Rroxscaffold_6G00396010

NYN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011904
Physical Location & Seq
Forward (+)
17248279 .. 17251737
3459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00396010.1

Sequence Viewer

Length: 2112 bp
ATGCGTGGAGATGTGAACGGAGTGACGGCGAACATGGCGGAGCAGCAGTACGTGACGGCGAAGACGTCAGTGTGGTGGGACATAGAGAATTGCCAGGTGCCCAAGGTGTGCGACGTCCACGCCATCGCCCAGAATATTAGTTCGGCGCTGGTGAAGATGAACTACTGCGGCCCCGTCTCCATCTCCGCCTACGGTGACACCAATCGCATCCCCGCCTCTGTACAGCACGCGCTCTCCAGCACCGGCATCGCCCTCAATCACGTCCCAGCAGGTGTAAAAGATGCAAGTGACAAGAAGATTCTAGTTGATATGCTTTTCTGGGCAGTAGATAACCCTGCTCCTTGCAATTATCTGCTTATTTCGGGAGACAGGGACTTCTCTAATGCTCTGCACCACCTCTCGGCTGGAGGTCCCCCACTTTCGAGTGGTGAATCATCTCTGCTTGCTAATGGTAGCAGTTCCTTTAACCCAGACCCGCCGCAGCAGTCGATGCCTGAAAATCATCAGACAAACCAATCGATACCTCACTTTGACAATCAAGCTGGGGGAAATCAGAAGCCTTCTAACGGTGGAAGGGGTGGTGATCCTAAGCAGAAAGGGAAGGCTAACAGGAAAAATCAAAATCAAAATCAACCCAACATATCAAGAGCATCAAGTGTGCCGGTTGGGGTCCAAGATGACAAGAATAATGATTATCCTTACCAAACAGATCAGACACAGGCAAAGCAGTTTAAGAAAGCTCCACACGAATTCTTTGTTGCTAGTGAGAATGTTGTTTACACTAGCAGGTCTACGCCCAATTTCTTCCCTGGAAATTCTGTCCCTTCTGGAAGTAATGGAAATAGTTTTCCAGGTCAGCAAAACCAATATCCTCCTCATTTGAGGCCGAACAACCTCCATATGCCACCTAATTTTGGACTGGATAATATGTACCCTCCGAATTCTCATGGTCATGGTTTTCGACCTATTCCTCCCAGACCTGATGGCCCTCGATTTTCTTCAGCTCCACCTACAAATGTGCCTGACATGGGTAAGCTAAATATCTCTGATTACCCCAATTATGCTCAAAATCCACCCAGGTTTCCACATCGAACTGGAGAAGATTATAATAGACCAAGGTATCCTCGTGGTTCTGAATATATTCCTCCTTCATCCTCCCCCATTACAGAAAACAACATTCCCAGTAATGGTACCTGGGGAAGTCAAGGTTGTGCACCACCTCCTGAGCATGTTCAAGGCCTTATTGGCGTTATTCTACTAGCCCTGAACTCCTTGAAAGTAGAGAAAATTATGCCTACTGAAGCAAACATTACTGATTGCATCCGTTATGGTGATCCACAACACCGAAATACCGATGTAAGGAAGGCCTTGGATTATGCAATAGAGCAACATATGGTAGTGAAGCAGAACCTGGGTGTTGCACTTCCAATGTATATTGGCAAAAAGCAAAAATTATGGAAGTGTGTGAATCTTATAGGCGGTAATCTTAATCACTACTCTAAAGCTACATGGGAGAAGTTACAGAATTTTCTGAGTTCATCAGATGGACGATCGGCAATAATGGCTTCTCAATGCAAATATGAAGCAGCTACAATTTTGAAAAAAAATTGCTTGCAAGAGCTTGCTTTGGGTGAAGTACTCCAGATGTTGAATATGTCAATTGCTATGAAGAAATGGATCATTCATCATCAGTCAGGATGGCAACCAATTTCTATTACCCTTCCAGAGACTAAACCTGAAGTAGCTTCTGAATCTGGCGTAGGCAAGATTATGAAGCTGTGGACAAGTTTAAACATGTTTTTTCTCGATAGGCAAGACTATGAAGCTGTGGAAAAGTTTAAGCATGTTCTTTTTGGATCAAATGACTATGTTATGCAGACCATGGGGCTTGCTATTTTACTTAAAGAGAAGAAAGTTTGCAGAGGAACTTCAGAGACGCCGACGCATCATTTTGAAGTATGTTCATTTAAGAAAGTAAAGTCATGCGTATGTATTGGAATGGAAAGATTGGGGCTAATAGACAATGTTGTACTTTGTGGTATCAAATTTGTCTTGTGGTGGAAGTCCCTACCTAGTTTCAGAGAAGATGGTCCAAAATCCGTCGAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN OHA

Protein Analysis

703

Amino Acids

77.58

Weight (kDa)

8.72

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NYN PF01936 21 - 136 3.2e-23 NYN domain
DUF7625 PF24620 401 - 495 4.2e-45 Domain of unknown function (DUF7625)
OHA PF14418 523 - 573 5.9e-11 OST-HTH Associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011904)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62200
fragaria_vesca FvH4_1g26400 FvH4_1g26400 FvH4_1g26400
malus_domestica MD09G1292400.v1.1 MD17G1283700.v1.1
prunus_persica Prupe.3G003800_v2.0.a1
pyrus_communis pycom09g19710 pycom17g27960
rosa_chinensis RchiOBHm_Chr3g0486181
rosa_laevigata RLG00000023095
rosa_multiflora Rmu_sc0000372.1_g000001
rosa_roxburghii Rroxscaffold_6G00396010
rosa_rugosa Rorug03G0223900
rosa_samantha Rh3AG273800 Rh3BG309100 Rh3CG307300 Rh3DG303700
rosa_wichuraiana Rw3G024260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1107
AarI CACCTGC 1 cut(s) 260
AatII GACGTC 2 cut(s) 68, 117
Acc36I ACCTGC 2 cut(s) 260, 777
Acc65I GGTACC 1 cut(s) 1190
AccB1I GGYRCC 2 cut(s) 97, 1190
AccI GTMKAC 1 cut(s) 791
AccII CGCG 1 cut(s) 230
AciI CCGC 7 cut(s) 38, 168, 186, 213, 476, 479, 1479
AclWI GGATC 4 cut(s) 578, 1328, 1685, 1864
AcsI RAATTY 5 cut(s) 749, 814, 940, 1525, 2045
AcuI CTGAAG 4 cut(s) 984, 1320, 1758, 1914
AcyI GRCGYC 3 cut(s) 65, 114, 1937
AfaI GTAC 6 cut(s) 50, 222, 932, 1192, 1638, 2031
AfiI CCNNNNNNNGG 6 cut(s) 400, 566, 914, 1028, 1187, 1359
AflIII ACRYGT 1 cut(s) 1794
AgsI TTSAA 5 cut(s) 1235, 1276, 1600, 1651, 1955
AjiI CACGTC 1 cut(s) 262
AjnI CCWGG 6 cut(s) 93, 808, 850, 1076, 1193, 1410
Alw21I GWGCWC 1 cut(s) 1216
Alw26I GTCTC 4 cut(s) 181, 360, 1721, 1928
Alw44I GTGCAC 1 cut(s) 1212
AlwI GGATC 4 cut(s) 578, 1328, 1685, 1864
AlwNI CAGNNNCTG 1 cut(s) 1411
AoxI GGCC 5 cut(s) 169, 884, 985, 1237, 1365
ApaLI GTGCAC 1 cut(s) 1212
ApeKI GCWGC 3 cut(s) 43, 481, 1586
ApoI RAATTY 5 cut(s) 749, 814, 940, 1525, 2045
Asp700I GAANNNNTTC 1 cut(s) 1140
Asp718I GGTACC 1 cut(s) 1190
AspLEI GCGC 2 cut(s) 148, 232
AspS9I GGNCC 5 cut(s) 170, 410, 670, 986, 2090
AsuHPI GGTGA 6 cut(s) 163, 206, 440, 593, 1343, 1643
AvaII GGWCC 3 cut(s) 410, 670, 2090
BaeGI GKGCMC 2 cut(s) 102, 1216
BaeI ACNNNNGTAYC 2 cut(s) 1103, 1136
BanI GGYRCC 2 cut(s) 97, 1190
BarI GAAGNNNNNNTAC 2 cut(s) 146, 178
BauI CACGAG 1 cut(s) 1125
BbsI GAAGAC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 1216
BbvI GCAGC 3 cut(s) 55, 493, 1598
BccI CCATC 6 cut(s) 131, 188, 977, 1538, 1692, 2081
BceAI ACGGC 2 cut(s) 42, 72
BcgI CGANNNNNNTGC 2 cut(s) 229, 263
BciT130I CCWGG 6 cut(s) 95, 810, 852, 1078, 1195, 1412
BciVI GTATCC 1 cut(s) 1131
BcoDI GTCTC 4 cut(s) 181, 360, 1721, 1928
BfaI CTAG 5 cut(s) 302, 762, 783, 1259, 2073
BfoI RGCGCY 1 cut(s) 149
BfuAI ACCTGC 2 cut(s) 260, 777
BfuI GTATCC 1 cut(s) 1131
BglI GCCNNNNNGGC 1 cut(s) 1245
BisI GCNGC 5 cut(s) 44, 169, 479, 482, 1587
BlsI GCNGC 5 cut(s) 45, 170, 480, 483, 1588
BmcAI AGTACT 1 cut(s) 1638
Bme1390I CCNGG 6 cut(s) 95, 810, 852, 1078, 1195, 1412
Bme18I GGWCC 3 cut(s) 410, 670, 2090
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 5 cut(s) 170, 410, 670, 986, 2090
BmiI GGNNCC 5 cut(s) 99, 172, 412, 671, 1192
BmrFI CCNGG 6 cut(s) 95, 810, 852, 1078, 1195, 1412
BmrI ACTGGG 1 cut(s) 1176
BmsI GCATC 7 cut(s) 216, 255, 271, 480, 659, 1329, 1954
BmuI ACTGGG 1 cut(s) 1176
BpiI GAAGAC 1 cut(s) 68
BpmI CTGGAG 4 cut(s) 220, 426, 1116, 1625
Bpu10I CCTNAGC 2 cut(s) 588, 1224
Bsa29I ATCGAT 1 cut(s) 518
BsaAI YACGTR 1 cut(s) 52
BsaHI GRCGYC 3 cut(s) 65, 114, 1937
BsaJI CCNNGG 8 cut(s) 102, 808, 1076, 1115, 1194, 1368, 1411, 1881
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 218, 248
Bsc4I CCNNNNNNNGG 6 cut(s) 400, 566, 914, 1028, 1187, 1359
Bse118I RCCGGY 2 cut(s) 242, 661
Bse1I ACTGG 3 cut(s) 924, 1099, 1182
BseBI CCWGG 6 cut(s) 95, 810, 852, 1078, 1195, 1412
BseCI ATCGAT 1 cut(s) 518
BseDI CCNNGG 8 cut(s) 102, 808, 1076, 1115, 1194, 1368, 1411, 1881
BseGI GGATG 4 cut(s) 207, 1151, 1320, 1703
BseLI CCNNNNNNNGG 6 cut(s) 400, 566, 914, 1028, 1187, 1359
BseMII CTCAG 2 cut(s) 1215, 1523
BseNI ACTGG 3 cut(s) 924, 1099, 1182
BseRI GAGGAG 1 cut(s) 864
BseSI GKGCMC 2 cut(s) 102, 1216
BseXI GCAGC 3 cut(s) 55, 493, 1598
BseYI CCCAGC 2 cut(s) 265, 542
BsgI GTGCAG 1 cut(s) 374
Bsh1236I CGCG 1 cut(s) 230
Bsh1285I CGRYCG 1 cut(s) 1553
BshFI GGCC 5 cut(s) 171, 886, 987, 1239, 1367
BshNI GGYRCC 2 cut(s) 97, 1190
BshVI ATCGAT 1 cut(s) 518
BsiEI CGRYCG 1 cut(s) 1553
BsiHKAI GWGCWC 1 cut(s) 1216
BsiSI CCGG 2 cut(s) 243, 662
BslFI GGGAC 6 cut(s) 92, 248, 386, 396, 806, 2050
BslI CCNNNNNNNGG 6 cut(s) 400, 566, 914, 1028, 1187, 1359
BsmAI GTCTC 4 cut(s) 181, 360, 1721, 1928
BsmBI CGTCTC 2 cut(s) 181, 1928
BsmFI GGGAC 6 cut(s) 92, 248, 386, 396, 806, 2050
BsnI GGCC 5 cut(s) 171, 886, 987, 1239, 1367
Bsp1286I GDGCHC 2 cut(s) 102, 1216
Bsp1407I TGTACA 1 cut(s) 220
Bsp143I GATC 6 cut(s) 583, 709, 1333, 1550, 1677, 1856
Bsp19I CCATGG 1 cut(s) 1881
BspACI CCGC 7 cut(s) 38, 168, 186, 213, 476, 479, 1479
BspANI GGCC 5 cut(s) 171, 886, 987, 1239, 1367
BspCNI CTCAG 2 cut(s) 1216, 1524
BspDI ATCGAT 1 cut(s) 518
BspFNI CGCG 1 cut(s) 230
BspLI GGNNCC 5 cut(s) 99, 172, 412, 671, 1192
BspMI ACCTGC 2 cut(s) 260, 777
BspPI GGATC 4 cut(s) 578, 1328, 1685, 1864
BspT107I GGYRCC 2 cut(s) 97, 1190
BsrFI RCCGGY 2 cut(s) 242, 661
BsrGI TGTACA 1 cut(s) 220
BsrI ACTGG 3 cut(s) 924, 1099, 1182
BssAI RCCGGY 2 cut(s) 242, 661
BssECI CCNNGG 8 cut(s) 102, 808, 1076, 1115, 1194, 1368, 1411, 1881
BssMI GATC 6 cut(s) 583, 709, 1333, 1550, 1677, 1856
BssNI GRCGYC 3 cut(s) 65, 114, 1937
BssSI CACGAG 1 cut(s) 1125
BssT1I CCWWGG 4 cut(s) 102, 1115, 1368, 1881
Bst2BI CACGAG 1 cut(s) 1125
Bst2UI CCWGG 6 cut(s) 95, 810, 852, 1078, 1195, 1412
Bst4CI ACNGT 2 cut(s) 194, 569
BstACI GRCGYC 3 cut(s) 65, 114, 1937
BstAPI GCANNNNNTGC 1 cut(s) 490
BstAUI TGTACA 1 cut(s) 220
BstBAI YACGTR 1 cut(s) 52
BstC8I GCNNGC 5 cut(s) 228, 444, 1613, 1623, 1890
BstDEI CTNAG 3 cut(s) 588, 1224, 1532
BstDSI CCRYGG 1 cut(s) 1881
BstF5I GGATG 4 cut(s) 207, 1151, 1320, 1703
BstFNI CGCG 1 cut(s) 230
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 2 cut(s) 148, 232
BstKTI GATC 6 cut(s) 586, 712, 1336, 1553, 1680, 1859
BstMAI GTCTC 4 cut(s) 181, 360, 1721, 1928
BstMBI GATC 6 cut(s) 583, 709, 1333, 1550, 1677, 1856
BstMCI CGRYCG 1 cut(s) 1553
BstMWI GCNNNNNNNGC 4 cut(s) 35, 490, 1245, 1562
BstNI CCWGG 6 cut(s) 95, 810, 852, 1078, 1195, 1412
BstNSI RCATGY 3 cut(s) 1232, 1798, 1847
BstSCI CCNGG 6 cut(s) 93, 808, 850, 1076, 1193, 1410
BstSLI GKGCMC 2 cut(s) 102, 1216
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 3 cut(s) 55, 493, 1598
BstV2I GAAGAC 1 cut(s) 68
Bsu15I ATCGAT 1 cut(s) 518
BsuI GTATCC 1 cut(s) 1131
BsuRI GGCC 5 cut(s) 171, 886, 987, 1239, 1367
BsuTUI ATCGAT 1 cut(s) 518
BtgI CCRYGG 1 cut(s) 1881
BtgZI GCGATG 2 cut(s) 109, 232
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 4 cut(s) 207, 1151, 1320, 1703
BtsIMutI CAGTG 1 cut(s) 75
BveI ACCTGC 2 cut(s) 260, 777
Cac8I GCNNGC 5 cut(s) 228, 444, 1613, 1623, 1890
CaiI CAGNNNCTG 1 cut(s) 1411
CfoI GCGC 2 cut(s) 148, 232
Cfr10I RCCGGY 2 cut(s) 242, 661
Cfr13I GGNCC 5 cut(s) 170, 410, 670, 986, 2090
ClaI ATCGAT 1 cut(s) 518
CseI GACGC 2 cut(s) 1945, 1951
Csp6I GTAC 6 cut(s) 49, 221, 931, 1191, 1637, 2030
CviQI GTAC 6 cut(s) 49, 221, 931, 1191, 1637, 2030
DdeI CTNAG 3 cut(s) 588, 1224, 1532
DpnI GATC 6 cut(s) 585, 711, 1335, 1552, 1679, 1858
DpnII GATC 6 cut(s) 583, 709, 1333, 1550, 1677, 1856
DraI TTTAAA 1 cut(s) 1791
EciI GGCGGA 2 cut(s) 53, 175
Eco130I CCWWGG 4 cut(s) 102, 1115, 1368, 1881
Eco147I AGGCCT 2 cut(s) 1239, 1367
Eco47I GGWCC 3 cut(s) 410, 670, 2090
Eco57I CTGAAG 4 cut(s) 984, 1320, 1758, 1914
EcoO109I RGGNCCY 1 cut(s) 410
EcoRI GAATTC 2 cut(s) 749, 940
EcoRII CCWGG 6 cut(s) 93, 808, 850, 1076, 1193, 1410
EcoT14I CCWWGG 4 cut(s) 102, 1115, 1368, 1881
ErhI CCWWGG 4 cut(s) 102, 1115, 1368, 1881
Esp3I CGTCTC 2 cut(s) 181, 1928
FaqI GGGAC 6 cut(s) 92, 248, 386, 396, 806, 2050
FauI CCCGC 2 cut(s) 220, 483
FauNDI CATATG 2 cut(s) 900, 1392
FblI GTMKAC 1 cut(s) 791
Fnu4HI GCNGC 5 cut(s) 44, 169, 479, 482, 1587
FokI GGATG 4 cut(s) 194, 1138, 1307, 1710
Fsp4HI GCNGC 5 cut(s) 44, 169, 479, 482, 1587
FspBI CTAG 5 cut(s) 302, 762, 783, 1259, 2073
GlaI GCGC 2 cut(s) 147, 231
GluI GCNGC 5 cut(s) 44, 169, 479, 482, 1587
GsaI CCCAGC 2 cut(s) 269, 546
GsuI CTGGAG 4 cut(s) 220, 426, 1116, 1625
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 5 cut(s) 171, 886, 987, 1239, 1367
HapII CCGG 2 cut(s) 243, 662
HgaI GACGC 2 cut(s) 1945, 1951
HhaI GCGC 2 cut(s) 148, 232
Hin1I GRCGYC 3 cut(s) 65, 114, 1937
Hin6I GCGC 2 cut(s) 146, 230
HinP1I GCGC 2 cut(s) 146, 230
HinfI GANTC 4 cut(s) 298, 431, 1468, 1751
HpaII CCGG 2 cut(s) 243, 662
HphI GGTGA 6 cut(s) 163, 206, 440, 593, 1343, 1643
Hpy166II GTNNAC 6 cut(s) 16, 118, 778, 792, 1214, 1782
Hpy188III TCNNGA 8 cut(s) 363, 645, 828, 1223, 1642, 1695, 1724, 1805
Hpy8I GTNNAC 6 cut(s) 16, 118, 778, 792, 1214, 1782
Hpy99I CGWCG 3 cut(s) 116, 1945, 2105
HpyAV CCTTC 8 cut(s) 567, 570, 595, 834, 1158, 1357, 1730, 2099
HpyCH4III ACNGT 2 cut(s) 194, 569
HpyCH4IV ACGT 4 cut(s) 51, 65, 114, 261
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 490, 1245, 1562
HpyF3I CTNAG 3 cut(s) 588, 1224, 1532
HpySE526I ACGT 4 cut(s) 51, 65, 114, 261
Hsp92I GRCGYC 3 cut(s) 65, 114, 1937
HspAI GCGC 2 cut(s) 146, 230
KpnI GGTACC 1 cut(s) 1194
Kzo9I GATC 6 cut(s) 583, 709, 1333, 1550, 1677, 1856
LmnI GCTCC 4 cut(s) 40, 343, 745, 1009
Lsp1109I GCAGC 3 cut(s) 55, 493, 1598
LweI GCATC 7 cut(s) 216, 255, 271, 480, 659, 1329, 1954
MaeI CTAG 5 cut(s) 302, 762, 783, 1259, 2073
MaeII ACGT 4 cut(s) 51, 65, 114, 261
MaeIII GTNAC 5 cut(s) 22, 52, 194, 287, 1518
MalI GATC 6 cut(s) 585, 711, 1335, 1552, 1679, 1858
MboI GATC 6 cut(s) 583, 709, 1333, 1550, 1677, 1856
MboII GAAGA 9 cut(s) 73, 166, 307, 796, 990, 1112, 1681, 1921, 2096
MfeI CAATTG 1 cut(s) 1659
MhlI GDGCHC 2 cut(s) 102, 1216
MroXI GAANNNNTTC 1 cut(s) 1140
MseI TTAA 7 cut(s) 465, 732, 1488, 1790, 1839, 1902, 1968
MslI CAYNNNNRTG 2 cut(s) 951, 1987
MspI CCGG 2 cut(s) 243, 662
MspR9I CCNGG 6 cut(s) 95, 810, 852, 1078, 1195, 1412
MssI GTTTAAAC 1 cut(s) 1791
MunI CAATTG 1 cut(s) 1659
MvaI CCWGG 6 cut(s) 95, 810, 852, 1078, 1195, 1412
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 4 cut(s) 35, 490, 1245, 1562
NcoI CCATGG 1 cut(s) 1881
NdeI CATATG 2 cut(s) 900, 1392
NdeII GATC 6 cut(s) 583, 709, 1333, 1550, 1677, 1856
NlaIV GGNNCC 5 cut(s) 99, 172, 412, 671, 1192
NmeAIII GCCGAG 1 cut(s) 380
NmuCI GTSAC 4 cut(s) 22, 52, 194, 287
NspI RCATGY 3 cut(s) 1232, 1798, 1847
PaqCI CACCTGC 1 cut(s) 260
PceI AGGCCT 2 cut(s) 1239, 1367
PciI ACATGT 1 cut(s) 1794
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 1140
PfeI GAWTC 4 cut(s) 298, 431, 1468, 1751
PkrI GCNGC 5 cut(s) 45, 170, 480, 483, 1588
Ple19I CGATCG 1 cut(s) 1553
PmeI GTTTAAAC 1 cut(s) 1791
Ppu21I YACGTR 1 cut(s) 52
PpuMI RGGWCCY 1 cut(s) 410
PscI ACATGT 1 cut(s) 1794
PsiI TTATAA 1 cut(s) 1107
Psp5II RGGWCCY 1 cut(s) 410
Psp6I CCWGG 6 cut(s) 93, 808, 850, 1076, 1193, 1410
PspFI CCCAGC 2 cut(s) 265, 542
PspGI CCWGG 6 cut(s) 93, 808, 850, 1076, 1193, 1410
PspN4I GGNNCC 5 cut(s) 99, 172, 412, 671, 1192
PspPI GGNCC 5 cut(s) 170, 410, 670, 986, 2090
PspPPI RGGWCCY 1 cut(s) 410
PstNI CAGNNNCTG 1 cut(s) 1411
PvuI CGATCG 1 cut(s) 1553
RsaI GTAC 6 cut(s) 50, 222, 932, 1192, 1638, 2031
RsaNI GTAC 6 cut(s) 49, 221, 931, 1191, 1637, 2030
RseI CAYNNNNRTG 2 cut(s) 951, 1987
SaqAI TTAA 7 cut(s) 465, 732, 1488, 1790, 1839, 1902, 1968
SatI GCNGC 5 cut(s) 44, 169, 479, 482, 1587
Sau3AI GATC 6 cut(s) 583, 709, 1333, 1550, 1677, 1856
Sau96I GGNCC 5 cut(s) 170, 410, 670, 986, 2090
ScaI AGTACT 1 cut(s) 1638
ScrFI CCNGG 6 cut(s) 95, 810, 852, 1078, 1195, 1412
SduI GDGCHC 2 cut(s) 102, 1216
SfaNI GCATC 7 cut(s) 216, 255, 271, 480, 659, 1329, 1954
SinI GGWCC 3 cut(s) 410, 670, 2090
SmiMI CAYNNNNRTG 2 cut(s) 951, 1987
SseBI AGGCCT 2 cut(s) 1239, 1367
SsiI CCGC 7 cut(s) 38, 168, 186, 213, 476, 479, 1479
SspI AATATT 1 cut(s) 136
SspMI CTAG 5 cut(s) 302, 762, 783, 1259, 2073
StuI AGGCCT 2 cut(s) 1239, 1367
StyD4I CCNGG 6 cut(s) 93, 808, 850, 1076, 1193, 1410
StyI CCWWGG 4 cut(s) 102, 1115, 1368, 1881
TaaI ACNGT 2 cut(s) 194, 569
TaiI ACGT 4 cut(s) 54, 68, 117, 264
TaqI TCGA 8 cut(s) 422, 488, 518, 961, 991, 1090, 1806, 2103
TatI WGTACW 3 cut(s) 220, 1636, 2029
TauI GCSGC 2 cut(s) 171, 481
TfiI GAWTC 4 cut(s) 298, 431, 1468, 1751
Tru1I TTAA 7 cut(s) 465, 732, 1488, 1790, 1839, 1902, 1968
Tru9I TTAA 7 cut(s) 465, 732, 1488, 1790, 1839, 1902, 1968
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 4 cut(s) 22, 52, 194, 287
TseI GCWGC 3 cut(s) 43, 481, 1586
Tsp45I GTSAC 4 cut(s) 22, 52, 194, 287
TspDTI ATGAA 9 cut(s) 173, 1140, 1527, 1596, 1673, 1682, 1787, 1836, 1953
TspGWI ACGGA 3 cut(s) 33, 1313, 2089
TspRI CASTG 1 cut(s) 75
VneI GTGCAC 1 cut(s) 1212
VpaK11BI GGWCC 3 cut(s) 410, 670, 2090
XapI RAATTY 5 cut(s) 749, 814, 940, 1525, 2045
XceI RCATGY 3 cut(s) 1232, 1798, 1847
XcmI CCANNNNNNNNNTGG 1 cut(s) 401
XmiI GTMKAC 1 cut(s) 791
XmnI GAANNNNTTC 1 cut(s) 1140
XspI CTAG 5 cut(s) 302, 762, 783, 1259, 2073
ZraI GACGTC 2 cut(s) 66, 115
ZrmI AGTACT 1 cut(s) 1638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.