Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0004399

Physical Location & Seq

Genomic Coordinates Reverse (-)

1998663 .. 2001867

Gene Structure 3205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG029100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2523 bp

ATGTCCACCGGAACCAACATTGTTTTCTTTCTCGCTTTTGTGTCTTCCTTCCTAAGTTTTGGCCTGCAAGCGGCGAGCCCGGACTCGTTGATGCTCGGCTGTGGCTCAGAAAATGAAGCCACAGATGCAGACGGGCGAAAATGGTTACCAGACTCCAAGTTTGTTACTGCTTCGAATTCCGTTCAGGCCCAAGCTCAGTACCAAGACCCTGCACTCAGTTCCGAGATCCCATACATGAAGGCCAGGATCTTCACCTCAAATGCCACGTACAAGTTGCCGGCCAAATCTAAGCAAAGCGCCTCAATCACTTGCAAGGCGACCACGCAAGCTTATATCGTAAGAGAGTATTCCGTGGCTCCACTCACCAAGGATGATCTGGAACTCACATTTTCGGTCAACACAGGTTTTGCCTTTGTCAATGGCATTGAGTTTGTCCCCGCCCCAGATGACTTGTTCGACCAGGCTACGCTTGTTGGAAATCCGGATCAGTCCTTCGACAGCAAGAGCTCGAATTTGCAGACATTGTATAGGTTGAACGTCGGTGGGAGTTCCATTCCACCAACCAAGGACTCTGGCTCCTTAGGAAGGACTTGGTATGATGACAGTAGTTATCTATTTGGTGCTAATACTGGGGTCCCCAATCTGGCTGACAATAAGACGAAAATTGAGTACAAAGATATCCCAGACTATTCTGCTCCTGTTGATATTTACACCACTGCAAGATCAATGGGTCCTAATGGGTCTGTAAATATAAATAGCAACCTCACATGGATGTTCAACCAGGTTGATACCAAGTACATGTACATTGTGAGGCTACACTTTTGCGACAATAAAAACACCAAAGCGAATCAGGTTGTATTCACCATTTACATTAACAACCAAACCGCGGAGTCTGCAGCCGATGTGATCGGATGGTCAGGAGGGATCGGAAAAGCTGCATACAGAGACTACGCGACAATACTTGATGAAAAGAGTGGTGGCGACCTTTGGCTAACTTTGCATCCTAATCCGGATTCAAAACCACAGTACTATGATACACTGCTCAACGGCGTGGAGATATTCAAGCTTGAAACTGGTAAAAGTTTGGCCGGTCCTAATCCCAAGCCTTCGGAAATGTTGGAAAAGAACGAGGAAGAGCAAAAGAAAAACTTCGAAAATCAAAAGGATAAGGAAACGGGTTCAAACAAAGCTCATGTGATTGGTGGAGCCGCAGGAGGAGCTGCAGCTGCTGGGATAGTGGCTGCATTGTGCATTGCTGTGTACCAAAGGAAGAAGCGAGTCCAAGGAACTGAATCACATACTAATAGCTGGCTTCCAATTTATGGCAACTCGCACACTAGTGGCACAAAATCCACAGGTTCGGGCAGGAGTAACGGTAGCAGACACCTATCGTCAGCTGCTCAAGGCCGGTGCAGGCGCTTCTCATTTGTTGAGATGAAACAGGCCACCAAGAATTTTGATGAGACTAATGTGATTGGTGTTGGAGGGTTTGGGAAGGTGTACAAGGGAGTTATTGACAATGGAGCTACCAAAGTGGCCATCAAGAGGTCTAACCCTCAATCCGAACAAGGAGTACACGAATTCCAGACCGAAATTGAGATGCTTTCGGAGTTGAGGCACAAGCATTTGGTTTCTCTCATTGGATTCTGTGAGGAAGACAATGAAATGTGCTTGGTTTATGACTACATGTCACGCGGCACACTTAGAGAGCACATTTACAAGGGCAACAAGACTCATTTGTCATGGAAGCAAAGGCTGGAGATTTGCATTGGAGCAGCTAAAGGACTTCACTACCTTCACACAGGGGCAAGATGGACAATCATTCATAGAGATGTCAAAACAACAAACATTCTCTTGGATGAGAATTGGGAGGCTAAGGTCTCTGATTTCGGGCTCTCGAAAACTGGCCCAGACTTGAACAAGGGTCACGTTAGCACAGTAGTGAAGGGTAGCTTTGGGTATTTGGATCCTGAATACTTCAAAAGACAACAACTGACTGAAAAATCTGATGTCTACTCCTTTGGGGTTGTCCTATTTGAGGTGTTGTGTGCAAGGCCTGCTCTAAATCCAAACCTTCCAAAAGAACAGGTTAGTCTAGCAGATTGGGCACTACATTGCCAAAAGAAAGGGATTCTAGAAGAAATCATTGACCCTCATTTGAAGGGCAAAGTGAACATGGAAAGCATCAATAAATTTGCAGACACAGCGGAGAAGTGCTTGTCTGAGTGCGGAGTTGATCGCCCGAGTTTGAATGACATCTTGTGGAACCTTGAGTTTGCTCTCCAGTTGCAGGAGGGGACAGATAGTGGGTCGACAGGATTGGCGTCACGAACCCGATCCGACTCCGATGATGCTAGTTTGAGAAACCAGCACATGATGGCCATACATTACAGCAACCTCAGTCTTGGAAGTGAGAGTGAAATAGGGGAAGAACAACCACCACCATCATCCAATAACAACGAAGCCACCCCCGATAATGATAGCGCAATCTTCTCGCAGATTGTCAATCCGACGGGTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016324 GO:0030427 GO:0035838 GO:0042995 GO:0044425 GO:0044459 GO:0044463 GO:0044464 GO:0045177 GO:0051286 GO:0071944 GO:0090404 GO:0090406 GO:0098590 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

840

Amino Acids

92.29

Weight (kDa)

5.88

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	103 - 355	1.5e-18	Malectin-like domain
Pkinase	PF00069	488 - 754	7.5e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	490 - 703	3.5e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04690 AT5G28680 AT5G28680
fragaria_vesca	FvH4_4g19690 FvH4_6g02670
malus_domestica	MD04G1226200.v1.1 MD12G1243300.v1.1 MD13G1154700.v1.1
prunus_persica	Prupe.1G117700_v2.0.a1 Prupe.6G345000_v2.0.a1
pyrus_communis	pycom04g19940 pycom13g13150
rosa_chinensis	RchiOBHm_Chr3g0450621 RchiOBHm_Chr4g0425141
rosa_laevigata	RLG00000007395 RLG00000025717
rosa_multiflora	Rmu_sc0000078.1_g000041 Rmu_ssc0000420.1_g000041
rosa_roxburghii	Rroxscaffold_5G00367230 Rroxscaffold_6G00428300
rosa_rugosa	Rorug02G0629100 Rorug04G0201800
rosa_samantha	Rh3AG029800 Rh3BG030200 Rh3CG029100 Rh3DG029900 Rh4AG258400 Rh4BG264200 Rh4CG275300 Rh4DG260300
rosa_wichuraiana	Rw3G002300 Rw4G022370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1738
AccB7I	CCANNNNNTGG	1 cut(s)	1322
AccI	GTMKAC	2 cut(s)	2013, 2312
AccII	CGCG	3 cut(s)	887, 953, 1695
AccIII	TCCGGA	2 cut(s)	481, 1009
AciI	CCGC	8 cut(s)	71, 438, 885, 887, 1209, 1695, 2207, 2229
AclWI	GGATC	7 cut(s)	220, 254, 492, 932, 1961, 1974, 2331
AcoI	YGGCCR	4 cut(s)	279, 1086, 1536, 2379
AcsI	RAATTY	5 cut(s)	175, 511, 1453, 1580, 2192
AcyI	GRCGYC	1 cut(s)	2324
AfaI	GTAC	9 cut(s)	200, 269, 671, 797, 803, 1028, 1262, 1502, 1575
AfiI	CCNNNNNNNGG	8 cut(s)	70, 585, 643, 886, 1322, 1545, 2038, 2290
AflIII	ACRYGT	2 cut(s)	798, 1686
AhdI	GACNNNNNGTC	1 cut(s)	1687
AhlI	ACTAGT	1 cut(s)	1337
AjnI	CCWGG	3 cut(s)	242, 459, 780
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AleI	CACNNNNGTG	2 cut(s)	1338, 1940
Alw21I	GWGCWC	2 cut(s)	509, 1713
Alw26I	GTCTC	3 cut(s)	939, 1457, 1885
AlwI	GGATC	7 cut(s)	220, 254, 492, 932, 1961, 1974, 2331
AlwNI	CAGNNNCTG	1 cut(s)	1229
Ama87I	CYCGRG	1 cut(s)	2242
Aor13HI	TCCGGA	2 cut(s)	481, 1009
ApeKI	GCWGC	8 cut(s)	896, 935, 1220, 1223, 1226, 1241, 1397, 1775
ApoI	RAATTY	5 cut(s)	175, 511, 1453, 1580, 2192
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
Asp700I	GAANNNNTTC	1 cut(s)	1148
AspLEI	GCGC	3 cut(s)	299, 1419, 2486
AspS9I	GGNCC	5 cut(s)	187, 634, 731, 1091, 1907
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	3 cut(s)	244, 355, 853
AsuII	TTCGAA	2 cut(s)	173, 1152
AvaI	CYCGRG	1 cut(s)	2242
AvaII	GGWCC	3 cut(s)	634, 731, 1091
AxyI	CCTNAGG	1 cut(s)	580
BaeGI	GKGCMC	1 cut(s)	2110
BalI	TGGCCA	2 cut(s)	1538, 2381
BamHI	GGATCC	1 cut(s)	1966
BanII	GRGCYC	3 cut(s)	80, 509, 1896
BbsI	GAAGAC	2 cut(s)	36, 1662
Bbv12I	GWGCWC	2 cut(s)	509, 1713
BbvI	GCAGC	8 cut(s)	908, 922, 1207, 1213, 1228, 1235, 1384, 1787
BccI	CCATC	5 cut(s)	906, 1547, 1806, 2371, 2452
BceAI	ACGGC	1 cut(s)	1063
BcgI	CGANNNNNNTGC	2 cut(s)	2475, 2509
BciT130I	CCWGG	3 cut(s)	244, 461, 782
BcnI	CCSGG	1 cut(s)	80
BcoDI	GTCTC	3 cut(s)	939, 1457, 1885
BcuI	ACTAGT	1 cut(s)	1337
BfaI	CTAG	4 cut(s)	1338, 2096, 2135, 2355
BfmI	CTRYAG	2 cut(s)	894, 1221
BfoI	RGCGCY	2 cut(s)	300, 1420
BmcAI	AGTACT	1 cut(s)	1028
Bme1390I	CCNGG	4 cut(s)	80, 244, 461, 782
Bme18I	GGWCC	3 cut(s)	634, 731, 1091
BmeRI	GACNNNNNGTC	1 cut(s)	1687
BmeT110I	CYCGRG	1 cut(s)	2242
BmgT120I	GGNCC	5 cut(s)	187, 634, 731, 1091, 1907
BmiI	GGNNCC	9 cut(s)	13, 357, 577, 635, 636, 732, 1207, 1968, 2267
BmrFI	CCNGG	4 cut(s)	80, 244, 461, 782
BmrI	ACTGGG	1 cut(s)	639
BmsI	GCATC	6 cut(s)	81, 115, 1009, 1590, 2193, 2341
BmuI	ACTGGG	1 cut(s)	639
BpiI	GAAGAC	2 cut(s)	36, 1662
BpmI	CTGGAG	2 cut(s)	1778, 2267
Bpu10I	CCTNAGC	1 cut(s)	1875
Bpu14I	TTCGAA	2 cut(s)	173, 1152
BpuEI	CTTGAG	2 cut(s)	1386, 2291
BpuMI	CCSGG	1 cut(s)	80
BsaAI	YACGTR	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	2324
BsaI	GGTCTC	1 cut(s)	1885
BsaJI	CCNNGG	5 cut(s)	351, 366, 564, 885, 1282
BsaWI	WCCGGW	3 cut(s)	8, 481, 1009
BsaXI	ACNNNNNCTCC	4 cut(s)	560, 590, 1360, 1390
Bsc4I	CCNNNNNNNGG	8 cut(s)	70, 585, 643, 886, 1322, 1545, 2038, 2290
Bse118I	RCCGGY	3 cut(s)	277, 1088, 1407
Bse1I	ACTGG	4 cut(s)	634, 1078, 1909, 2284
Bse21I	CCTNAGG	1 cut(s)	580
Bse3DI	GCAATG	2 cut(s)	1251, 2113
BseAI	TCCGGA	2 cut(s)	481, 1009
BseBI	CCWGG	3 cut(s)	244, 461, 782
BseDI	CCNNGG	5 cut(s)	351, 366, 564, 885, 1282
BseGI	GGATG	6 cut(s)	376, 777, 917, 1000, 1864, 2447
BseLI	CCNNNNNNNGG	8 cut(s)	70, 585, 643, 886, 1322, 1545, 2038, 2290
BseMI	GCAATG	2 cut(s)	1251, 2113
BseMII	CTCAG	5 cut(s)	120, 209, 229, 2214, 2413
BseNI	ACTGG	4 cut(s)	634, 1078, 1909, 2284
BseRI	GAGGAG	1 cut(s)	1230
BseSI	GKGCMC	1 cut(s)	2110
BseXI	GCAGC	8 cut(s)	908, 922, 1207, 1213, 1228, 1235, 1384, 1787
BseYI	CCCAGC	1 cut(s)	1229
BsgI	GTGCAG	2 cut(s)	195, 1432
Bsh1236I	CGCG	3 cut(s)	887, 953, 1695
BsiHKAI	GWGCWC	2 cut(s)	509, 1713
BsiHKCI	CYCGRG	1 cut(s)	2242
BsiSI	CCGG	7 cut(s)	9, 80, 278, 482, 1010, 1089, 1408
BslFI	GGGAC	3 cut(s)	419, 620, 2311
BslI	CCNNNNNNNGG	8 cut(s)	70, 585, 643, 886, 1322, 1545, 2038, 2290
BsmAI	GTCTC	3 cut(s)	939, 1457, 1885
BsmFI	GGGAC	3 cut(s)	419, 620, 2311
Bso31I	GGTCTC	1 cut(s)	1885
BsoBI	CYCGRG	1 cut(s)	2242
Bsp119I	TTCGAA	2 cut(s)	173, 1152
Bsp1286I	GDGCHC	5 cut(s)	80, 509, 1713, 1896, 2110
Bsp13I	TCCGGA	2 cut(s)	481, 1009
Bsp1407I	TGTACA	2 cut(s)	801, 1500
BspACI	CCGC	8 cut(s)	71, 438, 885, 887, 1209, 1695, 2207, 2229
BspCNI	CTCAG	5 cut(s)	119, 208, 228, 2215, 2412
BspEI	TCCGGA	2 cut(s)	481, 1009
BspFNI	CGCG	3 cut(s)	887, 953, 1695
BspLI	GGNNCC	9 cut(s)	13, 357, 577, 635, 636, 732, 1207, 1968, 2267
BspMAI	CTGCAG	2 cut(s)	898, 1225
BspPI	GGATC	7 cut(s)	220, 254, 492, 932, 1961, 1974, 2331
BspQI	GCTCTTC	1 cut(s)	1128
BspT104I	TTCGAA	2 cut(s)	173, 1152
BspTNI	GGTCTC	1 cut(s)	1885
BsrDI	GCAATG	2 cut(s)	1251, 2113
BsrFI	RCCGGY	3 cut(s)	277, 1088, 1407
BsrGI	TGTACA	2 cut(s)	801, 1500
BsrI	ACTGG	4 cut(s)	634, 1078, 1909, 2284
BssAI	RCCGGY	3 cut(s)	277, 1088, 1407
BssECI	CCNNGG	5 cut(s)	351, 366, 564, 885, 1282
BssNI	GRCGYC	1 cut(s)	2324
BssT1I	CCWWGG	3 cut(s)	366, 564, 1282
Bst2UI	CCWGG	3 cut(s)	244, 461, 782
Bst4CI	ACNGT	4 cut(s)	605, 1026, 1376, 1939
Bst6I	CTCTTC	1 cut(s)	1128
BstACI	GRCGYC	1 cut(s)	2324
BstAPI	GCANNNNNTGC	1 cut(s)	2057
BstAUI	TGTACA	2 cut(s)	801, 1500
BstBAI	YACGTR	1 cut(s)	267
BstBI	TTCGAA	2 cut(s)	173, 1152
BstC8I	GCNNGC	8 cut(s)	65, 69, 76, 279, 327, 1310, 1415, 2058
BstDSI	CCRYGG	2 cut(s)	351, 885
BstEII	GGTNACC	1 cut(s)	144
BstENI	CCTNNNNNAGG	2 cut(s)	583, 2036
BstF5I	GGATG	6 cut(s)	376, 777, 917, 1000, 1864, 2447
BstFNI	CGCG	3 cut(s)	887, 953, 1695
BstH2I	RGCGCY	2 cut(s)	300, 1420
BstHHI	GCGC	3 cut(s)	299, 1419, 2486
BstMAI	GTCTC	3 cut(s)	939, 1457, 1885
BstMWI	GCNNNNNNNGC	8 cut(s)	125, 893, 997, 1217, 1226, 2057, 2105, 2204
BstNI	CCWGG	3 cut(s)	244, 461, 782
BstNSI	RCATGY	2 cut(s)	802, 1690
BstPI	GGTNACC	1 cut(s)	144
BstSCI	CCNGG	4 cut(s)	78, 242, 459, 780
BstSFI	CTRYAG	2 cut(s)	894, 1221
BstSLI	GKGCMC	1 cut(s)	2110
BstUI	CGCG	3 cut(s)	887, 953, 1695
BstV1I	GCAGC	8 cut(s)	908, 922, 1207, 1213, 1228, 1235, 1384, 1787
BstV2I	GAAGAC	2 cut(s)	36, 1662
BstX2I	RGATCY	3 cut(s)	225, 246, 1966
BstYI	RGATCY	3 cut(s)	225, 246, 1966
Bsu36I	CCTNAGG	1 cut(s)	580
BtgI	CCRYGG	2 cut(s)	351, 885
BtsCI	GGATG	6 cut(s)	376, 777, 917, 1000, 1864, 2447
BtsI	GCAGTG	2 cut(s)	714, 1037
BtsIMutI	CAGTG	2 cut(s)	714, 1037
Cac8I	GCNNGC	8 cut(s)	65, 69, 76, 279, 327, 1310, 1415, 2058
CaiI	CAGNNNCTG	1 cut(s)	1229
CfoI	GCGC	3 cut(s)	299, 1419, 2486
Cfr10I	RCCGGY	3 cut(s)	277, 1088, 1407
Cfr13I	GGNCC	5 cut(s)	187, 634, 731, 1091, 1907
Cfr42I	CCGCGG	1 cut(s)	888
CseI	GACGC	1 cut(s)	2313
CsiI	ACCWGGT	1 cut(s)	780
Csp6I	GTAC	9 cut(s)	199, 268, 670, 796, 802, 1027, 1261, 1501, 1574
CviAII	CATG	8 cut(s)	235, 768, 799, 1193, 1687, 1743, 2176, 2374
CviQI	GTAC	9 cut(s)	199, 268, 670, 796, 802, 1027, 1261, 1501, 1574
DrdI	GACNNNNNNGTC	1 cut(s)	1738
DriI	GACNNNNNGTC	1 cut(s)	1687
DseDI	GACNNNNNNGTC	1 cut(s)	1738
EaeI	YGGCCR	4 cut(s)	279, 1086, 1536, 2379
Eam1104I	CTCTTC	1 cut(s)	1128
Eam1105I	GACNNNNNGTC	1 cut(s)	1687
EarI	CTCTTC	1 cut(s)	1128
Ecl136II	GAGCTC	1 cut(s)	507
Eco130I	CCWWGG	3 cut(s)	366, 564, 1282
Eco147I	AGGCCT	1 cut(s)	2056
Eco24I	GRGCYC	3 cut(s)	80, 509, 1896
Eco31I	GGTCTC	1 cut(s)	1885
Eco32I	GATATC	1 cut(s)	679
Eco47I	GGWCC	3 cut(s)	634, 731, 1091
Eco53kI	GAGCTC	1 cut(s)	507
Eco81I	CCTNAGG	1 cut(s)	580
Eco88I	CYCGRG	1 cut(s)	2242
Eco91I	GGTNACC	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	507
EcoNI	CCTNNNNNAGG	2 cut(s)	583, 2036
EcoO109I	RGGNCCY	2 cut(s)	634, 731
EcoO65I	GGTNACC	1 cut(s)	144
EcoRI	GAATTC	2 cut(s)	175, 1580
EcoRII	CCWGG	3 cut(s)	242, 459, 780
EcoRV	GATATC	1 cut(s)	679
EcoT14I	CCWWGG	3 cut(s)	366, 564, 1282
EcoT38I	GRGCYC	3 cut(s)	80, 509, 1896
ErhI	CCWWGG	3 cut(s)	366, 564, 1282
FaeI	CATG	8 cut(s)	238, 771, 802, 1196, 1690, 1746, 2179, 2377
FalI	AAGNNNNNCTT	4 cut(s)	1133, 1165, 1937, 1969
FaqI	GGGAC	3 cut(s)	419, 620, 2311
FatI	CATG	8 cut(s)	234, 767, 798, 1192, 1686, 1742, 2175, 2373
FauI	CCCGC	1 cut(s)	445
FblI	GTMKAC	2 cut(s)	2013, 2312
FokI	GGATG	6 cut(s)	383, 784, 924, 987, 1871, 2434
FriOI	GRGCYC	3 cut(s)	80, 509, 1896
FspBI	CTAG	4 cut(s)	1338, 2096, 2135, 2355
GlaI	GCGC	3 cut(s)	298, 1418, 2485
GsaI	CCCAGC	1 cut(s)	1233
GsuI	CTGGAG	2 cut(s)	1778, 2267
HaeII	RGCGCY	2 cut(s)	300, 1420
HapII	CCGG	7 cut(s)	9, 80, 278, 482, 1010, 1089, 1408
HgaI	GACGC	1 cut(s)	2313
HhaI	GCGC	3 cut(s)	299, 1419, 2486
Hin1I	GRCGYC	1 cut(s)	2324
Hin1II	CATG	8 cut(s)	238, 771, 802, 1196, 1690, 1746, 2179, 2377
Hin6I	GCGC	3 cut(s)	297, 1417, 2484
HinP1I	GCGC	3 cut(s)	297, 1417, 2484
HincII	GTYRAC	2 cut(s)	397, 2313
HindII	GTYRAC	2 cut(s)	397, 2313
HindIII	AAGCTT	2 cut(s)	327, 1064
HpaII	CCGG	7 cut(s)	9, 80, 278, 482, 1010, 1089, 1408
HphI	GGTGA	3 cut(s)	244, 355, 853
Hpy166II	GTNNAC	8 cut(s)	6, 397, 1261, 1501, 1576, 2014, 2173, 2313
Hpy8I	GTNNAC	8 cut(s)	6, 397, 1261, 1501, 1576, 2014, 2173, 2313
Hpy99I	CGWCG	2 cut(s)	542, 2515
HpyCH4III	ACNGT	4 cut(s)	605, 1026, 1376, 1939
HpyCH4IV	ACGT	3 cut(s)	266, 537, 1929
HpyF10VI	GCNNNNNNNGC	8 cut(s)	125, 893, 997, 1217, 1226, 2057, 2105, 2204
HpySE526I	ACGT	3 cut(s)	266, 537, 1929
Hsp92I	GRCGYC	1 cut(s)	2324
Hsp92II	CATG	8 cut(s)	238, 771, 802, 1196, 1690, 1746, 2179, 2377
HspAI	GCGC	3 cut(s)	297, 1417, 2484
KflI	GGGWCCC	1 cut(s)	634
Kpn2I	TCCGGA	2 cut(s)	481, 1009
KroI	GCCGGC	1 cut(s)	277
KroNI	GCCGGC	1 cut(s)	279
KspI	CCGCGG	1 cut(s)	888
LguI	GCTCTTC	1 cut(s)	1128
LmnI	GCTCC	7 cut(s)	361, 581, 700, 1205, 1217, 1523, 1772
Lsp1109I	GCAGC	8 cut(s)	908, 922, 1207, 1213, 1228, 1235, 1384, 1787
LweI	GCATC	6 cut(s)	81, 115, 1009, 1590, 2193, 2341
MabI	ACCWGGT	1 cut(s)	780
MaeI	CTAG	4 cut(s)	1338, 2096, 2135, 2355
MaeII	ACGT	3 cut(s)	266, 537, 1929
MaeIII	GTNAC	6 cut(s)	144, 163, 1370, 1689, 1925, 2325
MboII	GAAGA	8 cut(s)	36, 241, 1145, 1282, 1667, 2150, 2441, 2482
MflI	RGATCY	3 cut(s)	225, 246, 1966
MhlI	GDGCHC	5 cut(s)	80, 509, 1713, 1896, 2110
MlsI	TGGCCA	2 cut(s)	1538, 2381
MluCI	AATT	9 cut(s)	175, 511, 663, 1317, 1453, 1580, 1593, 1864, 2192
MluNI	TGGCCA	2 cut(s)	1538, 2381
MlyI	GAGTC	7 cut(s)	77, 146, 563, 899, 1287, 1726, 2336
MmeI	TCCRAC	4 cut(s)	454, 1098, 1462, 2364
Mox20I	TGGCCA	2 cut(s)	1538, 2381
MroI	TCCGGA	2 cut(s)	481, 1009
MroNI	GCCGGC	1 cut(s)	277
MroXI	GAANNNNTTC	1 cut(s)	1148
MscI	TGGCCA	2 cut(s)	1538, 2381
MseI	TTAA	1 cut(s)	873
MslI	CAYNNNNRTG	5 cut(s)	770, 1256, 1338, 1830, 1940
Msp20I	TGGCCA	2 cut(s)	1538, 2381
MspA1I	CMGCKG	4 cut(s)	887, 1226, 1397, 2207
MspI	CCGG	7 cut(s)	9, 80, 278, 482, 1010, 1089, 1408
MspR9I	CCNGG	4 cut(s)	80, 244, 461, 782
MvaI	CCWGG	3 cut(s)	244, 461, 782
MvnI	CGCG	3 cut(s)	887, 953, 1695
MwoI	GCNNNNNNNGC	8 cut(s)	125, 893, 997, 1217, 1226, 2057, 2105, 2204
NaeI	GCCGGC	1 cut(s)	279
NciI	CCSGG	1 cut(s)	80
NgoMIV	GCCGGC	1 cut(s)	277
NlaIII	CATG	8 cut(s)	238, 771, 802, 1196, 1690, 1746, 2179, 2377
NlaIV	GGNNCC	9 cut(s)	13, 357, 577, 635, 636, 732, 1207, 1968, 2267
NmeAIII	GCCGAG	1 cut(s)	75
NmuCI	GTSAC	3 cut(s)	1689, 1925, 2325
NspI	RCATGY	2 cut(s)	802, 1690
NspV	TTCGAA	2 cut(s)	173, 1152
OliI	CACNNNNGTG	2 cut(s)	1338, 1940
PceI	AGGCCT	1 cut(s)	2056
PciI	ACATGT	2 cut(s)	798, 1686
PciSI	GCTCTTC	1 cut(s)	1128
PdiI	GCCGGC	1 cut(s)	279
PdmI	GAANNNNTTC	1 cut(s)	1148
PfeI	GAWTC	5 cut(s)	847, 1013, 1292, 1644, 2131
PflMI	CCANNNNNTGG	1 cut(s)	1322
PleI	GAGTC	7 cut(s)	77, 146, 563, 898, 1286, 1726, 2336
PpsI	GAGTC	7 cut(s)	77, 146, 563, 898, 1286, 1726, 2336
Ppu21I	YACGTR	1 cut(s)	267
PpuMI	RGGWCCY	2 cut(s)	634, 731
PscI	ACATGT	2 cut(s)	798, 1686
Psp124BI	GAGCTC	1 cut(s)	509
Psp5II	RGGWCCY	2 cut(s)	634, 731
Psp6I	CCWGG	3 cut(s)	242, 459, 780
PspEI	GGTNACC	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	1229
PspGI	CCWGG	3 cut(s)	242, 459, 780
PspN4I	GGNNCC	9 cut(s)	13, 357, 577, 635, 636, 732, 1207, 1968, 2267
PspPI	GGNCC	5 cut(s)	187, 634, 731, 1091, 1907
PspPPI	RGGWCCY	2 cut(s)	634, 731
PsrI	GAACNNNNNNTAC	2 cut(s)	1557, 1589
PstI	CTGCAG	2 cut(s)	898, 1225
PstNI	CAGNNNCTG	1 cut(s)	1229
PsuI	RGATCY	3 cut(s)	225, 246, 1966
PvuII	CAGCTG	2 cut(s)	1226, 1397
RsaI	GTAC	9 cut(s)	200, 269, 671, 797, 803, 1028, 1262, 1502, 1575
RsaNI	GTAC	9 cut(s)	199, 268, 670, 796, 802, 1027, 1261, 1501, 1574
RseI	CAYNNNNRTG	5 cut(s)	770, 1256, 1338, 1830, 1940
SacI	GAGCTC	1 cut(s)	509
SacII	CCGCGG	1 cut(s)	888
SalI	GTCGAC	1 cut(s)	2311
SapI	GCTCTTC	1 cut(s)	1128
SaqAI	TTAA	1 cut(s)	873
Sau96I	GGNCC	5 cut(s)	187, 634, 731, 1091, 1907
ScaI	AGTACT	1 cut(s)	1028
SchI	GAGTC	7 cut(s)	77, 146, 563, 899, 1287, 1726, 2336
ScrFI	CCNGG	4 cut(s)	80, 244, 461, 782
SduI	GDGCHC	5 cut(s)	80, 509, 1713, 1896, 2110
SexAI	ACCWGGT	1 cut(s)	780
SfaNI	GCATC	6 cut(s)	81, 115, 1009, 1590, 2193, 2341
SfcI	CTRYAG	2 cut(s)	894, 1221
Sfr303I	CCGCGG	1 cut(s)	888
SfuI	TTCGAA	2 cut(s)	173, 1152
SgrBI	CCGCGG	1 cut(s)	888
SinI	GGWCC	3 cut(s)	634, 731, 1091
SmiMI	CAYNNNNRTG	5 cut(s)	770, 1256, 1338, 1830, 1940
SmlI	CTYRAG	2 cut(s)	1401, 2270
SmoI	CTYRAG	2 cut(s)	1401, 2270
SpeI	ACTAGT	1 cut(s)	1337
Sse9I	AATT	9 cut(s)	175, 511, 663, 1317, 1453, 1580, 1593, 1864, 2192
SseBI	AGGCCT	1 cut(s)	2056
SsiI	CCGC	8 cut(s)	71, 438, 885, 887, 1209, 1695, 2207, 2229
SspMI	CTAG	4 cut(s)	1338, 2096, 2135, 2355
SstI	GAGCTC	1 cut(s)	509
StuI	AGGCCT	1 cut(s)	2056
StyD4I	CCNGG	4 cut(s)	78, 242, 459, 780
StyI	CCWWGG	3 cut(s)	366, 564, 1282
TaaI	ACNGT	4 cut(s)	605, 1026, 1376, 1939
TaiI	ACGT	3 cut(s)	269, 540, 1932
TaqI	TCGA	8 cut(s)	173, 456, 495, 509, 1152, 1898, 2312, 2518
TaqII	GACCGA	2 cut(s)	382, 1604
TasI	AATT	9 cut(s)	175, 511, 663, 1317, 1453, 1580, 1593, 1864, 2192
TatI	WGTACW	6 cut(s)	669, 795, 801, 1026, 1500, 1573
TauI	GCSGC	3 cut(s)	74, 1211, 1698
TfiI	GAWTC	5 cut(s)	847, 1013, 1292, 1644, 2131
Tru1I	TTAA	1 cut(s)	873
Tru9I	TTAA	1 cut(s)	873
TscAI	CASTG	2 cut(s)	721, 1044
TseFI	GTSAC	3 cut(s)	1689, 1925, 2325
TseI	GCWGC	8 cut(s)	896, 935, 1220, 1223, 1226, 1241, 1397, 1775
Tsp45I	GTSAC	3 cut(s)	1689, 1925, 2325
TspDTI	ATGAA	6 cut(s)	129, 251, 981, 1451, 1677, 1814
TspGWI	ACGGA	2 cut(s)	169, 340
TspRI	CASTG	2 cut(s)	721, 1044
Van91I	CCANNNNNTGG	1 cut(s)	1322
VpaK11BI	GGWCC	3 cut(s)	634, 731, 1091
XagI	CCTNNNNNAGG	2 cut(s)	583, 2036
XapI	RAATTY	5 cut(s)	175, 511, 1453, 1580, 2192
XbaI	TCTAGA	1 cut(s)	2134
XceI	RCATGY	2 cut(s)	802, 1690
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmiI	GTMKAC	2 cut(s)	2013, 2312
XmnI	GAANNNNTTC	1 cut(s)	1148
XspI	CTAG	4 cut(s)	1338, 2096, 2135, 2355
ZrmI	AGTACT	1 cut(s)	1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.