Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008593

Physical Location & Seq

Genomic Coordinates Reverse (-)

28994570 .. 29000089

Gene Structure 5520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG269300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2208 bp

ATGAACAATCTCATGAACTATTACATCAAAACTGGGTCTTATGTCGATGCACGCAACGTGTTCGATGAAATGCCTGTGAGAAACAAGTTTTCATGGAACACGATTCTCTCTGGTTACACAAAGCAGGGAAGGCTCGATGCAGCTTGGGGAGTTTTTAATGAAATGCCTGAACGCGACTCGGTTTCGTGGACTGCGATGATTGTGGGTTATAATCAGATGGGGAGATATGGTAATGCGATTCGGATGTTCTTGGACATGGTTTCGGATGGAGTTCCTGTGACCCAGTTCACTGTTACTAACATTCTTTCGGCATGCGCTTCGATTAAGGGTTTGGATATTGGTAGGAAGGTGCATTCCTTTGTTGTTAAGCTTGCTGTTGGTAGTTATGTTTCGGTTGGGAACTGCCTTTTAAATATGTATGCGAAATGCGGTGATCCGGGGACTGCACAGATTGTTTTTGATAGGATGAGATTGAAAAATGTATCGAGCTGGAATCATATGATTATGTTACATATGCAATGTGGTCGTGCAGACCTTGCTCTTGCACAGTTTAATCAAATGACGGAGCGCGACATTGTTTCTTGGAATTCAATGATTGCTGGATACAACCAGCATGGGCTCGATATGGAAGCAGTGGCTACCTTCTTAAGTATGGTGAAGGATTCTTTTCTAACGCCTGATAAGTTCACCTTGGCAAGCATCTTGTCAGCTTGTGCTAACCTTGAGAAGTTGGAACTTGGAAAACAAATACATGTTCTTATTATAAGAGCTGGATTGGACACATCCGAAGCAGTGGTTAATGCTTTGATTTCAATGTATGCCAAGTCTGGTGGGTTGGAAATTGCTGAAAAGGTTTTAGAGCAATGTGGAACTTCAGATCTCAATCTTATAGCTTTTACTGCCTTATTGGATGGATACATTAAGGTTGGGGATGTTAACCCAGCGAGACAGATATTTGACTCATTGAGAGAATGTGATGTGGTAGCATGGACAGCTATGATTGTCGGTTATGTGCAGAATGGGTTGAATAATGATGCTTTGGAGCTCTTTAGGTCAATGATAGCAGGAGGCCCCAGGCCAAACAACTACACCTTAGCAGCTATGTTAAGTGTCAGTTCAAGCTTGGCTTCTTTGGATTATGGAAAACAAATTCATGCAAGTGCTATACGAACAGGAGAAGTGTCTTCAGTTTCCGTGGGCAATGCTCTAATTACCATGTATTCCAAAGCTGGAAGCATCAGTGGTGCAAAGCAAGTTTTCAATCTGATTGATCGGAATAGAGATACTGTTTCTTGGAGTTCCATGATTATAGCCCTGGCTCAACATGGTCTTGGGGAAGAATCCATTGAACTATTTGAGAAGATGCTGTCACTTGGTATTAGGCCCGACCATGTAACTTATGTTGGGGTGCTCTCTGCTTGTACACATGTGGGGTTGGTCGACCAGGGCAGGAGCTACTATAATTTGATGAGAAGCGTACACAAGATTGAACCCACCCATAGCCATTATGCATGTATGGTTGATCTGCTTGGGCGTGCTGGGTTACTTCAAGAAGCATACGACGTGATACAAAATATGCCAATTGAACCTGATGTAATAGCTTGGGGTTCACTTTTATCTGCTTGTAAGCTTCATAAAAATGTGGATTTGGCTAAAGTTGCAGCAGACAAATTGCTCCTTATTGAACCAGACAACAGTGGGGCCTATTCAGCCCTTGCTAATTTGTATTCAGCATGTGGAAAGTGGGCAGATGCTGCAGAAGTAAGAAAGCTAATGAAGAATAGGAGAGTGAAGAAAGGCCAAGGGTTTAGTTGGCTTGAGTATCAGAACAAAGTCCATGTGTTTGGGGTTGACGATGGAGTTCACCCACAGAGAGATGGAATCTACAAGATGATGGAGAAAATCTGGAAAGAGATTAAAAATATCGGTTTTGTCCCTGATATTGAGTCAGTATTGCACGACGTTGCAGAAGAATTGAAGGAGAAGATGCTTATGCATCACAGTGAGAAACTTGCAATTGCATTTGGGCTAATAAATACTCCAGAGAACAGTACGCTGAGGATTATGAAGAACCTCAGAGTTTGTAATGATTGTCACTCTGCCATTAAATTTATATCCAAGCTTGTGGGAAGAGAAATCGTTCTGAGAGACGCTACTCGTTTTCACCATTTTAAGAATGGGACTTGTTCTTGTCGGGACTATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

735

Amino Acids

81.52

Weight (kDa)

7.28

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	28 - 58	8.2e-08	PPR repeat family
PPR	PF01535	30 - 58	9.8e-07	PPR repeat
PPR_2	PF13041	59 - 106	8.4e-08	PPR repeat family
PPR_2	PF13041	326 - 369	1.2e-08	PPR repeat family
PPR_2	PF13041	427 - 474	7.7e-09	PPR repeat family
PPR	PF01535	430 - 460	3e-07	PPR repeat
E_motif	PF20431	545 - 607	9.8e-16	E motif
DYW_deaminase	PF14432	643 - 735	4.5e-44	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22070
fragaria_vesca	FvH4_6g24010 FvH4_6g24010
malus_domestica	MD01G1046800.v1.1 MD16G1282200.v1.1
prunus_persica	Prupe.3G166700_v2.0.a1
pyrus_communis	pycom01g07270
rosa_chinensis	RchiOBHm_Chr2g0115941
rosa_laevigata	RLG00000018225
rosa_multiflora	Rmu_co8514103.1_g000001 Rmu_sc0025044.1_g000002 Rmu_ssc0000197.1_g000005
rosa_roxburghii	Rroxscaffold_2G00127720 Rroxscaffold_2G00128490
rosa_rugosa	Rorug02G0201400 Rorug02G0201500 Rorug02G0201600 Rorug02G0201700
rosa_samantha	Rh2AG258200 Rh2BG269300 Rh2CG264900 Rh2DG266600
rosa_wichuraiana	Rw2G020250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	210, 764
AccI	GTMKAC	1 cut(s)	1440
AccII	CGCG	2 cut(s)	174, 570
AciI	CCGC	1 cut(s)	429
AclWI	GGATC	1 cut(s)	428
AcsI	RAATTY	3 cut(s)	586, 1149, 2108
AcuI	CTGAAG	2 cut(s)	858, 1170
AfaI	GTAC	3 cut(s)	1423, 1479, 2053
AflII	CTTAAG	1 cut(s)	646
AflIII	ACRYGT	3 cut(s)	57, 751, 1426
AjiI	CACGTC	1 cut(s)	1564
AjnI	CCWGG	3 cut(s)	1073, 1314, 1443
Alw21I	GWGCWC	2 cut(s)	1047, 1413
Alw26I	GTCTC	2 cut(s)	940, 2142
AlwI	GGATC	1 cut(s)	428
AlwNI	CAGNNNCTG	1 cut(s)	1754
AoxI	GGCC	5 cut(s)	1069, 1076, 1382, 1701, 1798
ApeKI	GCWGC	4 cut(s)	140, 1097, 1661, 1754
ApoI	RAATTY	3 cut(s)	586, 1149, 2108
Asp700I	GAANNNNTTC	1 cut(s)	2139
AspLEI	GCGC	2 cut(s)	317, 570
AspS9I	GGNCC	3 cut(s)	1070, 1383, 1701
AsuC2I	CCSGG	1 cut(s)	438
AsuHPI	GGTGA	5 cut(s)	443, 667, 679, 1856, 2156
BanII	GRGCYC	2 cut(s)	621, 1047
BbsI	GAAGAC	1 cut(s)	1176
Bbv12I	GWGCWC	2 cut(s)	1047, 1413
BbvCI	CCTCAGC	1 cut(s)	2057
BbvI	GCAGC	4 cut(s)	152, 1109, 1673, 1741
BccI	CCATC	6 cut(s)	211, 260, 905, 1850, 1871, 1888
BcgI	CGANNNNNNTGC	6 cut(s)	43, 77, 300, 334, 506, 540
BciT130I	CCWGG	3 cut(s)	1075, 1316, 1445
BciVI	GTATCC	2 cut(s)	596, 908
BcnI	CCSGG	1 cut(s)	438
BcoDI	GTCTC	2 cut(s)	940, 2142
BfmI	CTRYAG	1 cut(s)	1755
BfrI	CTTAAG	1 cut(s)	646
BfuI	GTATCC	2 cut(s)	596, 908
BglII	AGATCT	1 cut(s)	877
BisI	GCNGC	4 cut(s)	141, 1098, 1662, 1755
BlsI	GCNGC	4 cut(s)	142, 1099, 1663, 1756
Bme1390I	CCNGG	4 cut(s)	438, 1075, 1316, 1445
BmgBI	CACGTC	1 cut(s)	1564
BmgT120I	GGNCC	3 cut(s)	1070, 1383, 1701
BmiI	GGNNCC	2 cut(s)	1072, 1702
BmrFI	CCNGG	4 cut(s)	438, 1075, 1316, 1445
BmrI	ACTGGG	2 cut(s)	42, 277
BmsI	GCATC	9 cut(s)	37, 127, 708, 1024, 1245, 1353, 1741, 1977, 2005
BmuI	ACTGGG	2 cut(s)	42, 277
BpiI	GAAGAC	1 cut(s)	1176
BpmI	CTGGAG	1 cut(s)	2025
Bpu10I	CCTNAGC	2 cut(s)	1093, 2057
BpuEI	CTTGAG	2 cut(s)	743, 1838
BpuMI	CCSGG	1 cut(s)	438
BsaBI	GATNNNNATC	1 cut(s)	882
BsaJI	CCNNGG	7 cut(s)	437, 690, 1073, 1194, 1314, 1444, 1801
BsaXI	ACNNNNNCTCC	4 cut(s)	214, 244, 261, 291
Bse1I	ACTGG	2 cut(s)	37, 283
Bse3DI	GCAATG	3 cut(s)	524, 869, 1207
Bse8I	GATNNNNATC	1 cut(s)	882
BseBI	CCWGG	3 cut(s)	1075, 1316, 1445
BseDI	CCNNGG	7 cut(s)	437, 690, 1073, 1194, 1314, 1444, 1801
BseGI	GGATG	6 cut(s)	249, 271, 471, 782, 916, 937
BseJI	GATNNNNATC	1 cut(s)	882
BseMI	GCAATG	3 cut(s)	524, 869, 1207
BseMII	CTCAG	3 cut(s)	2048, 2089, 2135
BseNI	ACTGG	2 cut(s)	37, 283
BseXI	GCAGC	4 cut(s)	152, 1109, 1673, 1741
BseYI	CCCAGC	2 cut(s)	940, 1538
BsgI	GTGCAG	3 cut(s)	429, 549, 1034
Bsh1236I	CGCG	2 cut(s)	174, 570
BshFI	GGCC	5 cut(s)	1071, 1078, 1384, 1703, 1800
BsiHKAI	GWGCWC	2 cut(s)	1047, 1413
BsiSI	CCGG	1 cut(s)	437
BslFI	GGGAC	3 cut(s)	454, 1919, 2194
BsmAI	GTCTC	2 cut(s)	940, 2142
BsmBI	CGTCTC	1 cut(s)	2142
BsmFI	GGGAC	3 cut(s)	454, 1919, 2194
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	5 cut(s)	1071, 1078, 1384, 1703, 1800
Bsp1286I	GDGCHC	3 cut(s)	621, 1047, 1413
Bsp1407I	TGTACA	1 cut(s)	1421
Bsp143I	GATC	4 cut(s)	433, 877, 1270, 1522
BspACI	CCGC	1 cut(s)	429
BspANI	GGCC	5 cut(s)	1071, 1078, 1384, 1703, 1800
BspCNI	CTCAG	3 cut(s)	2049, 2088, 2136
BspFNI	CGCG	2 cut(s)	174, 570
BspHI	TCATGA	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	1072, 1702
BspMAI	CTGCAG	1 cut(s)	1759
BspPI	GGATC	1 cut(s)	428
BspTI	CTTAAG	1 cut(s)	646
BsrDI	GCAATG	3 cut(s)	524, 869, 1207
BsrGI	TGTACA	1 cut(s)	1421
BsrI	ACTGG	2 cut(s)	37, 283
BssECI	CCNNGG	7 cut(s)	437, 690, 1073, 1194, 1314, 1444, 1801
BssMI	GATC	4 cut(s)	433, 877, 1270, 1522
BssT1I	CCWWGG	2 cut(s)	690, 1801
Bst2UI	CCWGG	3 cut(s)	1075, 1316, 1445
Bst4CI	ACNGT	6 cut(s)	292, 549, 1288, 1697, 2003, 2051
Bst6I	CTCTTC	1 cut(s)	2125
BstAFI	CTTAAG	1 cut(s)	646
BstAPI	GCANNNNNTGC	2 cut(s)	536, 1754
BstAUI	TGTACA	1 cut(s)	1421
BstC8I	GCNNGC	5 cut(s)	52, 313, 372, 697, 1536
BstDEI	CTNAG	4 cut(s)	1093, 2057, 2075, 2144
BstDSI	CCRYGG	1 cut(s)	1194
BstF5I	GGATG	6 cut(s)	249, 271, 471, 782, 916, 937
BstFNI	CGCG	2 cut(s)	174, 570
BstHHI	GCGC	2 cut(s)	317, 570
BstKTI	GATC	4 cut(s)	436, 880, 1273, 1525
BstMAI	GTCTC	2 cut(s)	940, 2142
BstMBI	GATC	4 cut(s)	433, 877, 1270, 1522
BstMWI	GCNNNNNNNGC	7 cut(s)	130, 536, 899, 992, 1658, 1709, 1754
BstNI	CCWGG	3 cut(s)	1075, 1316, 1445
BstNSI	RCATGY	5 cut(s)	315, 755, 1430, 1515, 1737
BstSCI	CCNGG	4 cut(s)	436, 1073, 1314, 1443
BstSFI	CTRYAG	1 cut(s)	1755
BstUI	CGCG	2 cut(s)	174, 570
BstV1I	GCAGC	4 cut(s)	152, 1109, 1673, 1741
BstV2I	GAAGAC	1 cut(s)	1176
BstX2I	RGATCY	1 cut(s)	877
BstXI	CCANNNNNNTGG	2 cut(s)	1844, 2125
BstYI	RGATCY	1 cut(s)	877
BsuI	GTATCC	2 cut(s)	596, 908
BsuRI	GGCC	5 cut(s)	1071, 1078, 1384, 1703, 1800
BtgI	CCRYGG	1 cut(s)	1194
BtgZI	GCGATG	1 cut(s)	209
BtrI	CACGTC	1 cut(s)	1564
BtsCI	GGATG	6 cut(s)	249, 271, 471, 782, 916, 937
BtsI	GCAGTG	2 cut(s)	639, 798
BtsIMutI	CAGTG	6 cut(s)	288, 639, 798, 1246, 1702, 2008
Cac8I	GCNNGC	5 cut(s)	52, 313, 372, 697, 1536
CaiI	CAGNNNCTG	1 cut(s)	1754
CciI	TCATGA	1 cut(s)	12
CfoI	GCGC	2 cut(s)	317, 570
Cfr13I	GGNCC	3 cut(s)	1070, 1383, 1701
CseI	GACGC	1 cut(s)	2159
Csp6I	GTAC	3 cut(s)	1422, 1478, 2052
CspCI	CAANNNNNGTGG	2 cut(s)	811, 846
CviQI	GTAC	3 cut(s)	1422, 1478, 2052
DdeI	CTNAG	4 cut(s)	1093, 2057, 2075, 2144
DpnI	GATC	4 cut(s)	435, 879, 1272, 1524
DpnII	GATC	4 cut(s)	433, 877, 1270, 1522
DraI	TTTAAA	1 cut(s)	411
Eam1104I	CTCTTC	1 cut(s)	2125
EarI	CTCTTC	1 cut(s)	2125
Ecl136II	GAGCTC	1 cut(s)	1045
Eco130I	CCWWGG	2 cut(s)	690, 1801
Eco24I	GRGCYC	2 cut(s)	621, 1047
Eco53kI	GAGCTC	1 cut(s)	1045
Eco57I	CTGAAG	2 cut(s)	858, 1170
EcoICRI	GAGCTC	1 cut(s)	1045
EcoO109I	RGGNCCY	2 cut(s)	1070, 1701
EcoRI	GAATTC	1 cut(s)	586
EcoRII	CCWGG	3 cut(s)	1073, 1314, 1443
EcoT14I	CCWWGG	2 cut(s)	690, 1801
EcoT22I	ATGCAT	2 cut(s)	1513, 1998
EcoT38I	GRGCYC	2 cut(s)	621, 1047
ErhI	CCWWGG	2 cut(s)	690, 1801
Esp3I	CGTCTC	1 cut(s)	2142
FalI	AAGNNNNNCTT	4 cut(s)	674, 706, 1111, 1143
FaqI	GGGAC	3 cut(s)	454, 1919, 2194
FauNDI	CATATG	2 cut(s)	498, 513
FblI	GTMKAC	1 cut(s)	1440
Fnu4HI	GCNGC	4 cut(s)	141, 1098, 1662, 1755
FokI	GGATG	6 cut(s)	256, 278, 478, 769, 923, 944
FriOI	GRGCYC	2 cut(s)	621, 1047
Fsp4HI	GCNGC	4 cut(s)	141, 1098, 1662, 1755
GlaI	GCGC	2 cut(s)	316, 569
GluI	GCNGC	4 cut(s)	141, 1098, 1662, 1755
GsaI	CCCAGC	2 cut(s)	944, 1542
GsuI	CTGGAG	1 cut(s)	2025
HaeIII	GGCC	5 cut(s)	1071, 1078, 1384, 1703, 1800
HapII	CCGG	1 cut(s)	437
HgaI	GACGC	1 cut(s)	2159
HhaI	GCGC	2 cut(s)	317, 570
Hin6I	GCGC	2 cut(s)	315, 568
HinP1I	GCGC	2 cut(s)	315, 568
HincII	GTYRAC	3 cut(s)	937, 1441, 1852
HindII	GTYRAC	3 cut(s)	937, 1441, 1852
HindIII	AAGCTT	4 cut(s)	368, 1120, 1628, 2120
HinfI	GANTC	9 cut(s)	103, 176, 238, 493, 662, 959, 1340, 1881, 1946
HpaI	GTTAAC	1 cut(s)	937
HpaII	CCGG	1 cut(s)	437
HphI	GGTGA	5 cut(s)	443, 667, 679, 1856, 2156
Hpy188III	TCNNGA	5 cut(s)	13, 1550, 1906, 2042, 2195
Hpy99I	CGWCG	2 cut(s)	1565, 1964
HpyAV	CCTTC	5 cut(s)	123, 340, 652, 652, 1972
HpyCH4III	ACNGT	6 cut(s)	292, 549, 1288, 1697, 2003, 2051
HpyCH4IV	ACGT	3 cut(s)	57, 1563, 1962
HpyF10VI	GCNNNNNNNGC	7 cut(s)	130, 536, 899, 992, 1658, 1709, 1754
HpyF3I	CTNAG	4 cut(s)	1093, 2057, 2075, 2144
HpySE526I	ACGT	3 cut(s)	57, 1563, 1962
HspAI	GCGC	2 cut(s)	315, 568
KspAI	GTTAAC	1 cut(s)	937
Kzo9I	GATC	4 cut(s)	433, 877, 1270, 1522
LmnI	GCTCC	4 cut(s)	565, 1042, 1452, 1680
Lsp1109I	GCAGC	4 cut(s)	152, 1109, 1673, 1741
LweI	GCATC	9 cut(s)	37, 127, 708, 1024, 1245, 1353, 1741, 1977, 2005
MaeII	ACGT	3 cut(s)	57, 1563, 1962
MaeIII	GTNAC	8 cut(s)	113, 277, 292, 507, 1368, 1393, 1542, 2093
MalI	GATC	4 cut(s)	435, 879, 1272, 1524
MboI	GATC	4 cut(s)	433, 877, 1270, 1522
MboII	GAAGA	9 cut(s)	1176, 1349, 1372, 1789, 1804, 1982, 1996, 2080, 2142
MfeI	CAATTG	2 cut(s)	1581, 2016
MflI	RGATCY	1 cut(s)	877
MhlI	GDGCHC	3 cut(s)	621, 1047, 1413
MlyI	GAGTC	3 cut(s)	170, 953, 1955
MmeI	TCCRAC	2 cut(s)	711, 816
MnlI	CCTC	3 cut(s)	1061, 2052, 2084
Mph1103I	ATGCAT	2 cut(s)	1513, 1998
MroXI	GAANNNNTTC	1 cut(s)	2139
MslI	CAYNNNNRTG	3 cut(s)	1158, 1638, 2001
MspCI	CTTAAG	1 cut(s)	646
MspI	CCGG	1 cut(s)	437
MspR9I	CCNGG	4 cut(s)	438, 1075, 1316, 1445
MunI	CAATTG	2 cut(s)	1581, 2016
Mva1269I	GAATGC	1 cut(s)	352
MvaI	CCWGG	3 cut(s)	1075, 1316, 1445
MvnI	CGCG	2 cut(s)	174, 570
MwoI	GCNNNNNNNGC	7 cut(s)	130, 536, 899, 992, 1658, 1709, 1754
NciI	CCSGG	1 cut(s)	438
NdeI	CATATG	2 cut(s)	498, 513
NdeII	GATC	4 cut(s)	433, 877, 1270, 1522
NlaIV	GGNNCC	2 cut(s)	1072, 1702
NmuCI	GTSAC	3 cut(s)	277, 1368, 2093
NsiI	ATGCAT	2 cut(s)	1513, 1998
NspI	RCATGY	5 cut(s)	315, 755, 1430, 1515, 1737
PaeI	GCATGC	1 cut(s)	315
PagI	TCATGA	1 cut(s)	12
PciI	ACATGT	2 cut(s)	751, 1426
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PctI	GAATGC	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	2139
PfeI	GAWTC	6 cut(s)	103, 238, 493, 662, 1340, 1881
PkrI	GCNGC	4 cut(s)	142, 1099, 1663, 1756
PleI	GAGTC	3 cut(s)	170, 953, 1954
PpsI	GAGTC	3 cut(s)	170, 953, 1954
PscI	ACATGT	2 cut(s)	751, 1426
PsiI	TTATAA	2 cut(s)	210, 764
Psp124BI	GAGCTC	1 cut(s)	1047
Psp6I	CCWGG	3 cut(s)	1073, 1314, 1443
PspFI	CCCAGC	2 cut(s)	940, 1538
PspGI	CCWGG	3 cut(s)	1073, 1314, 1443
PspN4I	GGNNCC	2 cut(s)	1072, 1702
PspPI	GGNCC	3 cut(s)	1070, 1383, 1701
PstI	CTGCAG	1 cut(s)	1759
PstNI	CAGNNNCTG	1 cut(s)	1754
PsuI	RGATCY	1 cut(s)	877
RsaI	GTAC	3 cut(s)	1423, 1479, 2053
RsaNI	GTAC	3 cut(s)	1422, 1478, 2052
RseI	CAYNNNNRTG	3 cut(s)	1158, 1638, 2001
SacI	GAGCTC	1 cut(s)	1047
SalI	GTCGAC	1 cut(s)	1439
SatI	GCNGC	4 cut(s)	141, 1098, 1662, 1755
Sau3AI	GATC	4 cut(s)	433, 877, 1270, 1522
Sau96I	GGNCC	3 cut(s)	1070, 1383, 1701
SchI	GAGTC	3 cut(s)	170, 953, 1955
ScrFI	CCNGG	4 cut(s)	438, 1075, 1316, 1445
SduI	GDGCHC	3 cut(s)	621, 1047, 1413
SfaNI	GCATC	9 cut(s)	37, 127, 708, 1024, 1245, 1353, 1741, 1977, 2005
SfcI	CTRYAG	1 cut(s)	1755
SmiMI	CAYNNNNRTG	3 cut(s)	1158, 1638, 2001
SmlI	CTYRAG	3 cut(s)	646, 722, 1817
SmoI	CTYRAG	3 cut(s)	646, 722, 1817
SphI	GCATGC	1 cut(s)	315
SsiI	CCGC	1 cut(s)	429
SstI	GAGCTC	1 cut(s)	1047
StyD4I	CCNGG	4 cut(s)	436, 1073, 1314, 1443
StyI	CCWWGG	2 cut(s)	690, 1801
TaaI	ACNGT	6 cut(s)	292, 549, 1288, 1697, 2003, 2051
TaiI	ACGT	3 cut(s)	60, 1566, 1965
TaqI	TCGA	7 cut(s)	45, 63, 135, 320, 485, 621, 1440
TatI	WGTACW	1 cut(s)	1421
TfiI	GAWTC	6 cut(s)	103, 238, 493, 662, 1340, 1881
TscAI	CASTG	6 cut(s)	295, 639, 798, 1246, 1702, 2008
TseFI	GTSAC	3 cut(s)	277, 1368, 2093
TseI	GCWGC	4 cut(s)	140, 1097, 1661, 1754
Tsp45I	GTSAC	3 cut(s)	277, 1368, 2093
TspDTI	ATGAA	9 cut(s)	17, 29, 81, 81, 174, 1142, 1622, 1790, 2081
TspGWI	ACGGA	2 cut(s)	578, 1183
TspRI	CASTG	6 cut(s)	295, 639, 798, 1246, 1702, 2008
Vha464I	CTTAAG	1 cut(s)	646
XapI	RAATTY	3 cut(s)	586, 1149, 2108
XceI	RCATGY	5 cut(s)	315, 755, 1430, 1515, 1737
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2174
XmiI	GTMKAC	1 cut(s)	1440
XmnI	GAANNNNTTC	1 cut(s)	2139
Zsp2I	ATGCAT	2 cut(s)	1513, 1998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.