Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0007310

Physical Location & Seq

Genomic Coordinates Forward (+)

40794032 .. 40807367

Gene Structure 13336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG241400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3015 bp

ATGGCTGCAAAGAAAGCGGCTGAAGGGGGAAAGCAGCAGGATGGAAAATACAAGCACACGGTCGATCTGCCAAAGACATCATTTGGCATGAGAGCGAATTCTTCAACACGAGAGCCTGAACTTCAGAAAATATGGGAGGACAATCAAGTGTTCAAGAGAGTAGTTAGTAAAAATACAGGGGAAAACTTCATTCTTCATGATGGTCCTCCATATGCCAACGGTGATCTGCACATCGGCCATGCTCTAAATAAGATTTTGAAGGATATGATTAATCGTTATAAGCTTCTTCAAAATTATAAAGTTCATTATGTGCCTGGTTGGGATTGTCATGGCTTACCAATTGAATTGAAAGTCCTGCAATCCCTTGATCAAGCTGCTCGAAAGGATCTCACACCAATAAAGTTGAGAGCGAAGGCAGCTAAGTTTGCCAAGCAAACAGTTAAAAATCAGATGGAATCATTTAAGCGTTATGGAATATGGGCAGACTGGAATAATCCCTACCTGACTCTTGATCCAGAATATGAAGCTGCTCAGATAGAAGTGTTTGGTCAGATGGTCCTTCAAGGTTTTATCTACAGAGGCAGGAAACCAGTTCACTGGAGTCCCTCATCACGAACTGCCCTTGCAGAGGCTGAGTTGGAGTATCCGGAGAGTCATGTTTCAAGGAGCATCTATACCGCTTTCAAATTAGTGAGTGCACCTCCAACTTCAGGTGGCTTATTGAATGAGTATCCAGATGTTTGCTTGGCCATTTGGACAACTACTCCCTGGACTATTCCAGCAAATGCCGCGGTTGCAGTGAATGCCAAGCTTATATATGCCATTGTTGAAGTACAGTCAGTCTCCGAAGATGTTTCTTCATCTGCCGGAAATAGCAAGCAAACGCCTGCTAATTTTCTCAAGGAAGAAAAGAAGCCTTTCCTCATTGTAGCTTCAGATCTTGTACCAACTTTAGAAGCAAAATGGGGCCTGAAGCTTGTTGTTAGGAAAAGGGTGTCAGGTTCAGATCTTGAGAACTGCAGGTATATCCATCCAGTATTTAATAGGGAATGTTCAGTTGTGATTGGAGGAGATTATATCACAACAGAGTCGGGAACTGGACTGGTCCATACAGCTCCTGGACATGGTCAGGAAGATTATGTCACTGGCCTCAAGTATGGACTGCCTATTCTTTCTCCAGTAGATGATGATGGAAAGTTCACAGAAGAAGCTGGAAAATTTTGTGGGCTTGATGTACTTGCTGATGGTAATATTGCTGTTGTGAAATACTTGGATGAGCATTTGTCACTGATCATGGAAGAATCCTACAAACATAAGTATCCATATGATTGGAGAACAAAAAAGCCCACTATATTTAGGGCAACTGAGCAATGGTTTGCATCAGTGGAAGGCTTTCGTGAGGCTGTTATGGATGCAATTGGCAATGTAAAATGGATTCCAGCTAAGGCAGAAAACAGAATATCTGCAATGACTTCTAGCCGCTCTGATTGGTGTATATCGCGGCAGAGGACGTGGGGTGTTCCAATTCCAGTCTTTTATCACCTCCAGTCAAAGGAACCTCTAATGAATGAGGAGACTATTGATCATATCAAGTCTATAATTTCTGAAAAGGGTAGCGATGCATGGTGGTACATGAAGGTAGAGGATCTTCTCCCTAGTAAATATCGTGATAAAGCATCCGAATATGAAAAGGGAACTGACACAATGGATGTATGGTTCGACTCAGGCTCTTCTTGGGCTGCAGTTTTAGGAAAAAGAAAAGGCCTTAGTCTCCCTGCAGACTTGTACCTTGAAGGTATGGATCAGCATCGTGGGTGGTTCCAGAGTTCTTTGTTAACAAGTGTTGCTACAAAAGGAAAGGCTCCATATTCCAGTGTCATAACACATGGATTTGTATTGGATGAGAAGGGTTTAAAGATGAGCAAATCTCAGGGTAACGTTGTAGACCCAAGAACTGTGATTGAAGGAGGGAAGAACCAAAAGGATGGCTATGGAGCTGATGTTCTGCGTCTCTGGGTTTCCAGCATAGATTATACAGGCGATGTTATGATAGGTGCTCAAGTTCTCCGTCAAATGTCAGATATATATAGGAAGCTACGAGGAACATTGAGATACCTTTTGGGAAATCTGCATGATTGGCATGCTGATAATGCTATTTCATACCACGATCTTCCCATGATTGATCAGCATGCACTGTTTCAACTTGAAAATTTTGTAAACAACAGCAGAGAGTGCTATGAAAGTTATCAGTTCTTTAAGATATTTCAGATCATACAGCGGTTTGTCATTGTTGACCTATCAAATTTCTACTTTGATATTGCCAAAGATCGTTTATACGTTGGGGGCACGACAAGTTTTACTAGGAGAAGTTGTCAGACGGTTCTTGCAGAACTGCTCCTTTCTATTGTGAGAGTGATTGCTCCAATATTGCCTCATTTGGCTGAGGATGTATGGCAAAATCTTCCATTCCAGTACACTGACAAAAATGGCTCTGTTGCGGAATTTGTTTTTGAATCAAGATGGCCAGCTTCGAATGAAACATGGCTCTCTCTTTCTAAAGAGGAAACTGATTTCTGGACTAAAATTCTTGAGCTGAGAACCGAGGTGAATAAAGTGTTGGAGATTGCTCGTACAACAAAGTTAATTGGCTCTAGCTTAGATGCCAAGGTCTACCTCCATACATCGGATTCTGGTCTGGCCTCAAGATTGGTTCAAATGTCTGCAGCCAACAACGATGCAGACACATTGAATCGGATATTCATAACTTCCCAGGCAGAGGTTCTTCCATCCTTAGAAGATGACTGGATTGCGAATATACCACATAAAGGAGAATGTCAAGTTGACGAAAGCATTAATGTTTGGATTGGTGTGTCTCGTGCTGAGGGCCTAAAGTGTGAAAGATGCTGGAACTATTCACCTCAGGTTGGTTCCTTTCCGGACCACAGCACTCTTTGCAGCCGCTGCTATGATGTGGTTGATATTCAACAAGCTGCAGCTGAAGCTGTTGTCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009908 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1 zf-FPG_IleRS

Protein Analysis

1004

Amino Acids

113.21

Weight (kDa)

6.13

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	41 - 683	7.5e-134	tRNA synthetases class I (I, L, M and V)
tRNA-synt_1g	PF09334	70 - 214	4.8e-13	tRNA synthetases class I (M)
Anticodon_1	PF08264	728 - 891	4.5e-30	Anticodon-binding domain of tRNA ligase
zf-FPG_IleRS	PF06827	962 - 991	4.4e-08	Zinc finger found in FPG and IleRS

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49030 AT5G49030 AT5G49030
fragaria_vesca	FvH4_4g18060 FvH4_4g18060 FvH4_4g18060 FvH4_4g18060 FvH4_4g18060 FvH4_4g18060
malus_domestica	MD13G1168400.v1.1 MD16G1168800.v1.1
prunus_persica	Prupe.1G136500_v2.0.a1 Prupe.1G136500_v2.0.a1
pyrus_communis	pycom13g14400 pycom16g14210
rosa_chinensis	RchiOBHm_Chr4g0422271
rosa_laevigata	RLG00000007623
rosa_multiflora	Rmu_sc0013245.1_g000018
rosa_roxburghii	Rroxscaffold_5G00364380
rosa_rugosa	Rorug04G0179100
rosa_samantha	Rh4AG238300 Rh4BG241400 Rh4CG253300 Rh4DG237000
rosa_wichuraiana	Rw4G020620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	279, 297
Acc36I	ACCTGC	1 cut(s)	1011
AccBSI	CCGCTC	1 cut(s)	1482
AccI	GTMKAC	2 cut(s)	1944, 2670
AccII	CGCG	2 cut(s)	791, 1501
AccIII	TCCGGA	2 cut(s)	646, 2935
AciI	CCGC	9 cut(s)	17, 678, 789, 791, 1480, 1501, 2278, 2498, 2959
AclI	AACGTT	1 cut(s)	1938
AclWI	GGATC	4 cut(s)	393, 506, 1653, 1809
AcoI	YGGCCR	3 cut(s)	235, 747, 2522
AcsI	RAATTY	6 cut(s)	97, 1217, 2209, 2302, 2501, 2583
AcuI	CTGAAG	5 cut(s)	42, 107, 693, 918, 992
AfaI	GTAC	7 cut(s)	834, 945, 1236, 1631, 1787, 2474, 2632
AfiI	CCNNNNNNNGG	8 cut(s)	628, 710, 1124, 1552, 2683, 2776, 2825, 2924
AjiI	CACGTC	1 cut(s)	1512
AjnI	CCWGG	4 cut(s)	313, 767, 1117, 2769
AjuI	GAANNNNNNNTTGG	2 cut(s)	2600, 2632
AloI	GAACNNNNNNTCC	4 cut(s)	1700, 1732, 1986, 2018
Alw21I	GWGCWC	2 cut(s)	700, 2059
Alw26I	GTCTC	5 cut(s)	847, 1568, 1775, 2015, 2877
Alw44I	GTGCAC	1 cut(s)	696
AlwI	GGATC	4 cut(s)	393, 506, 1653, 1809
AlwNI	CAGNNNCTG	3 cut(s)	632, 1118, 2961
Aor13HI	TCCGGA	2 cut(s)	646, 2935
AoxI	GGCC	8 cut(s)	235, 747, 967, 1147, 1762, 2522, 2697, 2884
ApaLI	GTGCAC	1 cut(s)	696
ApoI	RAATTY	6 cut(s)	97, 1217, 2209, 2302, 2501, 2583
AseI	ATTAAT	2 cut(s)	270, 2853
Asp700I	GAANNNNTTC	2 cut(s)	917, 1392
AspS9I	GGNCC	6 cut(s)	203, 556, 967, 1105, 2884, 2938
AsuHPI	GGTGA	4 cut(s)	233, 1532, 2617, 2907
AsuII	TTCGAA	1 cut(s)	2531
AvaII	GGWCC	4 cut(s)	203, 556, 1105, 2938
AxyI	CCTNAGG	1 cut(s)	2919
BaeGI	GKGCMC	2 cut(s)	700, 2348
BaeI	ACNNNNGTAYC	2 cut(s)	1301, 1334
BalI	TGGCCA	2 cut(s)	749, 2524
BarI	GAAGNNNNNNTAC	2 cut(s)	1632, 1664
BauI	CACGAG	2 cut(s)	108, 2874
Bbv12I	GWGCWC	2 cut(s)	700, 2059
BbvCI	CCTCAGC	2 cut(s)	2442, 2880
BciT130I	CCWGG	4 cut(s)	315, 769, 1119, 2771
BciVI	GTATCC	3 cut(s)	654, 741, 1329
BclI	TGATCA	4 cut(s)	367, 1290, 1582, 2182
BcoDI	GTCTC	5 cut(s)	847, 1568, 1775, 2015, 2877
BfaI	CTAG	4 cut(s)	1476, 1656, 2361, 2652
BfmI	CTRYAG	6 cut(s)	574, 1018, 1740, 1776, 2721, 2991
BfuAI	ACCTGC	1 cut(s)	1011
BfuI	GTATCC	3 cut(s)	654, 741, 1329
BglII	AGATCT	2 cut(s)	937, 1006
Bme1390I	CCNGG	4 cut(s)	315, 769, 1119, 2771
Bme18I	GGWCC	4 cut(s)	203, 556, 1105, 2938
BmgBI	CACGTC	1 cut(s)	1512
BmgT120I	GGNCC	6 cut(s)	203, 556, 967, 1105, 2884, 2938
BmiI	GGNNCC	5 cut(s)	968, 1557, 1820, 1863, 2929
BmrFI	CCNGG	4 cut(s)	315, 769, 1119, 2771
BmsI	GCATC	9 cut(s)	678, 1388, 1402, 1609, 1685, 1816, 2650, 2725, 2891
BplI	GAGNNNNNCTC	4 cut(s)	685, 717, 1912, 1944
BpmI	CTGGAG	3 cut(s)	619, 1161, 1529
Bpu10I	CCTNAGC	3 cut(s)	1443, 2442, 2880
Bpu14I	TTCGAA	1 cut(s)	2531
BpuEI	CTTGAG	6 cut(s)	884, 1031, 1136, 2043, 2609, 2686
BsaBI	GATNNNNATC	1 cut(s)	1806
BsaJI	CCNNGG	5 cut(s)	767, 789, 2601, 2664, 2769
BsaWI	WCCGGW	2 cut(s)	646, 2935
BsaXI	ACNNNNNCTCC	6 cut(s)	748, 778, 1986, 2016, 2356, 2386
Bsc4I	CCNNNNNNNGG	8 cut(s)	628, 710, 1124, 1552, 2683, 2776, 2825, 2924
Bse21I	CCTNAGG	1 cut(s)	2919
Bse3DI	GCAATG	3 cut(s)	1376, 1429, 1473
Bse8I	GATNNNNATC	1 cut(s)	1806
BseAI	TCCGGA	2 cut(s)	646, 2935
BseBI	CCWGG	4 cut(s)	315, 769, 1119, 2771
BseDI	CCNNGG	5 cut(s)	767, 789, 2601, 2664, 2769
BseJI	GATNNNNATC	1 cut(s)	1806
BseLI	CCNNNNNNNGG	8 cut(s)	628, 710, 1124, 1552, 2683, 2776, 2825, 2924
BseMI	GCAATG	3 cut(s)	1376, 1429, 1473
BseMII	CTCAG	9 cut(s)	545, 624, 1356, 1737, 1943, 2433, 2585, 2871, 2933
BseRI	GAGGAG	2 cut(s)	1083, 1586
BseSI	GKGCMC	2 cut(s)	700, 2348
BsgI	GTGCAG	1 cut(s)	212
Bsh1236I	CGCG	2 cut(s)	791, 1501
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	8 cut(s)	237, 749, 969, 1149, 1764, 2524, 2699, 2886
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	2 cut(s)	700, 2059
BsiSI	CCGG	3 cut(s)	647, 867, 2936
BslFI	GGGAC	1 cut(s)	588
BslI	CCNNNNNNNGG	8 cut(s)	628, 710, 1124, 1552, 2683, 2776, 2825, 2924
BsmAI	GTCTC	5 cut(s)	847, 1568, 1775, 2015, 2877
BsmBI	CGTCTC	1 cut(s)	2015
BsmFI	GGGAC	1 cut(s)	588
BsmI	GAATGC	1 cut(s)	808
BsnI	GGCC	8 cut(s)	237, 749, 969, 1149, 1764, 2524, 2699, 2886
Bsp119I	TTCGAA	1 cut(s)	2531
Bsp1286I	GDGCHC	3 cut(s)	700, 2059, 2348
Bsp13I	TCCGGA	2 cut(s)	646, 2935
BspACI	CCGC	9 cut(s)	17, 678, 789, 791, 1480, 1501, 2278, 2498, 2959
BspANI	GGCC	8 cut(s)	237, 749, 969, 1149, 1764, 2524, 2699, 2886
BspCNI	CTCAG	9 cut(s)	544, 625, 1357, 1736, 1942, 2434, 2586, 2872, 2932
BspEI	TCCGGA	2 cut(s)	646, 2935
BspFNI	CGCG	2 cut(s)	791, 1501
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	5 cut(s)	968, 1557, 1820, 1863, 2929
BspMAI	CTGCAG	5 cut(s)	1022, 1744, 1780, 2725, 2995
BspMI	ACCTGC	1 cut(s)	1011
BspPI	GGATC	4 cut(s)	393, 506, 1653, 1809
BspQI	GCTCTTC	1 cut(s)	1735
BspT104I	TTCGAA	1 cut(s)	2531
BsrBI	CCGCTC	1 cut(s)	1482
BsrDI	GCAATG	3 cut(s)	1376, 1429, 1473
BssECI	CCNNGG	5 cut(s)	767, 789, 2601, 2664, 2769
BssSI	CACGAG	2 cut(s)	108, 2874
BssT1I	CCWWGG	1 cut(s)	2664
Bst2BI	CACGAG	2 cut(s)	108, 2874
Bst2UI	CCWGG	4 cut(s)	315, 769, 1119, 2771
Bst4CI	ACNGT	7 cut(s)	61, 221, 439, 837, 1957, 2196, 2380
Bst6I	CTCTTC	1 cut(s)	1735
BstAPI	GCANNNNNTGC	4 cut(s)	803, 2232, 2952, 2961
BstBI	TTCGAA	1 cut(s)	2531
BstC8I	GCNNGC	5 cut(s)	878, 888, 2142, 2190, 2526
BstDSI	CCRYGG	1 cut(s)	789
BstENI	CCTNNNNNAGG	1 cut(s)	626
BstFNI	CGCG	2 cut(s)	791, 1501
BstMAI	GTCTC	5 cut(s)	847, 1568, 1775, 2015, 2877
BstMCI	CGRYCG	1 cut(s)	63
BstNI	CCWGG	4 cut(s)	315, 769, 1119, 2771
BstNSI	RCATGY	2 cut(s)	2144, 2192
BstSCI	CCNGG	4 cut(s)	313, 767, 1117, 2769
BstSFI	CTRYAG	6 cut(s)	574, 1018, 1740, 1776, 2721, 2991
BstSLI	GKGCMC	2 cut(s)	700, 2348
BstUI	CGCG	2 cut(s)	791, 1501
BstX2I	RGATCY	4 cut(s)	385, 937, 1006, 1645
BstXI	CCANNNNNNTGG	3 cut(s)	597, 1329, 1985
BstYI	RGATCY	4 cut(s)	385, 937, 1006, 1645
Bsu36I	CCTNAGG	1 cut(s)	2919
BsuI	GTATCC	3 cut(s)	654, 741, 1329
BsuRI	GGCC	8 cut(s)	237, 749, 969, 1149, 1764, 2524, 2699, 2886
BtgI	CCRYGG	1 cut(s)	789
BtgZI	GCGATG	2 cut(s)	1632, 2055
BtrI	CACGTC	1 cut(s)	1512
BtsI	GCAGTG	1 cut(s)	804
BtsIMutI	CAGTG	8 cut(s)	595, 804, 1143, 1286, 1389, 1879, 2192, 2475
BveI	ACCTGC	1 cut(s)	1011
Cac8I	GCNNGC	5 cut(s)	878, 888, 2142, 2190, 2526
CaiI	CAGNNNCTG	3 cut(s)	632, 1118, 2961
CciI	TCATGA	1 cut(s)	196
Cfr13I	GGNCC	6 cut(s)	203, 556, 967, 1105, 2884, 2938
Cfr42I	CCGCGG	1 cut(s)	792
CseI	GACGC	1 cut(s)	1997
Csp6I	GTAC	7 cut(s)	833, 944, 1235, 1630, 1786, 2473, 2631
CviQI	GTAC	7 cut(s)	833, 944, 1235, 1630, 1786, 2473, 2631
DraI	TTTAAA	1 cut(s)	1914
EaeI	YGGCCR	3 cut(s)	235, 747, 2522
Eam1104I	CTCTTC	1 cut(s)	1735
EarI	CTCTTC	1 cut(s)	1735
Eco130I	CCWWGG	1 cut(s)	2664
Eco147I	AGGCCT	1 cut(s)	1764
Eco47I	GGWCC	4 cut(s)	203, 556, 1105, 2938
Eco57I	CTGAAG	5 cut(s)	42, 107, 693, 918, 992
Eco81I	CCTNAGG	1 cut(s)	2919
EcoNI	CCTNNNNNAGG	1 cut(s)	626
EcoO109I	RGGNCCY	2 cut(s)	967, 2884
EcoRI	GAATTC	1 cut(s)	97
EcoRII	CCWGG	4 cut(s)	313, 767, 1117, 2769
EcoT14I	CCWWGG	1 cut(s)	2664
EcoT22I	ATGCAT	1 cut(s)	1624
ErhI	CCWWGG	1 cut(s)	2664
Esp3I	CGTCTC	1 cut(s)	2015
FaqI	GGGAC	1 cut(s)	588
FauNDI	CATATG	2 cut(s)	211, 1324
FbaI	TGATCA	4 cut(s)	367, 1290, 1582, 2182
FblI	GTMKAC	2 cut(s)	1944, 2670
FspBI	CTAG	4 cut(s)	1476, 1656, 2361, 2652
GsuI	CTGGAG	3 cut(s)	619, 1161, 1529
HaeIII	GGCC	8 cut(s)	237, 749, 969, 1149, 1764, 2524, 2699, 2886
HapII	CCGG	3 cut(s)	647, 867, 2936
HgaI	GACGC	1 cut(s)	1997
HincII	GTYRAC	3 cut(s)	1836, 2293, 2842
HindII	GTYRAC	3 cut(s)	1836, 2293, 2842
HindIII	AAGCTT	3 cut(s)	281, 809, 974
HpaI	GTTAAC	1 cut(s)	1836
HpaII	CCGG	3 cut(s)	647, 867, 2936
HphI	GGTGA	4 cut(s)	233, 1532, 2617, 2907
HpyAV	CCTTC	9 cut(s)	17, 253, 406, 569, 1382, 1630, 1787, 1900, 1958
HpyCH4III	ACNGT	7 cut(s)	61, 221, 439, 837, 1957, 2196, 2380
HpyCH4IV	ACGT	3 cut(s)	1511, 1938, 2337
HpySE526I	ACGT	3 cut(s)	1511, 1938, 2337
Kpn2I	TCCGGA	2 cut(s)	646, 2935
Ksp22I	TGATCA	4 cut(s)	367, 1290, 1582, 2182
KspAI	GTTAAC	1 cut(s)	1836
KspI	CCGCGG	1 cut(s)	792
LguI	GCTCTTC	1 cut(s)	1735
LmnI	GCTCC	6 cut(s)	666, 1120, 1867, 1994, 2400, 2425
LweI	GCATC	9 cut(s)	678, 1388, 1402, 1609, 1685, 1816, 2650, 2725, 2891
MaeI	CTAG	4 cut(s)	1476, 1656, 2361, 2652
MaeII	ACGT	3 cut(s)	1511, 1938, 2337
MaeIII	GTNAC	3 cut(s)	1141, 1284, 1934
MbiI	CCGCTC	1 cut(s)	1482
MfeI	CAATTG	2 cut(s)	339, 1416
MflI	RGATCY	4 cut(s)	385, 937, 1006, 1645
MhlI	GDGCHC	3 cut(s)	700, 2059, 2348
MlsI	TGGCCA	2 cut(s)	749, 2524
MluNI	TGGCCA	2 cut(s)	749, 2524
MlyI	GAGTC	5 cut(s)	499, 610, 661, 1097, 1715
MmeI	TCCRAC	3 cut(s)	618, 728, 2598
Mox20I	TGGCCA	2 cut(s)	749, 2524
Mph1103I	ATGCAT	1 cut(s)	1624
MroI	TCCGGA	2 cut(s)	646, 2935
MroXI	GAANNNNTTC	2 cut(s)	917, 1392
MscI	TGGCCA	2 cut(s)	749, 2524
MseI	TTAA	9 cut(s)	270, 441, 462, 1041, 1835, 1913, 2256, 2642, 2853
Msp20I	TGGCCA	2 cut(s)	749, 2524
MspA1I	CMGCKG	4 cut(s)	791, 2278, 2961, 2996
MspI	CCGG	3 cut(s)	647, 867, 2936
MspR9I	CCNGG	4 cut(s)	315, 769, 1119, 2771
MunI	CAATTG	2 cut(s)	339, 1416
Mva1269I	GAATGC	1 cut(s)	808
MvaI	CCWGG	4 cut(s)	315, 769, 1119, 2771
MvnI	CGCG	2 cut(s)	791, 1501
NdeI	CATATG	2 cut(s)	211, 1324
NlaIV	GGNNCC	5 cut(s)	968, 1557, 1820, 1863, 2929
NmuCI	GTSAC	2 cut(s)	1141, 1284
NsiI	ATGCAT	1 cut(s)	1624
NspI	RCATGY	2 cut(s)	2144, 2192
NspV	TTCGAA	1 cut(s)	2531
PaeI	GCATGC	2 cut(s)	2144, 2192
PagI	TCATGA	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	1764
PciSI	GCTCTTC	1 cut(s)	1735
PctI	GAATGC	1 cut(s)	808
PdmI	GAANNNNTTC	2 cut(s)	917, 1392
PfeI	GAWTC	6 cut(s)	455, 1301, 1435, 2513, 2687, 2749
PflFI	GACNNNGTC	1 cut(s)	1125
PfoI	TCCNGGA	1 cut(s)	1117
PleI	GAGTC	5 cut(s)	499, 609, 660, 1096, 1715
PpsI	GAGTC	5 cut(s)	499, 609, 660, 1096, 1715
PshBI	ATTAAT	2 cut(s)	270, 2853
PsiI	TTATAA	2 cut(s)	279, 297
Psp1406I	AACGTT	1 cut(s)	1938
Psp6I	CCWGG	4 cut(s)	313, 767, 1117, 2769
PspGI	CCWGG	4 cut(s)	313, 767, 1117, 2769
PspN4I	GGNNCC	5 cut(s)	968, 1557, 1820, 1863, 2929
PspPI	GGNCC	6 cut(s)	203, 556, 967, 1105, 2884, 2938
PstI	CTGCAG	5 cut(s)	1022, 1744, 1780, 2725, 2995
PstNI	CAGNNNCTG	3 cut(s)	632, 1118, 2961
PsuI	RGATCY	4 cut(s)	385, 937, 1006, 1645
PsyI	GACNNNGTC	1 cut(s)	1125
PvuII	CAGCTG	1 cut(s)	2996
RsaI	GTAC	7 cut(s)	834, 945, 1236, 1631, 1787, 2474, 2632
RsaNI	GTAC	7 cut(s)	833, 944, 1235, 1630, 1786, 2473, 2631
SacII	CCGCGG	1 cut(s)	792
SapI	GCTCTTC	1 cut(s)	1735
SaqAI	TTAA	9 cut(s)	270, 441, 462, 1041, 1835, 1913, 2256, 2642, 2853
Sau96I	GGNCC	6 cut(s)	203, 556, 967, 1105, 2884, 2938
SchI	GAGTC	5 cut(s)	499, 610, 661, 1097, 1715
ScrFI	CCNGG	4 cut(s)	315, 769, 1119, 2771
SduI	GDGCHC	3 cut(s)	700, 2059, 2348
SfaNI	GCATC	9 cut(s)	678, 1388, 1402, 1609, 1685, 1816, 2650, 2725, 2891
SfcI	CTRYAG	6 cut(s)	574, 1018, 1740, 1776, 2721, 2991
Sfr303I	CCGCGG	1 cut(s)	792
SfuI	TTCGAA	1 cut(s)	2531
SgrBI	CCGCGG	1 cut(s)	792
SinI	GGWCC	4 cut(s)	203, 556, 1105, 2938
SmlI	CTYRAG	6 cut(s)	899, 1010, 1151, 2058, 2588, 2701
SmoI	CTYRAG	6 cut(s)	899, 1010, 1151, 2058, 2588, 2701
SphI	GCATGC	2 cut(s)	2144, 2192
SseBI	AGGCCT	1 cut(s)	1764
SsiI	CCGC	9 cut(s)	17, 678, 789, 791, 1480, 1501, 2278, 2498, 2959
SspI	AATATT	2 cut(s)	1252, 2427
SspMI	CTAG	4 cut(s)	1476, 1656, 2361, 2652
StuI	AGGCCT	1 cut(s)	1764
StyD4I	CCNGG	4 cut(s)	313, 767, 1117, 2769
StyI	CCWWGG	1 cut(s)	2664
TaaI	ACNGT	7 cut(s)	61, 221, 439, 837, 1957, 2196, 2380
TaiI	ACGT	3 cut(s)	1514, 1941, 2340
TaqI	TCGA	4 cut(s)	63, 379, 1719, 2531
TatI	WGTACW	3 cut(s)	832, 1234, 2472
TauI	GCSGC	5 cut(s)	20, 791, 1482, 1504, 2961
TfiI	GAWTC	6 cut(s)	455, 1301, 1435, 2513, 2687, 2749
Tru1I	TTAA	9 cut(s)	270, 441, 462, 1041, 1835, 1913, 2256, 2642, 2853
Tru9I	TTAA	9 cut(s)	270, 441, 462, 1041, 1835, 1913, 2256, 2642, 2853
TscAI	CASTG	8 cut(s)	602, 804, 1150, 1293, 1389, 1879, 2199, 2482
TseFI	GTSAC	2 cut(s)	1141, 1284
Tsp45I	GTSAC	2 cut(s)	1141, 1284
TspGWI	ACGGA	1 cut(s)	2057
TspRI	CASTG	8 cut(s)	602, 804, 1150, 1293, 1389, 1879, 2199, 2482
Tth111I	GACNNNGTC	1 cut(s)	1125
VneI	GTGCAC	1 cut(s)	696
VpaK11BI	GGWCC	4 cut(s)	203, 556, 1105, 2938
VspI	ATTAAT	2 cut(s)	270, 2853
XagI	CCTNNNNNAGG	1 cut(s)	626
XapI	RAATTY	6 cut(s)	97, 1217, 2209, 2302, 2501, 2583
XceI	RCATGY	2 cut(s)	2144, 2192
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1115
XmiI	GTMKAC	2 cut(s)	1944, 2670
XmnI	GAANNNNTTC	2 cut(s)	917, 1392
XspI	CTAG	4 cut(s)	1476, 1656, 2361, 2652
Zsp2I	ATGCAT	1 cut(s)	1624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.