Rw3G024260

NYN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0011904
Physical Location & Seq
Reverse (-)
31150409 .. 31153998
3590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G024260.1

Sequence Viewer

Length: 1962 bp
ATGCGTGGAGATGTGAACGGAGTGACGGCGAACATGGCGGAGCAGCAGTACGTGACGGCGAAGACGTCAGTGTGGTGGGACATAGAGAATTGCCAGGTGCCCAAGGTGTGCGACGTCCACGCCATCGCCCAGAATATTAGTTCGGCGCTGGTGAAGATGAACTACTGCGGCCCCGTCTCCATCTCCGCCTACGGCGACACCAATCGCATCCCCGCCTCTGTACAGCACGCGCTCTCCAGCACCGGCATCGCCCTCAATCACGTCCCAGCAGGTGTAAAAGATGCAAGTGACAAGAAGATTCTAGTTGATATGCTTTTCTGGGCAGTAGATAACCCTGCTCCTTGCAATTATCTGCTTATTTCCGGAGACAGGGACTTCTCTAATGCTCTGCACCAGTTACGCATGAGAAGATATAATATCCTTCTCGCACAGCCACAAAAAGCATCCGCACCCCTCATTGCTGCAGCAAAGAGTGTGTGGCTTTGGACAAGCCTCTCGGCTGGAGGCCCCCCACTTACGAGTGGTGAATCATCTCTGCTTGCTAATGGTAGCAATTCCTTTAACCCAGACCCGCCGCAGCAGTCGATGCTTGAAAATCATCAGACAAACCAATCCATACCTCACTTTGACAATCAAGCTGGGGGAAATCAGAAGCCTTCTAACGGTGGAAGGGGTGGTGATCCTAAGCATAAAGGGAAGGTTAACAGGAAAAATCAAAATCAACCCAACATATCAAGGGCCTCAAGTGTGCCAGTTGGGGTCCAAGATGACAAGAATAATGATTATCCTTACCAAACAGATCAGACGCAGGCAAAGCAGTTTAAGAAAGCTCCACACGAATTCTTTGGTGCTAGTGAGAATCTTGTTTCCACTAGCAGGTCGACGCCCAATTTCTTCCCTGGAAATTCTGTCCCTTCTGGAAGTAATGGAAACAGTTTTCTAGGTCAGCAAAACCAATATCCTCCTCATTTGATGCCGAACAACCTCCATATGCCACCTAATTTTGGACTGGATAATATGCACCCTCTGAATTCTCATAATCATGGTTTTCGACCTATTCCTCCCAGACCTGATGGCCCTCGATTTTCTTCAGCTCCACCTACAAATGTGCCTGACATGGGTAAGCTAAATATCTCTGATTACCCCAATTATGCGCAAAACCCACCCAGGTTTCCACATCGAACTGGAGAAGAGTATAATAGACCAAGGTCTAGTGAGTCAAAGAATTTTAGCAGCTCTAATGGACCCCAAAAAGGCCATAATATGCAGGGGGGTGGCCAGCCGTTTCATCATGATTCCATGAACAACAGGTATCCTCGTGGTTCTGAATATCTTCCTCCTTCATCCTCCCCCATTACAGCAAACGACATTCCCAGTAATGGTATCTGGGGAAGTCAAGGTTGTGCACCACCTTCTGAACATGTTCAAGGCCTTATTGGCGTTATTCTACTAGCCCTGAACTCCTTGAAAGTAGAGAAAATTATGCCTACTGAAGCAAACATTACTGATTGCATCCGTTATGGTGATCCAAAACACCGAAATACCGATGTAAGGAAGGCCTTGGATTATGCAATAGAGCAACATATGGTAGTGAAGCAGAACCTGGGTGTTGCACTTCCAATGTATATTGGGAAAAAGCAAAAATTATGGAAGTGTGTGAATCTTATAGGCGGTAATCTTAATCACTACTCTAAAGCTACATGGGAGAAGTTACAGAATTTTCTGAGTTCATCAGATGGACGATCGGCAATAATGGCTTCTCAATGCAAATATGAAGCAGCTACAATTTTGAAAAAAAATTGCTTGCAAGAGCTTGCTTTGGGTGAAGTACTCCAGATCTTGAATATGTCAATTGCTATGAAGAAATGGATCATTCATCATCAGTCAGGATGGCAACCAATTTCTATTACCCTTCCAGAGACTAAACCTGAAGTAGCTTCTGAATCTGGTACTTGGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN OHA

Protein Analysis

653

Amino Acids

71.59

Weight (kDa)

9.03

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NYN PF01936 21 - 157 4.9e-29 NYN domain
DUF7625 PF24620 465 - 559 4.8e-46 Domain of unknown function (DUF7625)
OHA PF14418 587 - 637 5.8e-11 OST-HTH Associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011904)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62200
fragaria_vesca FvH4_1g26400 FvH4_1g26400 FvH4_1g26400
malus_domestica MD09G1292400.v1.1 MD17G1283700.v1.1
prunus_persica Prupe.3G003800_v2.0.a1
pyrus_communis pycom09g19710 pycom17g27960
rosa_chinensis RchiOBHm_Chr3g0486181
rosa_laevigata RLG00000023095
rosa_multiflora Rmu_sc0000372.1_g000001
rosa_roxburghii Rroxscaffold_6G00396010
rosa_rugosa Rorug03G0223900
rosa_samantha Rh3AG273800 Rh3BG309100 Rh3CG307300 Rh3DG303700
rosa_wichuraiana Rw3G024260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 260
AatII GACGTC 2 cut(s) 68, 117
Acc16I TGCGCA 1 cut(s) 1155
Acc36I ACCTGC 2 cut(s) 260, 867
AccB1I GGYRCC 1 cut(s) 97
AccI GTMKAC 1 cut(s) 881
AccII CGCG 1 cut(s) 230
AccIII TCCGGA 1 cut(s) 362
AciI CCGC 8 cut(s) 38, 168, 186, 213, 447, 572, 575, 1671
AclWI GGATC 3 cut(s) 674, 1520, 1877
AcoI YGGCCR 1 cut(s) 1276
AcsI RAATTY 5 cut(s) 839, 904, 1030, 1225, 1717
AcuI CTGAAG 3 cut(s) 1074, 1512, 1950
AcyI GRCGYC 3 cut(s) 65, 114, 884
AfaI GTAC 4 cut(s) 50, 222, 1830, 1951
AfiI CCNNNNNNNGG 8 cut(s) 369, 662, 876, 1004, 1118, 1253, 1379, 1551
AflIII ACRYGT 1 cut(s) 1420
AgsI TTSAA 5 cut(s) 593, 1427, 1468, 1792, 1843
AjiI CACGTC 1 cut(s) 262
AjnI CCWGG 4 cut(s) 93, 898, 1166, 1602
AluBI AGCT 9 cut(s) 638, 830, 1094, 1126, 1236, 1697, 1781, 1813, 1937
AluI AGCT 9 cut(s) 638, 830, 1094, 1126, 1236, 1697, 1781, 1813, 1937
Alw21I GWGCWC 1 cut(s) 1408
Alw26I GTCTC 3 cut(s) 181, 360, 1913
Alw44I GTGCAC 1 cut(s) 1404
AlwI GGATC 3 cut(s) 674, 1520, 1877
AlwNI CAGNNNCTG 1 cut(s) 1603
Aor13HI TCCGGA 1 cut(s) 362
AoxI GGCC 8 cut(s) 169, 505, 738, 1075, 1255, 1276, 1429, 1557
ApaLI GTGCAC 1 cut(s) 1404
ApeKI GCWGC 6 cut(s) 43, 461, 464, 577, 1233, 1778
ApoI RAATTY 5 cut(s) 839, 904, 1030, 1225, 1717
Asp700I GAANNNNTTC 2 cut(s) 1332, 1422
AspLEI GCGC 3 cut(s) 148, 232, 1156
AspS9I GGNCC 6 cut(s) 170, 506, 738, 760, 1076, 1244
AsuHPI GGTGA 5 cut(s) 163, 536, 689, 1535, 1835
AvaII GGWCC 2 cut(s) 760, 1244
BaeGI GKGCMC 2 cut(s) 102, 1408
BaeI ACNNNNGTAYC 1 cut(s) 1941
BalI TGGCCA 1 cut(s) 1278
BanI GGYRCC 1 cut(s) 97
BarI GAAGNNNNNNTAC 2 cut(s) 146, 178
BauI CACGAG 1 cut(s) 1317
BbsI GAAGAC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 1408
BbvI GCAGC 6 cut(s) 55, 448, 476, 589, 1245, 1790
BccI CCATC 5 cut(s) 131, 188, 1067, 1730, 1884
BceAI ACGGC 4 cut(s) 42, 72, 208, 1267
BcgI CGANNNNNNTGC 2 cut(s) 229, 263
BciT130I CCWGG 4 cut(s) 95, 900, 1168, 1604
BciVI GTATCC 1 cut(s) 1323
BcoDI GTCTC 3 cut(s) 181, 360, 1913
BfaI CTAG 6 cut(s) 302, 852, 873, 941, 1212, 1451
BfmI CTRYAG 1 cut(s) 462
BfoI RGCGCY 1 cut(s) 149
BfuAI ACCTGC 2 cut(s) 260, 867
BfuI GTATCC 1 cut(s) 1323
BglI GCCNNNNNGGC 1 cut(s) 1437
BglII AGATCT 1 cut(s) 1836
BisI GCNGC 8 cut(s) 44, 169, 462, 465, 575, 578, 1234, 1779
BlsI GCNGC 8 cut(s) 45, 170, 463, 466, 576, 579, 1235, 1780
BmcAI AGTACT 1 cut(s) 1830
Bme1390I CCNGG 4 cut(s) 95, 900, 1168, 1604
Bme18I GGWCC 2 cut(s) 760, 1244
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 6 cut(s) 170, 506, 738, 760, 1076, 1244
BmiI GGNNCC 5 cut(s) 99, 172, 508, 761, 1246
BmrFI CCNGG 4 cut(s) 95, 900, 1168, 1604
BmrI ACTGGG 1 cut(s) 1368
BmsI GCATC 7 cut(s) 216, 255, 271, 452, 576, 963, 1521
BmuI ACTGGG 1 cut(s) 1368
BoxI GACNNNNGTC 1 cut(s) 1207
BpiI GAAGAC 1 cut(s) 68
BpmI CTGGAG 4 cut(s) 220, 522, 1206, 1817
Bpu10I CCTNAGC 1 cut(s) 684
BpuEI CTTGAG 1 cut(s) 727
BsaAI YACGTR 1 cut(s) 52
BsaHI GRCGYC 3 cut(s) 65, 114, 884
BsaJI CCNNGG 6 cut(s) 102, 898, 1166, 1205, 1560, 1603
BsaWI WCCGGW 1 cut(s) 362
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 218, 248
Bsc4I CCNNNNNNNGG 8 cut(s) 369, 662, 876, 1004, 1118, 1253, 1379, 1551
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 5 cut(s) 394, 752, 1014, 1189, 1374
Bse3DI GCAATG 1 cut(s) 456
BseAI TCCGGA 1 cut(s) 362
BseBI CCWGG 4 cut(s) 95, 900, 1168, 1604
BseDI CCNNGG 6 cut(s) 102, 898, 1166, 1205, 1560, 1603
BseGI GGATG 5 cut(s) 207, 443, 1343, 1512, 1895
BseLI CCNNNNNNNGG 8 cut(s) 369, 662, 876, 1004, 1118, 1253, 1379, 1551
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 1 cut(s) 1715
BseNI ACTGG 5 cut(s) 394, 752, 1014, 1189, 1374
BseRI GAGGAG 1 cut(s) 954
BseSI GKGCMC 2 cut(s) 102, 1408
BseXI GCAGC 6 cut(s) 55, 448, 476, 589, 1245, 1790
BseYI CCCAGC 2 cut(s) 265, 638
BsgI GTGCAG 1 cut(s) 374
Bsh1236I CGCG 1 cut(s) 230
Bsh1285I CGRYCG 1 cut(s) 1745
BshFI GGCC 8 cut(s) 171, 507, 740, 1077, 1257, 1278, 1431, 1559
BshNI GGYRCC 1 cut(s) 97
BsiEI CGRYCG 1 cut(s) 1745
BsiHKAI GWGCWC 1 cut(s) 1408
BsiSI CCGG 2 cut(s) 243, 363
BslFI GGGAC 4 cut(s) 92, 248, 386, 896
BslI CCNNNNNNNGG 8 cut(s) 369, 662, 876, 1004, 1118, 1253, 1379, 1551
BsmAI GTCTC 3 cut(s) 181, 360, 1913
BsmBI CGTCTC 1 cut(s) 181
BsmFI GGGAC 4 cut(s) 92, 248, 386, 896
BsnI GGCC 8 cut(s) 171, 507, 740, 1077, 1257, 1278, 1431, 1559
Bsp1286I GDGCHC 2 cut(s) 102, 1408
Bsp13I TCCGGA 1 cut(s) 362
Bsp1407I TGTACA 1 cut(s) 220
Bsp143I GATC 6 cut(s) 679, 799, 1525, 1742, 1836, 1869
BspACI CCGC 8 cut(s) 38, 168, 186, 213, 447, 572, 575, 1671
BspANI GGCC 8 cut(s) 171, 507, 740, 1077, 1257, 1278, 1431, 1559
BspCNI CTCAG 1 cut(s) 1716
BspEI TCCGGA 1 cut(s) 362
BspFNI CGCG 1 cut(s) 230
BspHI TCATGA 1 cut(s) 1291
BspLI GGNNCC 5 cut(s) 99, 172, 508, 761, 1246
BspMAI CTGCAG 1 cut(s) 466
BspMI ACCTGC 2 cut(s) 260, 867
BspPI GGATC 3 cut(s) 674, 1520, 1877
BspT107I GGYRCC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 242
BsrGI TGTACA 1 cut(s) 220
BsrI ACTGG 5 cut(s) 394, 752, 1014, 1189, 1374
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 6 cut(s) 102, 898, 1166, 1205, 1560, 1603
BssMI GATC 6 cut(s) 679, 799, 1525, 1742, 1836, 1869
BssNI GRCGYC 3 cut(s) 65, 114, 884
BssSI CACGAG 1 cut(s) 1317
BssT1I CCWWGG 3 cut(s) 102, 1205, 1560
Bst2BI CACGAG 1 cut(s) 1317
Bst2UI CCWGG 4 cut(s) 95, 900, 1168, 1604
Bst4CI ACNGT 2 cut(s) 665, 935
Bst6I CTCTTC 1 cut(s) 1185
BstACI GRCGYC 3 cut(s) 65, 114, 884
BstAPI GCANNNNNTGC 1 cut(s) 586
BstAUI TGTACA 1 cut(s) 220
BstBAI YACGTR 1 cut(s) 52
BstC8I GCNNGC 6 cut(s) 228, 540, 810, 1280, 1805, 1815
BstDEI CTNAG 2 cut(s) 684, 1724
BstF5I GGATG 5 cut(s) 207, 443, 1343, 1512, 1895
BstFNI CGCG 1 cut(s) 230
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 3 cut(s) 148, 232, 1156
BstKTI GATC 6 cut(s) 682, 802, 1528, 1745, 1839, 1872
BstMAI GTCTC 3 cut(s) 181, 360, 1913
BstMBI GATC 6 cut(s) 679, 799, 1525, 1742, 1836, 1869
BstMCI CGRYCG 1 cut(s) 1745
BstMWI GCNNNNNNNGC 5 cut(s) 35, 586, 814, 1437, 1754
BstNI CCWGG 4 cut(s) 95, 900, 1168, 1604
BstNSI RCATGY 1 cut(s) 1424
BstPAI GACNNNNGTC 1 cut(s) 1207
BstSCI CCNGG 4 cut(s) 93, 898, 1166, 1602
BstSFI CTRYAG 1 cut(s) 462
BstSLI GKGCMC 2 cut(s) 102, 1408
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 6 cut(s) 55, 448, 476, 589, 1245, 1790
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 1836
BstYI RGATCY 1 cut(s) 1836
BsuI GTATCC 1 cut(s) 1323
BsuRI GGCC 8 cut(s) 171, 507, 740, 1077, 1257, 1278, 1431, 1559
BtgZI GCGATG 2 cut(s) 109, 232
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 5 cut(s) 207, 443, 1343, 1512, 1895
BtsIMutI CAGTG 1 cut(s) 75
BveI ACCTGC 2 cut(s) 260, 867
Cac8I GCNNGC 6 cut(s) 228, 540, 810, 1280, 1805, 1815
CaiI CAGNNNCTG 1 cut(s) 1603
CciI TCATGA 1 cut(s) 1291
CfoI GCGC 3 cut(s) 148, 232, 1156
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 6 cut(s) 170, 506, 738, 760, 1076, 1244
CseI GACGC 2 cut(s) 814, 892
Csp6I GTAC 4 cut(s) 49, 221, 1829, 1950
CviAII CATG 8 cut(s) 34, 403, 1043, 1117, 1292, 1300, 1421, 1701
CviQI GTAC 4 cut(s) 49, 221, 1829, 1950
DdeI CTNAG 2 cut(s) 684, 1724
DpnI GATC 6 cut(s) 681, 801, 1527, 1744, 1838, 1871
DpnII GATC 6 cut(s) 679, 799, 1525, 1742, 1836, 1869
EaeI YGGCCR 1 cut(s) 1276
Eam1104I CTCTTC 1 cut(s) 1185
EarI CTCTTC 1 cut(s) 1185
EciI GGCGGA 2 cut(s) 53, 175
Eco130I CCWWGG 3 cut(s) 102, 1205, 1560
Eco147I AGGCCT 2 cut(s) 1431, 1559
Eco47I GGWCC 2 cut(s) 760, 1244
Eco57I CTGAAG 3 cut(s) 1074, 1512, 1950
EcoO109I RGGNCCY 2 cut(s) 506, 738
EcoRI GAATTC 2 cut(s) 839, 1030
EcoRII CCWGG 4 cut(s) 93, 898, 1166, 1602
EcoT14I CCWWGG 3 cut(s) 102, 1205, 1560
ErhI CCWWGG 3 cut(s) 102, 1205, 1560
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 8 cut(s) 37, 406, 1046, 1120, 1295, 1303, 1424, 1704
FaqI GGGAC 4 cut(s) 92, 248, 386, 896
FatI CATG 8 cut(s) 33, 402, 1042, 1116, 1291, 1299, 1420, 1700
FauI CCCGC 2 cut(s) 220, 579
FauNDI CATATG 2 cut(s) 990, 1584
FblI GTMKAC 1 cut(s) 881
Fnu4HI GCNGC 8 cut(s) 44, 169, 462, 465, 575, 578, 1234, 1779
FokI GGATG 5 cut(s) 194, 430, 1330, 1499, 1902
Fsp4HI GCNGC 8 cut(s) 44, 169, 462, 465, 575, 578, 1234, 1779
FspBI CTAG 6 cut(s) 302, 852, 873, 941, 1212, 1451
FspI TGCGCA 1 cut(s) 1155
GlaI GCGC 3 cut(s) 147, 231, 1155
GluI GCNGC 8 cut(s) 44, 169, 462, 465, 575, 578, 1234, 1779
GsaI CCCAGC 2 cut(s) 269, 642
GsuI CTGGAG 4 cut(s) 220, 522, 1206, 1817
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 8 cut(s) 171, 507, 740, 1077, 1257, 1278, 1431, 1559
HapII CCGG 2 cut(s) 243, 363
HgaI GACGC 2 cut(s) 814, 892
HhaI GCGC 3 cut(s) 148, 232, 1156
Hin1I GRCGYC 3 cut(s) 65, 114, 884
Hin1II CATG 8 cut(s) 37, 406, 1046, 1120, 1295, 1303, 1424, 1704
Hin6I GCGC 3 cut(s) 146, 230, 1154
HinP1I GCGC 3 cut(s) 146, 230, 1154
HincII GTYRAC 2 cut(s) 703, 882
HindII GTYRAC 2 cut(s) 703, 882
HinfI GANTC 7 cut(s) 298, 527, 859, 1217, 1295, 1660, 1943
HpaI GTTAAC 1 cut(s) 703
HpaII CCGG 2 cut(s) 243, 363
HphI GGTGA 5 cut(s) 163, 536, 689, 1535, 1835
Hpy166II GTNNAC 5 cut(s) 16, 118, 703, 882, 1406
Hpy188III TCNNGA 7 cut(s) 363, 918, 1292, 1834, 1840, 1887, 1916
Hpy8I GTNNAC 5 cut(s) 16, 118, 703, 882, 1406
Hpy99I CGWCG 2 cut(s) 116, 886
HpyAV CCTTC 9 cut(s) 431, 663, 666, 691, 924, 1350, 1422, 1549, 1922
HpyCH4III ACNGT 2 cut(s) 665, 935
HpyCH4IV ACGT 4 cut(s) 51, 65, 114, 261
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 586, 814, 1437, 1754
HpyF3I CTNAG 2 cut(s) 684, 1724
HpySE526I ACGT 4 cut(s) 51, 65, 114, 261
Hsp92I GRCGYC 3 cut(s) 65, 114, 884
Hsp92II CATG 8 cut(s) 37, 406, 1046, 1120, 1295, 1303, 1424, 1704
HspAI GCGC 3 cut(s) 146, 230, 1154
Kpn2I TCCGGA 1 cut(s) 362
KspAI GTTAAC 1 cut(s) 703
Kzo9I GATC 6 cut(s) 679, 799, 1525, 1742, 1836, 1869
LmnI GCTCC 4 cut(s) 40, 343, 835, 1099
Lsp1109I GCAGC 6 cut(s) 55, 448, 476, 589, 1245, 1790
LweI GCATC 7 cut(s) 216, 255, 271, 452, 576, 963, 1521
MaeI CTAG 6 cut(s) 302, 852, 873, 941, 1212, 1451
MaeII ACGT 4 cut(s) 51, 65, 114, 261
MaeIII GTNAC 5 cut(s) 22, 52, 287, 396, 1710
MalI GATC 6 cut(s) 681, 801, 1527, 1744, 1838, 1871
MboI GATC 6 cut(s) 679, 799, 1525, 1742, 1836, 1869
MboII GAAGA 9 cut(s) 73, 166, 307, 420, 886, 1080, 1202, 1325, 1873
MfeI CAATTG 1 cut(s) 1851
MflI RGATCY 1 cut(s) 1836
MhlI GDGCHC 2 cut(s) 102, 1408
MlsI TGGCCA 1 cut(s) 1278
MluNI TGGCCA 1 cut(s) 1278
MlyI GAGTC 1 cut(s) 1226
Mox20I TGGCCA 1 cut(s) 1278
MroI TCCGGA 1 cut(s) 362
MroXI GAANNNNTTC 2 cut(s) 1332, 1422
MscI TGGCCA 1 cut(s) 1278
MseI TTAA 5 cut(s) 561, 702, 822, 1680, 1960
MslI CAYNNNNRTG 1 cut(s) 1041
Msp20I TGGCCA 1 cut(s) 1278
MspI CCGG 2 cut(s) 243, 363
MspR9I CCNGG 4 cut(s) 95, 900, 1168, 1604
MunI CAATTG 1 cut(s) 1851
MvaI CCWGG 4 cut(s) 95, 900, 1168, 1604
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 5 cut(s) 35, 586, 814, 1437, 1754
NdeI CATATG 2 cut(s) 990, 1584
NdeII GATC 6 cut(s) 679, 799, 1525, 1742, 1836, 1869
NlaIII CATG 8 cut(s) 37, 406, 1046, 1120, 1295, 1303, 1424, 1704
NlaIV GGNNCC 5 cut(s) 99, 172, 508, 761, 1246
NmeAIII GCCGAG 1 cut(s) 476
NmuCI GTSAC 3 cut(s) 22, 52, 287
NsbI TGCGCA 1 cut(s) 1155
NspI RCATGY 1 cut(s) 1424
PagI TCATGA 1 cut(s) 1291
PaqCI CACCTGC 1 cut(s) 260
PceI AGGCCT 2 cut(s) 1431, 1559
PciI ACATGT 1 cut(s) 1420
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PdmI GAANNNNTTC 2 cut(s) 1332, 1422
PfeI GAWTC 6 cut(s) 298, 527, 859, 1295, 1660, 1943
PkrI GCNGC 8 cut(s) 45, 170, 463, 466, 576, 579, 1235, 1780
Ple19I CGATCG 1 cut(s) 1745
PleI GAGTC 1 cut(s) 1225
PpsI GAGTC 1 cut(s) 1225
Ppu21I YACGTR 1 cut(s) 52
PscI ACATGT 1 cut(s) 1420
PshAI GACNNNNGTC 1 cut(s) 1207
Psp6I CCWGG 4 cut(s) 93, 898, 1166, 1602
PspFI CCCAGC 2 cut(s) 265, 638
PspGI CCWGG 4 cut(s) 93, 898, 1166, 1602
PspN4I GGNNCC 5 cut(s) 99, 172, 508, 761, 1246
PspPI GGNCC 6 cut(s) 170, 506, 738, 760, 1076, 1244
PstI CTGCAG 1 cut(s) 466
PstNI CAGNNNCTG 1 cut(s) 1603
PsuI RGATCY 1 cut(s) 1836
PvuI CGATCG 1 cut(s) 1745
RsaI GTAC 4 cut(s) 50, 222, 1830, 1951
RsaNI GTAC 4 cut(s) 49, 221, 1829, 1950
RseI CAYNNNNRTG 1 cut(s) 1041
SalI GTCGAC 1 cut(s) 880
SaqAI TTAA 5 cut(s) 561, 702, 822, 1680, 1960
SatI GCNGC 8 cut(s) 44, 169, 462, 465, 575, 578, 1234, 1779
Sau3AI GATC 6 cut(s) 679, 799, 1525, 1742, 1836, 1869
Sau96I GGNCC 6 cut(s) 170, 506, 738, 760, 1076, 1244
ScaI AGTACT 1 cut(s) 1830
SchI GAGTC 1 cut(s) 1226
ScrFI CCNGG 4 cut(s) 95, 900, 1168, 1604
SduI GDGCHC 2 cut(s) 102, 1408
SfaNI GCATC 7 cut(s) 216, 255, 271, 452, 576, 963, 1521
SfcI CTRYAG 1 cut(s) 462
SinI GGWCC 2 cut(s) 760, 1244
SmiMI CAYNNNNRTG 1 cut(s) 1041
SmlI CTYRAG 1 cut(s) 742
SmoI CTYRAG 1 cut(s) 742
SseBI AGGCCT 2 cut(s) 1431, 1559
SsiI CCGC 8 cut(s) 38, 168, 186, 213, 447, 572, 575, 1671
SspI AATATT 1 cut(s) 136
SspMI CTAG 6 cut(s) 302, 852, 873, 941, 1212, 1451
StuI AGGCCT 2 cut(s) 1431, 1559
StyD4I CCNGG 4 cut(s) 93, 898, 1166, 1602
StyI CCWWGG 3 cut(s) 102, 1205, 1560
TaaI ACNGT 2 cut(s) 665, 935
TaiI ACGT 4 cut(s) 54, 68, 117, 264
TaqI TCGA 5 cut(s) 584, 881, 1051, 1081, 1180
TatI WGTACW 2 cut(s) 220, 1828
TauI GCSGC 2 cut(s) 171, 577
TfiI GAWTC 6 cut(s) 298, 527, 859, 1295, 1660, 1943
Tru1I TTAA 5 cut(s) 561, 702, 822, 1680, 1960
Tru9I TTAA 5 cut(s) 561, 702, 822, 1680, 1960
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 3 cut(s) 22, 52, 287
TseI GCWGC 6 cut(s) 43, 461, 464, 577, 1233, 1778
Tsp45I GTSAC 3 cut(s) 22, 52, 287
TspDTI ATGAA 8 cut(s) 173, 1277, 1316, 1332, 1719, 1788, 1865, 1874
TspGWI ACGGA 2 cut(s) 33, 1505
TspRI CASTG 1 cut(s) 75
VneI GTGCAC 1 cut(s) 1404
VpaK11BI GGWCC 2 cut(s) 760, 1244
XapI RAATTY 5 cut(s) 839, 904, 1030, 1225, 1717
XceI RCATGY 1 cut(s) 1424
XmiI GTMKAC 1 cut(s) 881
XmnI GAANNNNTTC 2 cut(s) 1332, 1422
XspI CTAG 6 cut(s) 302, 852, 873, 941, 1212, 1451
ZraI GACGTC 2 cut(s) 66, 115
ZrmI AGTACT 1 cut(s) 1830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.