo9I	GATC	1 cut(s)	701
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	3 cut(s)	272, 376, 719
MabI	ACCWGGT	1 cut(s)	127
MalI	GATC	1 cut(s)	703
MboI	GATC	1 cut(s)	701
MboII	GAAGA	6 cut(s)	101, 158, 423, 585, 762, 844
MhlI	GDGCHC	1 cut(s)	303
MlsI	TGGCCA	1 cut(s)	339
MluCI	AATT	3 cut(s)	485, 667, 730
MluNI	TGGCCA	1 cut(s)	339
MnlI	CCTC	5 cut(s)	39, 439, 490, 679, 868
Mox20I	TGGCCA	1 cut(s)	339
Mph1103I	ATGCAT	2 cut(s)	100, 591
MroXI	GAANNNNTTC	3 cut(s)	411, 529, 570
MscI	TGGCCA	1 cut(s)	339
MseI	TTAA	1 cut(s)	741
MslI	CAYNNNNRTG	1 cut(s)	609
Msp20I	TGGCCA	1 cut(s)	339
MspI	CCGG	3 cut(s)	785, 799, 818
MspR9I	CCNGG	4 cut(s)	123, 129, 598, 799
Mva1269I	GAATGC	2 cut(s)	445, 589
MvaI	CCWGG	3 cut(s)	123, 129, 598
MvnI	CGCG	3 cut(s)	725, 727, 868
NciI	CCSGG	1 cut(s)	799
NcoI	CCATGG	2 cut(s)	277, 646
NdeII	GATC	1 cut(s)	701
NlaIII	CATG	7 cut(s)	63, 144, 245, 281, 426, 580, 650
NlaIV	GGNNCC	2 cut(s)	368, 602
NsiI	ATGCAT	2 cut(s)	100, 591
NspI	RCATGY	1 cut(s)	144
PctI	GAATGC	2 cut(s)	445, 589
PdmI	GAANNNNTTC	3 cut(s)	411, 529, 570
PfeI	GAWTC	4 cut(s)	351, 392, 467, 832
PflMI	CCANNNNNTGG	3 cut(s)	278, 376, 521
PkrI	GCNGC	1 cut(s)	177
Psp6I	CCWGG	3 cut(s)	121, 127, 596
PspFI	CCCAGC	1 cut(s)	145
PspGI	CCWGG	3 cut(s)	121, 127, 596
PspN4I	GGNNCC	2 cut(s)	368, 602
PspPI	GGNCC	3 cut(s)	125, 426, 600
PstNI	CAGNNNCTG	1 cut(s)	175
RsaI	GTAC	4 cut(s)	27, 368, 558, 615
RsaNI	GTAC	4 cut(s)	26, 367, 557, 614
RseI	CAYNNNNRTG	1 cut(s)	609
SaqAI	TTAA	1 cut(s)	741
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	1 cut(s)	701
Sau96I	GGNCC	3 cut(s)	125, 426, 600
ScrFI	CCNGG	4 cut(s)	123, 129, 598, 799
SduI	GDGCHC	1 cut(s)	303
SexAI	ACCWGGT	1 cut(s)	127
SfaNI	GCATC	3 cut(s)	272, 376, 719
SfcI	CTRYAG	1 cut(s)	417
SinI	GGWCC	2 cut(s)	125, 426
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	3 cut(s)	485, 667, 730
SsiI	CCGC	2 cut(s)	802, 829
SspI	AATATT	1 cut(s)	660
StyD4I	CCNGG	4 cut(s)	121, 127, 596, 797
StyI	CCWWGG	3 cut(s)	214, 277, 646
TaaI	ACNGT	3 cut(s)	25, 618, 766
TaqI	TCGA	4 cut(s)	773, 822, 835, 860
TasI	AATT	3 cut(s)	485, 667, 730
TatI	WGTACW	2 cut(s)	556, 613
TfiI	GAWTC	4 cut(s)	351, 392, 467, 832
Tru1I	TTAA	1 cut(s)	741
Tru9I	TTAA	1 cut(s)	741
TscAI	CASTG	2 cut(s)	28, 381
TseI	GCWGC	1 cut(s)	175
TspDTI	ATGAA	4 cut(s)	102, 420, 706, 759
TspRI	CASTG	2 cut(s)	28, 381
Van91I	CCANNNNNTGG	3 cut(s)	278, 376, 521
VpaK11BI	GGWCC	2 cut(s)	125, 426
XapI	RAATTY	3 cut(s)	485, 667, 730
XceI	RCATGY	1 cut(s)	144
XmnI	GAANNNNTTC	3 cut(s)	411, 529, 570
Zsp2I	ATGCAT	2 cut(s)	100, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.