Belongs to the class-I aminoacyl-tRNA synthetase family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G49030 AT5G49030 AT5G49030 |
| fragaria_vesca | FvH4_4g18060 FvH4_4g18060 FvH4_4g18060 FvH4_4g18060 FvH4_4g18060 FvH4_4g18060 |
| malus_domestica | MD13G1168400.v1.1 MD16G1168800.v1.1 |
| prunus_persica | Prupe.1G136500_v2.0.a1 Prupe.1G136500_v2.0.a1 |
| pyrus_communis | pycom13g14400 pycom16g14210 |
| rosa_chinensis | RchiOBHm_Chr4g0422271 |
| rosa_laevigata | RLG00000007623 |
| rosa_multiflora | Rmu_sc0013245.1_g000018 |
| rosa_roxburghii | Rroxscaffold_5G00364380 |
| rosa_rugosa | Rorug04G0179100 |
| rosa_samantha | Rh4AG238300 Rh4BG241400 Rh4CG253300 Rh4DG237000 |
| rosa_wichuraiana | Rw4G020620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 531 |
| Acc36I | ACCTGC | 1 cut(s) | 1263 |
| AccB1I | GGYRCC | 1 cut(s) | 3265 |
| AccBSI | CCGCTC | 1 cut(s) | 1734 |
| AccI | GTMKAC | 2 cut(s) | 2196, 2922 |
| AccII | CGCG | 2 cut(s) | 1043, 1753 |
| AccIII | TCCGGA | 2 cut(s) | 898, 3187 |
| AclI | AACGTT | 1 cut(s) | 2190 |
| AclWI | GGATC | 5 cut(s) | 645, 758, 1905, 2061, 3232 |
| AcoI | YGGCCR | 4 cut(s) | 51, 487, 999, 2774 |
| AcsI | RAATTY | 8 cut(s) | 4, 164, 349, 1469, 2461, 2554, 2753, 2835 |
| AcuI | CTGAAG | 5 cut(s) | 294, 359, 945, 1170, 1244 |
| AfaI | GTAC | 7 cut(s) | 1086, 1197, 1488, 1883, 2039, 2726, 2884 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 880, 962, 1376, 1804, 2935, 3028, 3077, 3176, 3388 |
| AflII | CTTAAG | 1 cut(s) | 1403 |
| AjiI | CACGTC | 1 cut(s) | 1764 |
| AjnI | CCWGG | 4 cut(s) | 1019, 1369, 3021, 3381 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2852, 2884, 3371, 3403 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1952, 1984, 2238, 2270 |
| Alw21I | GWGCWC | 3 cut(s) | 116, 952, 2311 |
| Alw26I | GTCTC | 6 cut(s) | 243, 1099, 1820, 2027, 2267, 3129 |
| Alw44I | GTGCAC | 1 cut(s) | 948 |
| AlwI | GGATC | 5 cut(s) | 645, 758, 1905, 2061, 3232 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 122, 884, 1370, 3213 |
| Ama87I | CYCGRG | 1 cut(s) | 240 |
| Aor13HI | TCCGGA | 2 cut(s) | 898, 3187 |
| ApaLI | GTGCAC | 1 cut(s) | 948 |
| ApeKI | GCWGC | 9 cut(s) | 257, 286, 626, 668, 779, 1991, 2975, 3207, 3213 |
| ApoI | RAATTY | 8 cut(s) | 4, 164, 349, 1469, 2461, 2554, 2753, 2835 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 221, 253 |
| AseI | ATTAAT | 1 cut(s) | 522 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 151, 164, 1169, 1644 |
| AspS9I | GGNCC | 8 cut(s) | 245, 455, 808, 1219, 1357, 3136, 3190, 3339 |
| AsuHPI | GGTGA | 4 cut(s) | 485, 1784, 2869, 3159 |
| AsuII | TTCGAA | 1 cut(s) | 2783 |
| AvaI | CYCGRG | 1 cut(s) | 240 |
| AvaII | GGWCC | 5 cut(s) | 245, 455, 808, 1357, 3190 |
| AxyI | CCTNAGG | 1 cut(s) | 3171 |
| BaeGI | GKGCMC | 2 cut(s) | 952, 2600 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1553, 1586 |
| BalI | TGGCCA | 3 cut(s) | 53, 1001, 2776 |
| BanI | GGYRCC | 1 cut(s) | 3265 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1884, 1916 |
| BauI | CACGAG | 2 cut(s) | 360, 3126 |
| BbsI | GAAGAC | 1 cut(s) | 144 |
| Bbv12I | GWGCWC | 3 cut(s) | 116, 952, 2311 |
| BbvCI | CCTCAGC | 2 cut(s) | 2694, 3132 |
| BbvI | GCAGC | 9 cut(s) | 244, 298, 613, 680, 766, 1978, 2987, 3200, 3219 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 77, 111 |
| BciT130I | CCWGG | 4 cut(s) | 1021, 1371, 3023, 3383 |
| BciVI | GTATCC | 3 cut(s) | 906, 993, 1581 |
| BclI | TGATCA | 4 cut(s) | 619, 1542, 1834, 2434 |
| BcoDI | GTCTC | 6 cut(s) | 243, 1099, 1820, 2027, 2267, 3129 |
| BfaI | CTAG | 5 cut(s) | 204, 1728, 1908, 2613, 2904 |
| BfmI | CTRYAG | 6 cut(s) | 826, 1270, 1992, 2028, 2973, 3368 |
| BfrI | CTTAAG | 1 cut(s) | 1403 |
| BfuAI | ACCTGC | 1 cut(s) | 1263 |
| BfuI | GTATCC | 3 cut(s) | 906, 993, 1581 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 50 |
| BglII | AGATCT | 2 cut(s) | 1189, 1258 |
| Bme1390I | CCNGG | 4 cut(s) | 1021, 1371, 3023, 3383 |
| Bme18I | GGWCC | 5 cut(s) | 245, 455, 808, 1357, 3190 |
| BmeT110I | CYCGRG | 1 cut(s) | 240 |
| BmgBI | CACGTC | 1 cut(s) | 1764 |
| BmgT120I | GGNCC | 8 cut(s) | 245, 455, 808, 1219, 1357, 3136, 3190, 3339 |
| BmiI | GGNNCC | 8 cut(s) | 246, 1220, 1809, 2072, 2115, 3181, 3267, 3291 |
| BmrFI | CCNGG | 4 cut(s) | 1021, 1371, 3023, 3383 |
| BpiI | GAAGAC | 1 cut(s) | 144 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 937, 969, 2164, 2196 |
| BpmI | CTGGAG | 3 cut(s) | 871, 1413, 1781 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1695, 2694, 3132 |
| Bpu14I | TTCGAA | 1 cut(s) | 2783 |
| BpuEI | CTTGAG | 5 cut(s) | 1136, 1283, 2295, 2861, 2938 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2058 |
| BsaI | GGTCTC | 1 cut(s) | 243 |
| BsaJI | CCNNGG | 8 cut(s) | 15, 142, 1019, 1041, 2853, 2916, 3021, 3382 |
| BsaWI | WCCGGW | 2 cut(s) | 898, 3187 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1000, 1030, 2238, 2268, 2608, 2638, 3274, 3304 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 880, 962, 1376, 1804, 2935, 3028, 3077, 3176, 3388 |
| Bse21I | CCTNAGG | 1 cut(s) | 3171 |
| Bse3DI | GCAATG | 3 cut(s) | 1628, 1681, 1725 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2058 |
| BseAI | TCCGGA | 2 cut(s) | 898, 3187 |
| BseBI | CCWGG | 4 cut(s) | 1021, 1371, 3023, 3383 |
| BseDI | CCNNGG | 8 cut(s) | 15, 142, 1019, 1041, 2853, 2916, 3021, 3382 |
| BseJI | GATNNNNATC | 1 cut(s) | 2058 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 880, 962, 1376, 1804, 2935, 3028, 3077, 3176, 3388 |
| BseMI | GCAATG | 3 cut(s) | 1628, 1681, 1725 |
| BseRI | GAGGAG | 3 cut(s) | 1335, 1838, 3341 |
| BseSI | GKGCMC | 2 cut(s) | 952, 2600 |
| BseXI | GCAGC | 9 cut(s) | 244, 298, 613, 680, 766, 1978, 2987, 3200, 3219 |
| BsgI | GTGCAG | 2 cut(s) | 464, 3254 |
| Bsh1236I | CGCG | 2 cut(s) | 1043, 1753 |
| BshNI | GGYRCC | 1 cut(s) | 3265 |
| BsiHKAI | GWGCWC | 3 cut(s) | 116, 952, 2311 |
| BsiHKCI | CYCGRG | 1 cut(s) | 240 |
| BsiSI | CCGG | 3 cut(s) | 899, 1119, 3188 |
| BslFI | GGGAC | 2 cut(s) | 258, 3295 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 880, 962, 1376, 1804, 2935, 3028, 3077, 3176, 3388 |
| BsmAI | GTCTC | 6 cut(s) | 243, 1099, 1820, 2027, 2267, 3129 |
| BsmBI | CGTCTC | 1 cut(s) | 2267 |
| BsmFI | GGGAC | 2 cut(s) | 258, 3295 |
| BsmI | GAATGC | 1 cut(s) | 199 |
| Bso31I | GGTCTC | 1 cut(s) | 243 |
| BsoBI | CYCGRG | 1 cut(s) | 240 |
| Bsp119I | TTCGAA | 1 cut(s) | 2783 |
| Bsp1286I | GDGCHC | 4 cut(s) | 116, 952, 2311, 2600 |
| Bsp13I | TCCGGA | 2 cut(s) | 898, 3187 |
| BspEI | TCCGGA | 2 cut(s) | 898, 3187 |
| BspFNI | CGCG | 2 cut(s) | 1043, 1753 |
| BspHI | TCATGA | 1 cut(s) | 448 |
| BspLI | GGNNCC | 8 cut(s) | 246, 1220, 1809, 2072, 2115, 3181, 3267, 3291 |
| BspMAI | CTGCAG | 5 cut(s) | 1274, 1996, 2032, 2977, 3372 |
| BspMI | ACCTGC | 1 cut(s) | 1263 |
| BspPI | GGATC | 5 cut(s) | 645, 758, 1905, 2061, 3232 |
| BspQI | GCTCTTC | 1 cut(s) | 1987 |
| BspT104I | TTCGAA | 1 cut(s) | 2783 |
| BspT107I | GGYRCC | 1 cut(s) | 3265 |
| BspTI | CTTAAG | 1 cut(s) | 1403 |
| BspTNI | GGTCTC | 1 cut(s) | 243 |
| BsrBI | CCGCTC | 1 cut(s) | 1734 |
| BsrDI | GCAATG | 3 cut(s) | 1628, 1681, 1725 |
| BssECI | CCNNGG | 8 cut(s) | 15, 142, 1019, 1041, 2853, 2916, 3021, 3382 |
| BssSI | CACGAG | 2 cut(s) | 360, 3126 |
| BssT1I | CCWWGG | 2 cut(s) | 15, 2916 |
| Bst2BI | CACGAG | 2 cut(s) | 360, 3126 |
| Bst2UI | CCWGG | 4 cut(s) | 1021, 1371, 3023, 3383 |
| Bst4CI | ACNGT | 6 cut(s) | 313, 691, 1089, 2209, 2448, 2632 |
| Bst6I | CTCTTC | 1 cut(s) | 1987 |
| BstAFI | CTTAAG | 1 cut(s) | 1403 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 2484, 3204, 3213 |
| BstBI | TTCGAA | 1 cut(s) | 2783 |
| BstC8I | GCNNGC | 6 cut(s) | 1130, 1140, 2394, 2442, 2778, 3339 |
| BstDSI | CCRYGG | 1 cut(s) | 1041 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 878 |
| BstFNI | CGCG | 2 cut(s) | 1043, 1753 |
| BstMAI | GTCTC | 6 cut(s) | 243, 1099, 1820, 2027, 2267, 3129 |
| BstNI | CCWGG | 4 cut(s) | 1021, 1371, 3023, 3383 |
| BstNSI | RCATGY | 2 cut(s) | 2396, 2444 |
| BstSCI | CCNGG | 4 cut(s) | 1019, 1369, 3021, 3381 |
| BstSFI | CTRYAG | 6 cut(s) | 826, 1270, 1992, 2028, 2973, 3368 |
| BstSLI | GKGCMC | 2 cut(s) | 952, 2600 |
| BstUI | CGCG | 2 cut(s) | 1043, 1753 |
| BstV1I | GCAGC | 9 cut(s) | 244, 298, 613, 680, 766, 1978, 2987, 3200, 3219 |
| BstV2I | GAAGAC | 1 cut(s) | 144 |
| BstX2I | RGATCY | 5 cut(s) | 637, 1189, 1258, 1897, 3237 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 849, 1581, 2237, 3305 |
| BstYI | RGATCY | 5 cut(s) | 637, 1189, 1258, 1897, 3237 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3171 |
| BsuI | GTATCC | 3 cut(s) | 906, 993, 1581 |
| BtgI | CCRYGG | 1 cut(s) | 1041 |
| BtgZI | GCGATG | 2 cut(s) | 1884, 2307 |
| BtrI | CACGTC | 1 cut(s) | 1764 |
| BtsI | GCAGTG | 1 cut(s) | 1056 |
| BtsIMutI | CAGTG | 8 cut(s) | 847, 1056, 1395, 1538, 1641, 2131, 2444, 2727 |
| BveI | ACCTGC | 1 cut(s) | 1263 |
| Cac8I | GCNNGC | 6 cut(s) | 1130, 1140, 2394, 2442, 2778, 3339 |
| CaiI | CAGNNNCTG | 4 cut(s) | 122, 884, 1370, 3213 |
| CciI | TCATGA | 1 cut(s) | 448 |
| Cfr13I | GGNCC | 8 cut(s) | 245, 455, 808, 1219, 1357, 3136, 3190, 3339 |
| Cfr42I | CCGCGG | 1 cut(s) | 1044 |
| CseI | GACGC | 1 cut(s) | 2249 |
| Csp6I | GTAC | 7 cut(s) | 1085, 1196, 1487, 1882, 2038, 2725, 2883 |
| CviQI | GTAC | 7 cut(s) | 1085, 1196, 1487, 1882, 2038, 2725, 2883 |
| DraI | TTTAAA | 1 cut(s) | 2166 |
| EaeI | YGGCCR | 4 cut(s) | 51, 487, 999, 2774 |
| Eam1104I | CTCTTC | 1 cut(s) | 1987 |
| EarI | CTCTTC | 1 cut(s) | 1987 |
| Eco130I | CCWWGG | 2 cut(s) | 15, 2916 |
| Eco147I | AGGCCT | 1 cut(s) | 2016 |
| Eco31I | GGTCTC | 1 cut(s) | 243 |
| Eco47I | GGWCC | 5 cut(s) | 245, 455, 808, 1357, 3190 |
| Eco57I | CTGAAG | 5 cut(s) | 294, 359, 945, 1170, 1244 |
| Eco81I | CCTNAGG | 1 cut(s) | 3171 |
| Eco88I | CYCGRG | 1 cut(s) | 240 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 878 |
| EcoO109I | RGGNCCY | 3 cut(s) | 245, 1219, 3136 |
| EcoRI | GAATTC | 2 cut(s) | 164, 349 |
| EcoRII | CCWGG | 4 cut(s) | 1019, 1369, 3021, 3381 |
| EcoT14I | CCWWGG | 2 cut(s) | 15, 2916 |
| EcoT22I | ATGCAT | 1 cut(s) | 1876 |
| ErhI | CCWWGG | 2 cut(s) | 15, 2916 |
| Esp3I | CGTCTC | 1 cut(s) | 2267 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 543, 575, 566, 598 |
| FaqI | GGGAC | 2 cut(s) | 258, 3295 |
| FauI | CCCGC | 1 cut(s) | 3330 |
| FauNDI | CATATG | 1 cut(s) | 1576 |
| FbaI | TGATCA | 4 cut(s) | 619, 1542, 1834, 2434 |
| FblI | GTMKAC | 2 cut(s) | 2196, 2922 |
| FspBI | CTAG | 5 cut(s) | 204, 1728, 1908, 2613, 2904 |
| GsuI | CTGGAG | 3 cut(s) | 871, 1413, 1781 |
| HapII | CCGG | 3 cut(s) | 899, 1119, 3188 |
| HgaI | GACGC | 1 cut(s) | 2249 |
| HincII | GTYRAC | 3 cut(s) | 2088, 2545, 3094 |
| HindII | GTYRAC | 3 cut(s) | 2088, 2545, 3094 |
| HindIII | AAGCTT | 2 cut(s) | 1061, 1226 |
| HpaI | GTTAAC | 1 cut(s) | 2088 |
| HpaII | CCGG | 3 cut(s) | 899, 1119, 3188 |
| HphI | GGTGA | 4 cut(s) | 485, 1784, 2869, 3159 |
| HpyCH4III | ACNGT | 6 cut(s) | 313, 691, 1089, 2209, 2448, 2632 |
| HpyCH4IV | ACGT | 3 cut(s) | 1763, 2190, 2589 |
| HpySE526I | ACGT | 3 cut(s) | 1763, 2190, 2589 |
| Kpn2I | TCCGGA | 2 cut(s) | 898, 3187 |
| Ksp22I | TGATCA | 4 cut(s) | 619, 1542, 1834, 2434 |
| KspAI | GTTAAC | 1 cut(s) | 2088 |
| KspI | CCGCGG | 1 cut(s) | 1044 |
| LguI | GCTCTTC | 1 cut(s) | 1987 |
| LmnI | GCTCC | 8 cut(s) | 111, 918, 1372, 2119, 2246, 2652, 2677, 3295 |
| Lsp1109I | GCAGC | 9 cut(s) | 244, 298, 613, 680, 766, 1978, 2987, 3200, 3219 |
| MaeI | CTAG | 5 cut(s) | 204, 1728, 1908, 2613, 2904 |
| MaeII | ACGT | 3 cut(s) | 1763, 2190, 2589 |
| MaeIII | GTNAC | 3 cut(s) | 1393, 1536, 2186 |
| MbiI | CCGCTC | 1 cut(s) | 1734 |
| MfeI | CAATTG | 1 cut(s) | 1668 |
| MflI | RGATCY | 5 cut(s) | 637, 1189, 1258, 1897, 3237 |
| MhlI | GDGCHC | 4 cut(s) | 116, 952, 2311, 2600 |
| MlsI | TGGCCA | 3 cut(s) | 53, 1001, 2776 |
| MluNI | TGGCCA | 3 cut(s) | 53, 1001, 2776 |
| MlyI | GAGTC | 5 cut(s) | 751, 862, 913, 1349, 1967 |
| MmeI | TCCRAC | 3 cut(s) | 870, 980, 2850 |
| Mox20I | TGGCCA | 3 cut(s) | 53, 1001, 2776 |
| Mph1103I | ATGCAT | 1 cut(s) | 1876 |
| MroI | TCCGGA | 2 cut(s) | 898, 3187 |
| MroXI | GAANNNNTTC | 4 cut(s) | 151, 164, 1169, 1644 |
| MscI | TGGCCA | 3 cut(s) | 53, 1001, 2776 |
| MslI | CAYNNNNRTG | 1 cut(s) | 204 |
| Msp20I | TGGCCA | 3 cut(s) | 53, 1001, 2776 |
| MspA1I | CMGCKG | 3 cut(s) | 1043, 2530, 3213 |
| MspCI | CTTAAG | 1 cut(s) | 1403 |
| MspI | CCGG | 3 cut(s) | 899, 1119, 3188 |
| MspR9I | CCNGG | 4 cut(s) | 1021, 1371, 3023, 3383 |
| MunI | CAATTG | 1 cut(s) | 1668 |
| Mva1269I | GAATGC | 1 cut(s) | 199 |
| MvaI | CCWGG | 4 cut(s) | 1021, 1371, 3023, 3383 |
| MvnI | CGCG | 2 cut(s) | 1043, 1753 |
| NdeI | CATATG | 1 cut(s) | 1576 |
| NlaIV | GGNNCC | 8 cut(s) | 246, 1220, 1809, 2072, 2115, 3181, 3267, 3291 |
| NmuCI | GTSAC | 2 cut(s) | 1393, 1536 |
| NsiI | ATGCAT | 1 cut(s) | 1876 |
| NspI | RCATGY | 2 cut(s) | 2396, 2444 |
| NspV | TTCGAA | 1 cut(s) | 2783 |
| PaeI | GCATGC | 2 cut(s) | 2396, 2444 |
| PagI | TCATGA | 1 cut(s) | 448 |
| PceI | AGGCCT | 1 cut(s) | 2016 |
| PciSI | GCTCTTC | 1 cut(s) | 1987 |
| PctI | GAATGC | 1 cut(s) | 199 |
| PdmI | GAANNNNTTC | 4 cut(s) | 151, 164, 1169, 1644 |
| PfeI | GAWTC | 8 cut(s) | 58, 568, 707, 1553, 1687, 2765, 2939, 3001 |
| PflFI | GACNNNGTC | 1 cut(s) | 1377 |
| PfoI | TCCNGGA | 1 cut(s) | 1369 |
| PleI | GAGTC | 5 cut(s) | 751, 861, 912, 1348, 1967 |
| PpsI | GAGTC | 5 cut(s) | 751, 861, 912, 1348, 1967 |
| PpuMI | RGGWCCY | 1 cut(s) | 245 |
| PshBI | ATTAAT | 1 cut(s) | 522 |
| PsiI | TTATAA | 1 cut(s) | 531 |
| Psp1406I | AACGTT | 1 cut(s) | 2190 |
| Psp5II | RGGWCCY | 1 cut(s) | 245 |
| Psp6I | CCWGG | 4 cut(s) | 1019, 1369, 3021, 3381 |
| PspGI | CCWGG | 4 cut(s) | 1019, 1369, 3021, 3381 |
| PspN4I | GGNNCC | 8 cut(s) | 246, 1220, 1809, 2072, 2115, 3181, 3267, 3291 |
| PspPI | GGNCC | 8 cut(s) | 245, 455, 808, 1219, 1357, 3136, 3190, 3339 |
| PspPPI | RGGWCCY | 1 cut(s) | 245 |
| PstI | CTGCAG | 5 cut(s) | 1274, 1996, 2032, 2977, 3372 |
| PstNI | CAGNNNCTG | 4 cut(s) | 122, 884, 1370, 3213 |
| PsuI | RGATCY | 5 cut(s) | 637, 1189, 1258, 1897, 3237 |
| PsyI | GACNNNGTC | 1 cut(s) | 1377 |
| RsaI | GTAC | 7 cut(s) | 1086, 1197, 1488, 1883, 2039, 2726, 2884 |
| RsaNI | GTAC | 7 cut(s) | 1085, 1196, 1487, 1882, 2038, 2725, 2883 |
| RseI | CAYNNNNRTG | 1 cut(s) | 204 |
| SacII | CCGCGG | 1 cut(s) | 1044 |
| SapI | GCTCTTC | 1 cut(s) | 1987 |
| Sau96I | GGNCC | 8 cut(s) | 245, 455, 808, 1219, 1357, 3136, 3190, 3339 |
| SchI | GAGTC | 5 cut(s) | 751, 862, 913, 1349, 1967 |
| ScrFI | CCNGG | 4 cut(s) | 1021, 1371, 3023, 3383 |
| SduI | GDGCHC | 4 cut(s) | 116, 952, 2311, 2600 |
| SfcI | CTRYAG | 6 cut(s) | 826, 1270, 1992, 2028, 2973, 3368 |
| Sfr303I | CCGCGG | 1 cut(s) | 1044 |
| SfuI | TTCGAA | 1 cut(s) | 2783 |
| SgrBI | CCGCGG | 1 cut(s) | 1044 |
| SinI | GGWCC | 5 cut(s) | 245, 455, 808, 1357, 3190 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 204 |
| SmlI | CTYRAG | 6 cut(s) | 1151, 1262, 1403, 2310, 2840, 2953 |
| SmoI | CTYRAG | 6 cut(s) | 1151, 1262, 1403, 2310, 2840, 2953 |
| SphI | GCATGC | 2 cut(s) | 2396, 2444 |
| SseBI | AGGCCT | 1 cut(s) | 2016 |
| SspI | AATATT | 2 cut(s) | 1504, 2679 |
| SspMI | CTAG | 5 cut(s) | 204, 1728, 1908, 2613, 2904 |
| StuI | AGGCCT | 1 cut(s) | 2016 |
| StyD4I | CCNGG | 4 cut(s) | 1019, 1369, 3021, 3381 |
| StyI | CCWWGG | 2 cut(s) | 15, 2916 |
| TaaI | ACNGT | 6 cut(s) | 313, 691, 1089, 2209, 2448, 2632 |
| TaiI | ACGT | 3 cut(s) | 1766, 2193, 2592 |
| TaqI | TCGA | 4 cut(s) | 315, 631, 1971, 2783 |
| TatI | WGTACW | 3 cut(s) | 1084, 1486, 2724 |
| TauI | GCSGC | 6 cut(s) | 44, 272, 1043, 1734, 1756, 3213 |
| TfiI | GAWTC | 8 cut(s) | 58, 568, 707, 1553, 1687, 2765, 2939, 3001 |
| TscAI | CASTG | 8 cut(s) | 854, 1056, 1402, 1545, 1641, 2131, 2451, 2734 |
| TseFI | GTSAC | 2 cut(s) | 1393, 1536 |
| TseI | GCWGC | 9 cut(s) | 257, 286, 626, 668, 779, 1991, 2975, 3207, 3213 |
| Tsp45I | GTSAC | 2 cut(s) | 1393, 1536 |
| TspGWI | ACGGA | 1 cut(s) | 2309 |
| TspRI | CASTG | 8 cut(s) | 854, 1056, 1402, 1545, 1641, 2131, 2451, 2734 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1377 |
| Vha464I | CTTAAG | 1 cut(s) | 1403 |
| VneI | GTGCAC | 1 cut(s) | 948 |
| VpaK11BI | GGWCC | 5 cut(s) | 245, 455, 808, 1357, 3190 |
| VspI | ATTAAT | 1 cut(s) | 522 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 878 |
| XapI | RAATTY | 8 cut(s) | 4, 164, 349, 1469, 2461, 2554, 2753, 2835 |
| XceI | RCATGY | 2 cut(s) | 2396, 2444 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1367 |
| XmiI | GTMKAC | 2 cut(s) | 2196, 2922 |
| XmnI | GAANNNNTTC | 4 cut(s) | 151, 164, 1169, 1644 |
| XspI | CTAG | 5 cut(s) | 204, 1728, 1908, 2613, 2904 |
| Zsp2I | ATGCAT | 1 cut(s) | 1876 |