Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008593

Physical Location & Seq

Genomic Coordinates Reverse (-)

18852711 .. 18853555

Gene Structure 845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0201500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGAGTCTCTTCTGATATCAATAATTTTGTTCCTTTTCTTTTTCTTGGGTAAATTGGGTTCCTGCTATGATGAAAGGAAAGACGATGTTTCACGTACCATCACGGTCAACAAGGATGGTAATGCAGATTTTACCACCGTCCAACAAGCCATCGATTCTGTCCCATCAAACAACGCGGTTTGGATTCGTATCCTGCTTAACCATGGTGTTTACTCTGAAAAAATTGTGATCCCGAAAGATAGACCATATATTATTCTTGAAGGAGATCCTAAAACCCTTACTACGATTGAATGGGGAGATGCTGGAGATGTTATTAACAGTGCCACATTTACCTTACGTGCGAGTGATTTTGTGGCACGATATGTTTATTTCAAGAATACGTATGACGGTCTTAAATCGAATAACGGGAGGGAAACGAATTGGGCAGTTGCCGCTTTAATTTTCGGAGACAGAGCAAGTTTTTACCAGTGTAGCTTCTTAAGCTTGAAAGATACACTGTGGGATGCCCGAGGGGTCGTCACTATTTTTGGGGCTGCAATATTACTGGTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

184

Amino Acids

20.59

Weight (kDa)

5.15

Isoelectric Point (pI)

19.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectinesterase	PF01095	34 - 167	1.3e-20	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22070
fragaria_vesca	FvH4_6g24010 FvH4_6g24010
malus_domestica	MD01G1046800.v1.1 MD16G1282200.v1.1
prunus_persica	Prupe.3G166700_v2.0.a1
pyrus_communis	pycom01g07270
rosa_chinensis	RchiOBHm_Chr2g0115941
rosa_laevigata	RLG00000018225
rosa_multiflora	Rmu_co8514103.1_g000001 Rmu_sc0025044.1_g000002 Rmu_ssc0000197.1_g000005
rosa_roxburghii	Rroxscaffold_2G00127720 Rroxscaffold_2G00128490
rosa_rugosa	Rorug02G0201400 Rorug02G0201500 Rorug02G0201600 Rorug02G0201700
rosa_samantha	Rh2AG258200 Rh2BG269300 Rh2CG264900 Rh2DG266600
rosa_wichuraiana	Rw2G020250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	176
AciI	CCGC	2 cut(s)	176, 432
AclWI	GGATC	2 cut(s)	223, 260
AfaI	GTAC	1 cut(s)	97
AflII	CTTAAG	1 cut(s)	478
AgsI	TTSAA	4 cut(s)	260, 290, 373, 487
AluBI	AGCT	2 cut(s)	474, 483
AluI	AGCT	2 cut(s)	474, 483
Alw26I	GTCTC	2 cut(s)	12, 441
AlwI	GGATC	2 cut(s)	223, 260
Ama87I	CYCGRG	1 cut(s)	507
ApeKI	GCWGC	1 cut(s)	533
AvaI	CYCGRG	1 cut(s)	507
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	4 cut(s)	107, 110, 158, 172
BciVI	GTATCC	1 cut(s)	200
BcoDI	GTCTC	2 cut(s)	12, 441
BfmI	CTRYAG	1 cut(s)	551
BfrI	CTTAAG	1 cut(s)	478
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	2 cut(s)	432, 534
BlsI	GCNGC	2 cut(s)	433, 535
BmeT110I	CYCGRG	1 cut(s)	507
BmiI	GGNNCC	1 cut(s)	61
BmsI	GCATC	2 cut(s)	289, 493
BpmI	CTGGAG	1 cut(s)	324
Bsa29I	ATCGAT	1 cut(s)	153
BsaAI	YACGTR	3 cut(s)	95, 338, 381
BsaBI	GATNNNNATC	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	202, 508
Bse1I	ACTGG	2 cut(s)	466, 549
Bse8I	GATNNNNATC	1 cut(s)	188
BseCI	ATCGAT	1 cut(s)	153
BseDI	CCNNGG	2 cut(s)	202, 508
BseGI	GGATG	2 cut(s)	121, 508
BseJI	GATNNNNATC	1 cut(s)	188
BseNI	ACTGG	2 cut(s)	466, 549
BseXI	GCAGC	1 cut(s)	520
Bsh1236I	CGCG	1 cut(s)	176
BshVI	ATCGAT	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	507
BslFI	GGGAC	1 cut(s)	146
BsmAI	GTCTC	2 cut(s)	12, 441
BsmFI	GGGAC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	507
Bsp143I	GATC	2 cut(s)	228, 265
Bsp19I	CCATGG	1 cut(s)	202
BspACI	CCGC	2 cut(s)	176, 432
BspDI	ATCGAT	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	2 cut(s)	223, 260
BspTI	CTTAAG	1 cut(s)	478
BsrI	ACTGG	2 cut(s)	466, 549
BssECI	CCNNGG	2 cut(s)	202, 508
BssMI	GATC	2 cut(s)	228, 265
BssT1I	CCWWGG	1 cut(s)	202
Bst4CI	ACNGT	5 cut(s)	106, 139, 320, 389, 498
Bst6I	CTCTTC	1 cut(s)	15
BstAFI	CTTAAG	1 cut(s)	478
BstBAI	YACGTR	3 cut(s)	95, 338, 381
BstDSI	CCRYGG	1 cut(s)	202
BstF5I	GGATG	2 cut(s)	121, 508
BstFNI	CGCG	1 cut(s)	176
BstKTI	GATC	2 cut(s)	231, 268
BstMAI	GTCTC	2 cut(s)	12, 441
BstMBI	GATC	2 cut(s)	228, 265
BstMWI	GCNNNNNNNGC	2 cut(s)	431, 480
BstSFI	CTRYAG	1 cut(s)	551
BstSNI	TACGTA	1 cut(s)	381
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	520
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
Bsu15I	ATCGAT	1 cut(s)	153
BsuI	GTATCC	1 cut(s)	200
BsuTUI	ATCGAT	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	202
BtsCI	GGATG	2 cut(s)	121, 508
BtsIMutI	CAGTG	3 cut(s)	325, 473, 494
ClaI	ATCGAT	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	4 cut(s)	149, 474, 483, 533
CviKI_1	RGCY	4 cut(s)	149, 474, 483, 533
CviQI	GTAC	1 cut(s)	96
DpnI	GATC	2 cut(s)	230, 267
DpnII	GATC	2 cut(s)	228, 265
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco105I	TACGTA	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	202
Eco32I	GATATC	1 cut(s)	18
Eco88I	CYCGRG	1 cut(s)	507
EcoRV	GATATC	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	1 cut(s)	206
FaiI	YATR	7 cut(s)	69, 204, 247, 249, 363, 384, 553
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	1 cut(s)	202
Fnu4HI	GCNGC	2 cut(s)	432, 534
FokI	GGATG	2 cut(s)	128, 515
Fsp4HI	GCNGC	2 cut(s)	432, 534
GluI	GCNGC	2 cut(s)	432, 534
GsuI	CTGGAG	1 cut(s)	324
Hin1II	CATG	1 cut(s)	206
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	481
HinfI	GANTC	3 cut(s)	5, 155, 184
Hpy166II	GTNNAC	2 cut(s)	109, 211
Hpy188I	TCNGA	3 cut(s)	15, 217, 446
Hpy188III	TCNNGA	3 cut(s)	232, 257, 373
Hpy8I	GTNNAC	2 cut(s)	109, 211
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	5 cut(s)	106, 139, 320, 389, 498
HpyCH4IV	ACGT	3 cut(s)	94, 337, 380
HpyCH4V	TGCA	2 cut(s)	125, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	431, 480
HpySE526I	ACGT	3 cut(s)	94, 337, 380
Hsp92II	CATG	1 cut(s)	206
Kzo9I	GATC	2 cut(s)	228, 265
LpnPI	CCDG	5 cut(s)	76, 206, 288, 479, 530
Lsp1109I	GCAGC	1 cut(s)	520
LweI	GCATC	2 cut(s)	289, 493
MaeII	ACGT	3 cut(s)	94, 337, 380
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	2 cut(s)	230, 267
MboI	GATC	2 cut(s)	228, 265
MflI	RGATCY	1 cut(s)	265
MluCI	AATT	5 cut(s)	24, 53, 222, 418, 438
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	166
MnlI	CCTC	2 cut(s)	402, 503
MseI	TTAA	5 cut(s)	198, 315, 393, 437, 479
MspCI	CTTAAG	1 cut(s)	478
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	431, 480
NcoI	CCATGG	1 cut(s)	202
NdeII	GATC	2 cut(s)	228, 265
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	517
PfeI	GAWTC	2 cut(s)	155, 184
PkrI	GCNGC	2 cut(s)	433, 535
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Ppu21I	YACGTR	3 cut(s)	95, 338, 381
PspN4I	GGNNCC	1 cut(s)	61
PsrI	GAACNNNNNNTAC	2 cut(s)	43, 75
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
SaqAI	TTAA	5 cut(s)	198, 315, 393, 437, 479
SatI	GCNGC	2 cut(s)	432, 534
Sau3AI	GATC	2 cut(s)	228, 265
SchI	GAGTC	1 cut(s)	14
SetI	ASST	6 cut(s)	97, 335, 340, 383, 476, 485
SfaNI	GCATC	2 cut(s)	289, 493
SfcI	CTRYAG	1 cut(s)	551
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
SnaBI	TACGTA	1 cut(s)	381
Sse9I	AATT	5 cut(s)	24, 53, 222, 418, 438
SsiI	CCGC	2 cut(s)	176, 432
SspI	AATATT	1 cut(s)	540
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	5 cut(s)	106, 139, 320, 389, 498
TaiI	ACGT	3 cut(s)	97, 340, 383
TaqI	TCGA	2 cut(s)	153, 398
TasI	AATT	5 cut(s)	24, 53, 222, 418, 438
TauI	GCSGC	1 cut(s)	434
TfiI	GAWTC	2 cut(s)	155, 184
Tru1I	TTAA	5 cut(s)	198, 315, 393, 437, 479
Tru9I	TTAA	5 cut(s)	198, 315, 393, 437, 479
TscAI	CASTG	3 cut(s)	325, 473, 501
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	1 cut(s)	87
TspRI	CASTG	3 cut(s)	325, 473, 501
Vha464I	CTTAAG	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.