Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0009110

Physical Location & Seq

Genomic Coordinates Reverse (-)

68270559 .. 68273588

Gene Structure 3030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G038670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTGTCCTGATGTAGTTTACACTGTACCTCCTGTTGTGGTGCGAAATGATGATTTGACATGGAAAGATGTTTGCCATTACTTGTATGAAGAAAATGCATTTGATAACATTGTTATATCACCTGGACCTGGTTCTCCTACATGCCCAGCAGACATAGGTTATGTGCATGGTGCTAAAGTTGTCCACGCATCTGAACCAGTCCATGGACGCTTGAGTGAAATAGAGCACAATGGGTGCATACTTTTCAATGACATTCCTTCTGGCCACAACTCTGGATTCAAGGTGGTTCGGTACCATTCACTGGTCATAGATGCTGAATCACTCCCAGATGAACTCATTCCTATAGCATGGACCTCTTCTGTGAATGCACTTTCTTTTATTGAGACCAAAGAATCTGATGTTGCCTCTAAATTTGCTGATGGGTCTTTTTCAAGGAAACCAAAAAATGGAAGTTATTCACCTTCCAGCCATTCTGACAAAGTACAGAGTGAAAGGGTTCTCATGGGCATTATGCATTCTTCCAGGCCCCATTATGGTGTACAGTTCCATCCAGAGAGTGTTGCTACCTGCCATGGAAGGCAAATATTCAAGAATTTTAGAAAAATCACAGAGGATTATTGGCTGAGATCAAGGGCATCATTCATCAACGCGCGAAATTTTCCTTTTAATGGTAAACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006766 GO:0006767 GO:0006807 GO:0008150 GO:0008152 GO:0008153 GO:0008483 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009108 GO:0009110 GO:0009396 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0017144 GO:0018130 GO:0019438 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0042398 GO:0042537 GO:0042558 GO:0042559 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0046482 GO:0046483 GO:0046653 GO:0046654 GO:0046655 GO:0046656 GO:0046820 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Anth_synt_I_N Chorismate_bind GATase

Protein Analysis

226

Amino Acids

25.22

Weight (kDa)

6.44

Isoelectric Point (pI)

52.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	53 - 124	3.1e-06	Glutamine amidotransferase class-I
GATase	PF00117	164 - 199	7.5e-09	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28880
fragaria_vesca	FvH4_7g19690
malus_domestica	MD01G1109300.v1.1 MD07G1175300.v1.1
prunus_persica	Prupe.2G214500_v2.0.a1
pyrus_communis	pycom01g13660 pycom07g16970
rosa_chinensis	RchiOBHm_Chr1g0363521
rosa_laevigata	RLG00000027559
rosa_multiflora	Rmu_ssc0000433.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293090
rosa_rugosa	Rorug01G0308100
rosa_samantha	Rh1AG316800 Rh1BG280200 Rh1CG296300 Rh1DG311400 Rh5DG228600
rosa_wichuraiana	Rw0G000800 Rw1G028080 Rw2G022180 Rw3G029370 Rw5G038670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	575
Acc65I	GGTACC	1 cut(s)	291
AccB1I	GGYRCC	1 cut(s)	291
AccB7I	CCANNNNNTGG	3 cut(s)	203, 301, 446
AccII	CGCG	2 cut(s)	650, 652
AcoI	YGGCCR	1 cut(s)	262
AcsI	RAATTY	3 cut(s)	410, 592, 655
AfaI	GTAC	4 cut(s)	27, 293, 483, 540
AfiI	CCNNNNNNNGG	6 cut(s)	128, 203, 301, 446, 533, 668
AgsI	TTSAA	4 cut(s)	247, 280, 432, 589
AjnI	CCWGG	3 cut(s)	121, 127, 521
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	377
AoxI	GGCC	2 cut(s)	262, 524
ApoI	RAATTY	3 cut(s)	410, 592, 655
Asp700I	GAANNNNTTC	3 cut(s)	336, 454, 495
Asp718I	GGTACC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	652
AspS9I	GGNCC	3 cut(s)	125, 351, 525
AsuHPI	GGTGA	2 cut(s)	111, 450
AvaII	GGWCC	2 cut(s)	125, 351
BalI	TGGCCA	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	228
BccI	CCATC	2 cut(s)	413, 555
BciT130I	CCWGG	3 cut(s)	123, 129, 523
BcoDI	GTCTC	1 cut(s)	377
BfmI	CTRYAG	2 cut(s)	342, 677
BfuAI	ACCTGC	1 cut(s)	575
Bme1390I	CCNGG	3 cut(s)	123, 129, 523
Bme18I	GGWCC	2 cut(s)	125, 351
BmgT120I	GGNCC	3 cut(s)	125, 351, 525
BmiI	GGNNCC	2 cut(s)	293, 527
BmrFI	CCNGG	3 cut(s)	123, 129, 523
BmsI	GCATC	3 cut(s)	197, 301, 644
BpuEI	CTTGAG	1 cut(s)	232
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	2 cut(s)	202, 571
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	6 cut(s)	128, 203, 301, 446, 533, 668
Bse1I	ACTGG	2 cut(s)	197, 306
BseBI	CCWGG	3 cut(s)	123, 129, 523
BseDI	CCNNGG	2 cut(s)	202, 571
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	6 cut(s)	128, 203, 301, 446, 533, 668
BseMII	CTCAG	1 cut(s)	614
BseNI	ACTGG	2 cut(s)	197, 306
BseYI	CCCAGC	1 cut(s)	145
Bsh1236I	CGCG	2 cut(s)	650, 652
BshFI	GGCC	2 cut(s)	264, 526
BshNI	GGYRCC	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	228
BslI	CCNNNNNNNGG	6 cut(s)	128, 203, 301, 446, 533, 668
BsmAI	GTCTC	1 cut(s)	377
BsmI	GAATGC	2 cut(s)	370, 514
BsnI	GGCC	2 cut(s)	264, 526
Bso31I	GGTCTC	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp1407I	TGTACA	1 cut(s)	538
Bsp143I	GATC	1 cut(s)	626
Bsp19I	CCATGG	2 cut(s)	202, 571
BspANI	GGCC	2 cut(s)	264, 526
BspCNI	CTCAG	1 cut(s)	615
BspFNI	CGCG	2 cut(s)	650, 652
BspLI	GGNNCC	2 cut(s)	293, 527
BspMI	ACCTGC	1 cut(s)	575
BspT107I	GGYRCC	1 cut(s)	291
BspTNI	GGTCTC	1 cut(s)	377
BsrGI	TGTACA	1 cut(s)	538
BsrI	ACTGG	2 cut(s)	197, 306
BssECI	CCNNGG	2 cut(s)	202, 571
BssMI	GATC	1 cut(s)	626
BssT1I	CCWWGG	2 cut(s)	202, 571
Bst2UI	CCWGG	3 cut(s)	123, 129, 523
Bst4CI	ACNGT	2 cut(s)	25, 543
Bst6I	CTCTTC	1 cut(s)	361
BstAUI	TGTACA	1 cut(s)	538
BstDEI	CTNAG	1 cut(s)	623
BstDSI	CCRYGG	2 cut(s)	202, 571
BstF5I	GGATG	1 cut(s)	547
BstFNI	CGCG	2 cut(s)	650, 652
BstHHI	GCGC	1 cut(s)	652
BstKTI	GATC	1 cut(s)	629
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	1 cut(s)	626
BstNI	CCWGG	3 cut(s)	123, 129, 523
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	3 cut(s)	121, 127, 521
BstSFI	CTRYAG	2 cut(s)	342, 677
BstUI	CGCG	2 cut(s)	650, 652
BstXI	CCANNNNNNTGG	1 cut(s)	272
BsuRI	GGCC	2 cut(s)	264, 526
BtgI	CCRYGG	2 cut(s)	202, 571
BtsCI	GGATG	1 cut(s)	547
BtsIMutI	CAGTG	2 cut(s)	21, 299
BveI	ACCTGC	1 cut(s)	575
CfoI	GCGC	1 cut(s)	652
Cfr13I	GGNCC	3 cut(s)	125, 351, 525
CseI	GACGC	1 cut(s)	216
CsiI	ACCWGGT	1 cut(s)	127
Csp6I	GTAC	4 cut(s)	26, 292, 482, 539
CviAII	CATG	7 cut(s)	60, 141, 167, 203, 348, 502, 572
CviJI	RGCY	4 cut(s)	264, 468, 526, 622
CviKI_1	RGCY	4 cut(s)	264, 468, 526, 622
CviQI	GTAC	4 cut(s)	26, 292, 482, 539
DdeI	CTNAG	1 cut(s)	623
DpnI	GATC	1 cut(s)	628
DpnII	GATC	1 cut(s)	626
EaeI	YGGCCR	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	361
EarI	CTCTTC	1 cut(s)	361
Eco130I	CCWWGG	2 cut(s)	202, 571
Eco31I	GGTCTC	1 cut(s)	377
Eco47I	GGWCC	2 cut(s)	125, 351
EcoO109I	RGGNCCY	1 cut(s)	525
EcoRII	CCWGG	3 cut(s)	121, 127, 521
EcoT14I	CCWWGG	2 cut(s)	202, 571
EcoT22I	ATGCAT	2 cut(s)	100, 516
ErhI	CCWWGG	2 cut(s)	202, 571
FaeI	CATG	7 cut(s)	63, 144, 170, 206, 351, 505, 575
FatI	CATG	7 cut(s)	59, 140, 166, 202, 347, 501, 571
FokI	GGATG	1 cut(s)	534
GlaI	GCGC	1 cut(s)	651
GsaI	CCCAGC	1 cut(s)	149
HaeIII	GGCC	2 cut(s)	264, 526
HgaI	GACGC	1 cut(s)	216
HhaI	GCGC	1 cut(s)	652
Hin1II	CATG	7 cut(s)	63, 144, 170, 206, 351, 505, 575
Hin6I	GCGC	1 cut(s)	650
HinP1I	GCGC	1 cut(s)	650
HinfI	GANTC	3 cut(s)	276, 317, 392
HphI	GGTGA	2 cut(s)	111, 450
Hpy166II	GTNNAC	4 cut(s)	19, 184, 539, 674
Hpy188I	TCNGA	3 cut(s)	193, 397, 475
Hpy188III	TCNNGA	4 cut(s)	8, 273, 551, 589
Hpy8I	GTNNAC	4 cut(s)	19, 184, 539, 674
HpyAV	CCTTC	3 cut(s)	267, 471, 570
HpyCH4III	ACNGT	2 cut(s)	25, 543
HpyCH4V	TGCA	5 cut(s)	98, 166, 237, 368, 514
HpyF3I	CTNAG	1 cut(s)	623
Hsp92II	CATG	7 cut(s)	63, 144, 170, 206, 351, 505, 575
HspAI	GCGC	1 cut(s)	650
KpnI	GGTACC	1 cut(s)	295
Kzo9I	GATC	1 cut(s)	626
LweI	GCATC	3 cut(s)	197, 301, 644
MabI	ACCWGGT	1 cut(s)	127
MalI	GATC	1 cut(s)	628
MboI	GATC	1 cut(s)	626
MboII	GAAGA	3 cut(s)	101, 348, 510
MhlI	GDGCHC	1 cut(s)	228
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	3 cut(s)	410, 592, 655
MluNI	TGGCCA	1 cut(s)	264
MnlI	CCTC	4 cut(s)	39, 364, 415, 604
Mox20I	TGGCCA	1 cut(s)	264
Mph1103I	ATGCAT	2 cut(s)	100, 516
MroXI	GAANNNNTTC	3 cut(s)	336, 454, 495
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	1 cut(s)	666
MslI	CAYNNNNRTG	1 cut(s)	534
Msp20I	TGGCCA	1 cut(s)	264
MspR9I	CCNGG	3 cut(s)	123, 129, 523
Mva1269I	GAATGC	2 cut(s)	370, 514
MvaI	CCWGG	3 cut(s)	123, 129, 523
MvnI	CGCG	2 cut(s)	650, 652
NcoI	CCATGG	2 cut(s)	202, 571
NdeII	GATC	1 cut(s)	626
NlaIII	CATG	7 cut(s)	63, 144, 170, 206, 351, 505, 575
NlaIV	GGNNCC	2 cut(s)	293, 527
NsiI	ATGCAT	2 cut(s)	100, 516
NspI	RCATGY	1 cut(s)	144
PctI	GAATGC	2 cut(s)	370, 514
PdmI	GAANNNNTTC	3 cut(s)	336, 454, 495
PfeI	GAWTC	3 cut(s)	276, 317, 392
PflMI	CCANNNNNTGG	3 cut(s)	203, 301, 446
Psp6I	CCWGG	3 cut(s)	121, 127, 521
PspFI	CCCAGC	1 cut(s)	145
PspGI	CCWGG	3 cut(s)	121, 127, 521
PspN4I	GGNNCC	2 cut(s)	293, 527
PspPI	GGNCC	3 cut(s)	125, 351, 525
RsaI	GTAC	4 cut(s)	27, 293, 483, 540
RsaNI	GTAC	4 cut(s)	26, 292, 482, 539
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	666
Sau3AI	GATC	1 cut(s)	626
Sau96I	GGNCC	3 cut(s)	125, 351, 525
ScrFI	CCNGG	3 cut(s)	123, 129, 523
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	8 cut(s)	31, 124, 130, 160, 285, 356, 463, 569
SexAI	ACCWGGT	1 cut(s)	127
SfaNI	GCATC	3 cut(s)	197, 301, 644
SfcI	CTRYAG	2 cut(s)	342, 677
SinI	GGWCC	2 cut(s)	125, 351
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	3 cut(s)	410, 592, 655
SspI	AATATT	1 cut(s)	585
StyD4I	CCNGG	3 cut(s)	121, 127, 521
StyI	CCWWGG	2 cut(s)	202, 571
TaaI	ACNGT	2 cut(s)	25, 543
TasI	AATT	3 cut(s)	410, 592, 655
TatI	WGTACW	2 cut(s)	481, 538
TfiI	GAWTC	3 cut(s)	276, 317, 392
Tru1I	TTAA	1 cut(s)	666
Tru9I	TTAA	1 cut(s)	666
TscAI	CASTG	2 cut(s)	28, 306
TspDTI	ATGAA	3 cut(s)	102, 345, 631
TspRI	CASTG	2 cut(s)	28, 306
Van91I	CCANNNNNTGG	3 cut(s)	203, 301, 446
VpaK11BI	GGWCC	2 cut(s)	125, 351
XapI	RAATTY	3 cut(s)	410, 592, 655
XceI	RCATGY	1 cut(s)	144
XmnI	GAANNNNTTC	3 cut(s)	336, 454, 495
Zsp2I	ATGCAT	2 cut(s)	100, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.