Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004399

Physical Location & Seq

Genomic Coordinates Forward (+)

74379933 .. 74381746

Gene Structure 1814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0629100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGGAAAGAAAAAGGTGAACAAGGTGGTGCTGCTTGGAAAGCTAATTTCTAGATGCCGAACCGTCTTCGTCTTGGATCTGGAGAGGCAGCATGAGCGGAAACGTTCACTGCTTCGGCGGAGGTTTCCAATGATGGGAGCTGCTGGGTGCTTCGTTATCGCAAAAAACAGTACTATTAAAAGATTGATGATCGAGCACACGGAGGCGCATCCTACCTCAGCACTGGTTGCACTGGTTCCATATATCTATGGTGAAACTGCTTTGCTCTTCACATCTGAACACTGGGAGATGATGGATGATATCCTGCGTACTGAGTTTTTTCTCGCTCCCCATGCTGCTGTTTTGGAAGGCTCTCATGGCCTCTTAACAGGCACCGAACTGGAGGAGTATTGGGACAAGCGTAAGATTTCTTCTAGTCGTGAGAGGGATGCTGGTGCTCGTGCGTCTGTGGTGGTGAATCAATTGGCCACTGGCATTGAATTGTCGGTCTCTGGGGAAGAGGAAGAGTGGGAAGGTTTGGAGGATTCGACGGCGGATTGTATTGAAATGACTAATGAAGATTGTATTGCGGATTTTATTGATATGACTAGAGAAGATTGGTTTGAGCTGGAAGATTGGTTTGGATACAGGGGGAGTCTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016324 GO:0030427 GO:0035838 GO:0042995 GO:0044425 GO:0044459 GO:0044463 GO:0044464 GO:0045177 GO:0051286 GO:0071944 GO:0090404 GO:0090406 GO:0098590 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

214

Amino Acids

24.42

Weight (kDa)

5.09

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04690 AT5G28680 AT5G28680
fragaria_vesca	FvH4_4g19690 FvH4_6g02670
malus_domestica	MD04G1226200.v1.1 MD12G1243300.v1.1 MD13G1154700.v1.1
prunus_persica	Prupe.1G117700_v2.0.a1 Prupe.6G345000_v2.0.a1
pyrus_communis	pycom04g19940 pycom13g13150
rosa_chinensis	RchiOBHm_Chr3g0450621 RchiOBHm_Chr4g0425141
rosa_laevigata	RLG00000007395 RLG00000025717
rosa_multiflora	Rmu_sc0000078.1_g000041 Rmu_ssc0000420.1_g000041
rosa_roxburghii	Rroxscaffold_5G00367230 Rroxscaffold_6G00428300
rosa_rugosa	Rorug02G0629100 Rorug04G0201800
rosa_samantha	Rh3AG029800 Rh3BG030200 Rh3CG029100 Rh3DG029900 Rh4AG258400 Rh4BG264200 Rh4CG275300 Rh4DG260300
rosa_wichuraiana	Rw3G002300 Rw4G022370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	371
AccBSI	CCGCTC	1 cut(s)	97
AciI	CCGC	4 cut(s)	97, 118, 533, 569
AclI	AACGTT	1 cut(s)	103
AclWI	GGATC	1 cut(s)	84
AcoI	YGGCCR	1 cut(s)	465
AfaI	GTAC	2 cut(s)	172, 310
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	2 cut(s)	479, 545
AjuI	GAANNNNNNNTTGG	2 cut(s)	603, 635
AluBI	AGCT	3 cut(s)	43, 140, 607
AluI	AGCT	3 cut(s)	43, 140, 607
Alw21I	GWGCWC	2 cut(s)	198, 439
Alw26I	GTCTC	1 cut(s)	493
AlwI	GGATC	1 cut(s)	84
AoxI	GGCC	2 cut(s)	358, 465
ApeKI	GCWGC	4 cut(s)	31, 88, 140, 335
AspLEI	GCGC	1 cut(s)	208
AsuHPI	GGTGA	3 cut(s)	28, 263, 466
BalI	TGGCCA	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	371
BarI	GAAGNNNNNNTAC	2 cut(s)	394, 426
BauI	CACGAG	1 cut(s)	438
BbsI	GAAGAC	1 cut(s)	58
Bbv12I	GWGCWC	2 cut(s)	198, 439
BbvCI	CCTCAGC	1 cut(s)	217
BbvI	GCAGC	4 cut(s)	18, 100, 127, 322
BccI	CCATC	2 cut(s)	127, 286
BceAI	ACGGC	1 cut(s)	546
BciVI	GTATCC	1 cut(s)	617
BcoDI	GTCTC	1 cut(s)	493
BfaI	CTAG	3 cut(s)	51, 414, 588
BfuI	GTATCC	1 cut(s)	617
BisI	GCNGC	4 cut(s)	32, 89, 141, 336
BlsI	GCNGC	4 cut(s)	33, 90, 142, 337
BmcAI	AGTACT	1 cut(s)	172
BmiI	GGNNCC	2 cut(s)	237, 373
BmrI	ACTGGG	1 cut(s)	292
BmsI	GCATC	3 cut(s)	44, 217, 418
BmuI	ACTGGG	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	58
BpmI	CTGGAG	2 cut(s)	101, 401
Bpu10I	CCTNAGC	1 cut(s)	217
BsaI	GGTCTC	1 cut(s)	493
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse1I	ACTGG	5 cut(s)	228, 237, 287, 384, 475
BseGI	GGATG	3 cut(s)	208, 301, 433
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMII	CTCAG	2 cut(s)	231, 303
BseNI	ACTGG	5 cut(s)	228, 237, 287, 384, 475
BseRI	GAGGAG	1 cut(s)	398
BseXI	GCAGC	4 cut(s)	18, 100, 127, 322
BseYI	CCCAGC	1 cut(s)	143
BshFI	GGCC	2 cut(s)	360, 467
BshNI	GGYRCC	1 cut(s)	371
BsiHKAI	GWGCWC	2 cut(s)	198, 439
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	493
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	2 cut(s)	360, 467
Bso31I	GGTCTC	1 cut(s)	493
Bsp1286I	GDGCHC	2 cut(s)	198, 439
Bsp143I	GATC	2 cut(s)	76, 189
BspACI	CCGC	4 cut(s)	97, 118, 533, 569
BspANI	GGCC	2 cut(s)	360, 467
BspCNI	CTCAG	2 cut(s)	230, 304
BspLI	GGNNCC	2 cut(s)	237, 373
BspPI	GGATC	1 cut(s)	84
BspQI	GCTCTTC	1 cut(s)	272
BspT107I	GGYRCC	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	493
BsrBI	CCGCTC	1 cut(s)	97
BsrI	ACTGG	5 cut(s)	228, 237, 287, 384, 475
BssMI	GATC	2 cut(s)	76, 189
BssSI	CACGAG	1 cut(s)	438
Bst2BI	CACGAG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	64, 170
Bst6I	CTCTTC	3 cut(s)	272, 492, 498
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstDEI	CTNAG	2 cut(s)	217, 312
BstF5I	GGATG	3 cut(s)	208, 301, 433
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	2 cut(s)	79, 192
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	2 cut(s)	76, 189
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 94, 227, 332, 357
BstV1I	GCAGC	4 cut(s)	18, 100, 127, 322
BstV2I	GAAGAC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BsuI	GTATCC	1 cut(s)	617
BsuRI	GGCC	2 cut(s)	360, 467
BtsCI	GGATG	3 cut(s)	208, 301, 433
BtsI	GCAGTG	1 cut(s)	107
BtsIMutI	CAGTG	5 cut(s)	107, 221, 230, 280, 468
CfoI	GCGC	1 cut(s)	208
CseI	GACGC	1 cut(s)	432
Csp6I	GTAC	2 cut(s)	171, 309
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	3 cut(s)	92, 332, 356
CviJI	RGCY	6 cut(s)	43, 140, 351, 360, 467, 607
CviKI_1	RGCY	6 cut(s)	43, 140, 351, 360, 467, 607
CviQI	GTAC	2 cut(s)	171, 309
DdeI	CTNAG	2 cut(s)	217, 312
DpnI	GATC	2 cut(s)	78, 191
DpnII	GATC	2 cut(s)	76, 189
EaeI	YGGCCR	1 cut(s)	465
Eam1104I	CTCTTC	3 cut(s)	272, 492, 498
EarI	CTCTTC	3 cut(s)	272, 492, 498
EciI	GGCGGA	2 cut(s)	133, 548
Eco31I	GGTCTC	1 cut(s)	493
Eco32I	GATATC	1 cut(s)	301
EcoRV	GATATC	1 cut(s)	301
FaeI	CATG	3 cut(s)	95, 335, 359
FaiI	YATR	7 cut(s)	93, 241, 243, 249, 333, 357, 584
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	3 cut(s)	91, 331, 355
Fnu4HI	GCNGC	4 cut(s)	32, 89, 141, 336
FokI	GGATG	3 cut(s)	195, 308, 440
Fsp4HI	GCNGC	4 cut(s)	32, 89, 141, 336
FspBI	CTAG	3 cut(s)	51, 414, 588
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	4 cut(s)	32, 89, 141, 336
GsaI	CCCAGC	1 cut(s)	147
GsuI	CTGGAG	2 cut(s)	101, 401
HaeIII	GGCC	2 cut(s)	360, 467
HgaI	GACGC	1 cut(s)	432
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	3 cut(s)	95, 335, 359
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	3 cut(s)	457, 524, 634
HphI	GGTGA	3 cut(s)	28, 263, 466
Hpy166II	GTNNAC	2 cut(s)	19, 107
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	3 cut(s)	51, 80, 419
Hpy8I	GTNNAC	2 cut(s)	19, 107
Hpy99I	CGWCG	1 cut(s)	532
HpyAV	CCTTC	2 cut(s)	341, 506
HpyCH4III	ACNGT	2 cut(s)	64, 170
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 94, 227, 332, 357
HpyF3I	CTNAG	2 cut(s)	217, 312
HpySE526I	ACGT	1 cut(s)	103
Hsp92II	CATG	3 cut(s)	95, 335, 359
HspAI	GCGC	1 cut(s)	206
Kzo9I	GATC	2 cut(s)	76, 189
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	2 cut(s)	137, 331
Lsp1109I	GCAGC	4 cut(s)	18, 100, 127, 322
LweI	GCATC	3 cut(s)	44, 217, 418
MaeI	CTAG	3 cut(s)	51, 414, 588
MaeII	ACGT	1 cut(s)	103
MalI	GATC	2 cut(s)	78, 191
MbiI	CCGCTC	1 cut(s)	97
MboI	GATC	2 cut(s)	76, 189
MboII	GAAGA	8 cut(s)	58, 259, 402, 509, 515, 569, 605, 623
MfeI	CAATTG	1 cut(s)	461
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	2 cut(s)	198, 439
MlsI	TGGCCA	1 cut(s)	467
MluCI	AATT	3 cut(s)	45, 461, 479
MluNI	TGGCCA	1 cut(s)	467
MlyI	GAGTC	1 cut(s)	643
MnlI	CCTC	9 cut(s)	78, 114, 196, 226, 371, 376, 417, 493, 514
Mox20I	TGGCCA	1 cut(s)	467
MscI	TGGCCA	1 cut(s)	467
MseI	TTAA	2 cut(s)	177, 365
Msp20I	TGGCCA	1 cut(s)	467
MunI	CAATTG	1 cut(s)	461
MwoI	GCNNNNNNNGC	5 cut(s)	40, 94, 227, 332, 357
NdeII	GATC	2 cut(s)	76, 189
NlaIII	CATG	3 cut(s)	95, 335, 359
NlaIV	GGNNCC	2 cut(s)	237, 373
PciSI	GCTCTTC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	457, 524
PkrI	GCNGC	4 cut(s)	33, 90, 142, 337
PleI	GAGTC	1 cut(s)	642
PpsI	GAGTC	1 cut(s)	642
Psp1406I	AACGTT	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	143
PspN4I	GGNNCC	2 cut(s)	237, 373
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	2 cut(s)	172, 310
RsaNI	GTAC	2 cut(s)	171, 309
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	177, 365
SatI	GCNGC	4 cut(s)	32, 89, 141, 336
Sau3AI	GATC	2 cut(s)	76, 189
ScaI	AGTACT	1 cut(s)	172
SchI	GAGTC	1 cut(s)	643
SduI	GDGCHC	2 cut(s)	198, 439
SetI	ASST	9 cut(s)	18, 27, 45, 106, 125, 142, 218, 517, 609
SfaNI	GCATC	3 cut(s)	44, 217, 418
Sse9I	AATT	3 cut(s)	45, 461, 479
SsiI	CCGC	4 cut(s)	97, 118, 533, 569
SspMI	CTAG	3 cut(s)	51, 414, 588
TaaI	ACNGT	2 cut(s)	64, 170
TaiI	ACGT	1 cut(s)	106
TaqI	TCGA	2 cut(s)	192, 527
TaqII	GACCGA	1 cut(s)	475
TasI	AATT	3 cut(s)	45, 461, 479
TatI	WGTACW	1 cut(s)	170
TfiI	GAWTC	2 cut(s)	457, 524
Tru1I	TTAA	2 cut(s)	177, 365
Tru9I	TTAA	2 cut(s)	177, 365
TscAI	CASTG	5 cut(s)	114, 228, 237, 287, 475
TseI	GCWGC	4 cut(s)	31, 88, 140, 335
TspDTI	ATGAA	1 cut(s)	570
TspGWI	ACGGA	1 cut(s)	215
TspRI	CASTG	5 cut(s)	114, 228, 237, 287, 475
XbaI	TCTAGA	1 cut(s)	50
XspI	CTAG	3 cut(s)	51, 414, 588
ZrmI	AGTACT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.