Rh4BG264200

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0004399
Physical Location & Seq
Reverse (-)
43804266 .. 43806851
2586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG264200.1

Sequence Viewer

Length: 1368 bp
ATGATCTCCAACACCCAGATCTTATTTTCTCTGATCTTGTTATCTCTATGCACCATTCAAGTTCTTAGCGCAGACTCAAAGTCTTCCAATCCCTACATACTTTATTGTGGCTCTTCAAACGGTGGCACCGATTCCGATGGCCGGAAATGGTCATCGGATTCCCAGTTTATTTCCGGGAATTCCACGACGGCGAGGGCCCAATACCAAGACCCTTCTCTTCCTTCCGAAATCCCATACATGTCTGCAAGAATCTTCACCTCTTCATCCTCATACAAATTCTCTGTTTCACCAAAGCAACGTCTTTGGCTCAGACTCCATTTCTACCCTTCTTCCTATAACAGCCTTGACAAATCCGACTCGTATTTTGATGTGACCGCAAATGGGTTTACTCTCCTCAACAATTTCAGCGCCTCCATCACAGCCGAAGCTCTCACGCAGGCCTACATTGTCAAAGAATTCTCACTCATTCCTGTCGAGTCCGGGAATCTCAACATCACGTTCACCCCCTCTTCGTCACATAAGAAATCATTTGCTTTTGTGAACGGGATTGAGGTGATACCTATGCCGGATATATTCCATCCAGCCAATTTGGTCGGATTCGATGAACAAACGGTCGATGTACAAAGCTCGACTCTCCAGACCATGTTTCGGCTCAATGTGGGTGGGCAGTATGTTGGGCCAGCCAACGACTCCGCCGGGCTTAACCGGACATGGTATGATGATTCGCCTTACTTGTTTGGTGCAGCATTTGGGGTCACATCTGAGGCTCAGAAGAATGTCTCGATTAGATACTCTAATAATGTGTCAGAATCTATTGCACCTGTTGATGTTTACACTTTTGTGAAAGATAAAGCTGGTGATGACGAACTGTGGGTGGCATTGCACCCATCTGTGTCAATGAAGCCTGAGTTCTATGATGCAATACTTAATGGATTGGAGGTCTTTAAGATCAATGATACTAGTGGCAACTTGGCAGGCCCCAACCCTGTGCCGTCTCAGATGCTTCAAGATGCTGAGGCGGCCGCGGCTGCGGCGAATAATCCCTCCCCACCGGCAGCAGGATCAAAGAATAAGGGTTTGGTAATTGGTGGAGTCACTGGTGGGGCTGCTGGTGTAGTTGTAGCTGCCGCGGTTGGCTTTGTTGTGTACCAAAGGAAGAAGAGATCACATGAGTCCGGGGTTGGGGCTTGGTTGCCGCTGTATGACGGGGAAAGAGTTGTAGCTGAAGTTAGAGCAAATGATGCTTATGCTATGCACAATGCCACTCTGGCCATTGAAGAAGAGAGCACTACTGCAAGTGTGCCTGTTGATGAGTTGACCAATAGTACTGTTGTTTTTTCACAGTTTGTGAATCAACAAGGAAGATGA

Protein Analysis

455

Amino Acids

48.97

Weight (kDa)

4.93

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 36 - 278 3.2e-17 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AccII CGCG 2 cut(s) 1025, 1130
AciI CCGC 9 cut(s) 375, 693, 1019, 1023, 1025, 1031, 1128, 1130, 1196
AclWI GGATC 1 cut(s) 1069
AcoI YGGCCR 3 cut(s) 139, 1020, 1269
AcsI RAATTY 3 cut(s) 178, 275, 455
AcuI CTGAAG 1 cut(s) 1245
AfaI GTAC 3 cut(s) 621, 1148, 1327
AfiI CCNNNNNNNGG 5 cut(s) 141, 381, 648, 1058, 1182
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 4 cut(s) 59, 117, 1007, 1277
AhdI GACNNNNNGTC 1 cut(s) 79
AhlI ACTAGT 1 cut(s) 959
AjuI GAANNNNNNNTTGG 2 cut(s) 1061, 1093
AleI CACNNNNGTG 1 cut(s) 839
AluBI AGCT 5 cut(s) 428, 627, 854, 1124, 1223
AluI AGCT 5 cut(s) 428, 627, 854, 1124, 1223
Alw21I GWGCWC 1 cut(s) 1289
Alw26I GTCTC 2 cut(s) 784, 999
AlwI GGATC 1 cut(s) 1069
AoxI GGCC 7 cut(s) 139, 195, 438, 677, 976, 1020, 1269
ApaI GGGCCC 1 cut(s) 199
ApeKI GCWGC 5 cut(s) 743, 1028, 1055, 1106, 1124
ApoI RAATTY 3 cut(s) 178, 275, 455
ArsI GACNNNNNNTTYG 2 cut(s) 347, 379
AspLEI GCGC 2 cut(s) 71, 410
AspS9I GGNCC 4 cut(s) 195, 196, 677, 977
AsuC2I CCSGG 4 cut(s) 175, 481, 697, 1177
AsuHPI GGTGA 5 cut(s) 247, 279, 493, 565, 869
BaeGI GKGCMC 1 cut(s) 199
BalI TGGCCA 1 cut(s) 1271
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 199
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 1289
BbvCI CCTCAGC 1 cut(s) 1014
BbvI GCAGC 5 cut(s) 755, 1015, 1067, 1093, 1111
BccI CCATC 4 cut(s) 131, 422, 585, 895
BceAI ACGGC 2 cut(s) 204, 976
BcnI CCSGG 4 cut(s) 175, 481, 697, 1177
BcoDI GTCTC 2 cut(s) 784, 999
BcuI ACTAGT 1 cut(s) 959
BfaI CTAG 1 cut(s) 960
BfoI RGCGCY 1 cut(s) 411
BglI GCCNNNNNGGC 1 cut(s) 1268
BglII AGATCT 1 cut(s) 18
BmcAI AGTACT 1 cut(s) 1327
Bme1390I CCNGG 4 cut(s) 175, 481, 697, 1177
BmeRI GACNNNNNGTC 1 cut(s) 79
BmgT120I GGNCC 4 cut(s) 195, 196, 677, 977
BmiI GGNNCC 3 cut(s) 127, 197, 979
BmrFI CCNGG 4 cut(s) 175, 481, 697, 1177
BmrI ACTGGG 1 cut(s) 157
BmsI GCATC 4 cut(s) 907, 990, 1000, 1231
BmuI ACTGGG 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 620
Bpu10I CCTNAGC 1 cut(s) 1014
BpuMI CCSGG 4 cut(s) 175, 481, 697, 1177
BsaJI CCNNGG 3 cut(s) 1023, 1128, 1176
BsaWI WCCGGW 1 cut(s) 705
Bsc4I CCNNNNNNNGG 5 cut(s) 141, 381, 648, 1058, 1182
Bse118I RCCGGY 1 cut(s) 1051
Bse1I ACTGG 2 cut(s) 163, 1102
Bse3DI GCAATG 1 cut(s) 878
BseDI CCNNGG 3 cut(s) 1023, 1128, 1176
BseGI GGATG 2 cut(s) 263, 577
BseLI CCNNNNNNNGG 5 cut(s) 141, 381, 648, 1058, 1182
BseMI GCAATG 1 cut(s) 878
BseMII CTCAG 6 cut(s) 322, 753, 782, 897, 1005, 1010
BseNI ACTGG 2 cut(s) 163, 1102
BseRI GAGGAG 1 cut(s) 383
BseSI GKGCMC 1 cut(s) 199
BseX3I CGGCCG 1 cut(s) 1020
BseXI GCAGC 5 cut(s) 755, 1015, 1067, 1093, 1111
BsgI GTGCAG 1 cut(s) 762
Bsh1236I CGCG 2 cut(s) 1025, 1130
Bsh1285I CGRYCG 2 cut(s) 615, 1023
BshFI GGCC 7 cut(s) 141, 197, 440, 679, 978, 1022, 1271
BshNI GGYRCC 1 cut(s) 125
BsiEI CGRYCG 2 cut(s) 615, 1023
BsiHKAI GWGCWC 1 cut(s) 1289
BsiSI CCGG 8 cut(s) 142, 174, 480, 566, 696, 706, 1052, 1176
BslI CCNNNNNNNGG 5 cut(s) 141, 381, 648, 1058, 1182
BsmAI GTCTC 2 cut(s) 784, 999
BsmBI CGTCTC 1 cut(s) 999
BsnI GGCC 7 cut(s) 141, 197, 440, 679, 978, 1022, 1271
Bsp120I GGGCCC 1 cut(s) 195
Bsp1286I GDGCHC 2 cut(s) 199, 1289
Bsp1407I TGTACA 1 cut(s) 619
Bsp143I GATC 6 cut(s) 3, 18, 33, 948, 1061, 1163
BspACI CCGC 9 cut(s) 375, 693, 1019, 1023, 1025, 1031, 1128, 1130, 1196
BspANI GGCC 7 cut(s) 141, 197, 440, 679, 978, 1022, 1271
BspCNI CTCAG 6 cut(s) 321, 754, 781, 898, 1006, 1009
BspFNI CGCG 2 cut(s) 1025, 1130
BspLI GGNNCC 3 cut(s) 127, 197, 979
BspPI GGATC 1 cut(s) 1069
BspQI GCTCTTC 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 878
BsrFI RCCGGY 1 cut(s) 1051
BsrGI TGTACA 1 cut(s) 619
BsrI ACTGG 2 cut(s) 163, 1102
BssAI RCCGGY 1 cut(s) 1051
BssECI CCNNGG 3 cut(s) 1023, 1128, 1176
BssMI GATC 6 cut(s) 3, 18, 33, 948, 1061, 1163
Bst4CI ACNGT 5 cut(s) 122, 613, 870, 1330, 1344
Bst6I CTCTTC 6 cut(s) 118, 222, 265, 514, 1154, 1275
BstAPI GCANNNNNTGC 1 cut(s) 1241
BstAUI TGTACA 1 cut(s) 619
BstC8I GCNNGC 3 cut(s) 438, 681, 976
BstDEI CTNAG 7 cut(s) 65, 308, 762, 768, 906, 996, 1014
BstDSI CCRYGG 2 cut(s) 1023, 1128
BstF5I GGATG 2 cut(s) 263, 577
BstFNI CGCG 2 cut(s) 1025, 1130
BstH2I RGCGCY 1 cut(s) 411
BstHHI GCGC 2 cut(s) 71, 410
BstKTI GATC 6 cut(s) 6, 21, 36, 951, 1064, 1166
BstMAI GTCTC 2 cut(s) 784, 999
BstMBI GATC 6 cut(s) 3, 18, 33, 948, 1061, 1163
BstMCI CGRYCG 2 cut(s) 615, 1023
BstMWI GCNNNNNNNGC 6 cut(s) 1019, 1025, 1028, 1031, 1241, 1268
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 4 cut(s) 173, 479, 695, 1175
BstSLI GKGCMC 1 cut(s) 199
BstUI CGCG 2 cut(s) 1025, 1130
BstV1I GCAGC 5 cut(s) 755, 1015, 1067, 1093, 1111
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BstZI CGGCCG 1 cut(s) 1020
BsuRI GGCC 7 cut(s) 141, 197, 440, 679, 978, 1022, 1271
BtgI CCRYGG 2 cut(s) 1023, 1128
BtsCI GGATG 2 cut(s) 263, 577
BtsIMutI CAGTG 1 cut(s) 1095
Cac8I GCNNGC 3 cut(s) 438, 681, 976
CciNI GCGGCCGC 1 cut(s) 1020
CfoI GCGC 2 cut(s) 71, 410
Cfr10I RCCGGY 1 cut(s) 1051
Cfr13I GGNCC 4 cut(s) 195, 196, 677, 977
Cfr42I CCGCGG 2 cut(s) 1026, 1131
Csp6I GTAC 3 cut(s) 620, 1147, 1326
CspCI CAANNNNNGTGG 2 cut(s) 643, 678
CviAII CATG 4 cut(s) 238, 643, 711, 1169
CviQI GTAC 3 cut(s) 620, 1147, 1326
DdeI CTNAG 7 cut(s) 65, 308, 762, 768, 906, 996, 1014
DpnI GATC 6 cut(s) 5, 20, 35, 950, 1063, 1165
DpnII GATC 6 cut(s) 3, 18, 33, 948, 1061, 1163
DriI GACNNNNNGTC 1 cut(s) 79
EaeI YGGCCR 3 cut(s) 139, 1020, 1269
EagI CGGCCG 1 cut(s) 1020
Eam1104I CTCTTC 6 cut(s) 118, 222, 265, 514, 1154, 1275
Eam1105I GACNNNNNGTC 1 cut(s) 79
EarI CTCTTC 6 cut(s) 118, 222, 265, 514, 1154, 1275
EciI GGCGGA 1 cut(s) 682
EclXI CGGCCG 1 cut(s) 1020
Eco147I AGGCCT 1 cut(s) 440
Eco24I GRGCYC 1 cut(s) 199
Eco52I CGGCCG 1 cut(s) 1020
Eco57I CTGAAG 1 cut(s) 1245
EcoO109I RGGNCCY 2 cut(s) 195, 977
EcoRI GAATTC 2 cut(s) 178, 455
EcoT38I GRGCYC 1 cut(s) 199
Esp3I CGTCTC 1 cut(s) 999
FaeI CATG 4 cut(s) 241, 646, 714, 1172
FatI CATG 4 cut(s) 237, 642, 710, 1168
FokI GGATG 2 cut(s) 250, 564
FriOI GRGCYC 1 cut(s) 199
FspBI CTAG 1 cut(s) 960
GlaI GCGC 2 cut(s) 70, 409
GsuI CTGGAG 1 cut(s) 620
HaeII RGCGCY 1 cut(s) 411
HaeIII GGCC 7 cut(s) 141, 197, 440, 679, 978, 1022, 1271
HapII CCGG 8 cut(s) 142, 174, 480, 566, 696, 706, 1052, 1176
HhaI GCGC 2 cut(s) 71, 410
Hin1II CATG 4 cut(s) 241, 646, 714, 1172
Hin6I GCGC 2 cut(s) 69, 408
HinP1I GCGC 2 cut(s) 69, 408
HincII GTYRAC 1 cut(s) 1317
HindII GTYRAC 1 cut(s) 1317
HpaII CCGG 8 cut(s) 142, 174, 480, 566, 696, 706, 1052, 1176
HphI GGTGA 5 cut(s) 247, 279, 493, 565, 869
Hpy166II GTNNAC 6 cut(s) 387, 501, 541, 832, 1147, 1317
Hpy188III TCNNGA 3 cut(s) 637, 781, 1007
Hpy8I GTNNAC 6 cut(s) 387, 501, 541, 832, 1147, 1317
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 3 cut(s) 222, 231, 336
HpyCH4III ACNGT 5 cut(s) 122, 613, 870, 1330, 1344
HpyCH4IV ACGT 2 cut(s) 298, 497
HpyCH4V TGCA 8 cut(s) 51, 245, 743, 818, 883, 920, 1255, 1295
HpyF10VI GCNNNNNNNGC 6 cut(s) 1019, 1025, 1028, 1031, 1241, 1268
HpyF3I CTNAG 7 cut(s) 65, 308, 762, 768, 906, 996, 1014
HpySE526I ACGT 2 cut(s) 298, 497
Hsp92II CATG 4 cut(s) 241, 646, 714, 1172
HspAI GCGC 2 cut(s) 69, 408
KspI CCGCGG 2 cut(s) 1026, 1131
Kzo9I GATC 6 cut(s) 3, 18, 33, 948, 1061, 1163
LguI GCTCTTC 1 cut(s) 118
Lsp1109I GCAGC 5 cut(s) 755, 1015, 1067, 1093, 1111
LweI GCATC 4 cut(s) 907, 990, 1000, 1231
MaeI CTAG 1 cut(s) 960
MaeII ACGT 2 cut(s) 298, 497
MaeIII GTNAC 4 cut(s) 370, 513, 754, 1093
MalI GATC 6 cut(s) 5, 20, 35, 950, 1063, 1165
MboI GATC 6 cut(s) 3, 18, 33, 948, 1061, 1163
MflI RGATCY 1 cut(s) 18
MhlI GDGCHC 2 cut(s) 199, 1289
MlsI TGGCCA 1 cut(s) 1271
MluCI AATT 6 cut(s) 178, 275, 400, 455, 586, 1083
MluNI TGGCCA 1 cut(s) 1271
MlyI GAGTC 8 cut(s) 68, 306, 350, 485, 625, 683, 1101, 1181
MmeI TCCRAC 3 cut(s) 33, 378, 574
Mox20I TGGCCA 1 cut(s) 1271
MscI TGGCCA 1 cut(s) 1271
MseI TTAA 3 cut(s) 702, 927, 945
MslI CAYNNNNRTG 1 cut(s) 839
Msp20I TGGCCA 1 cut(s) 1271
MspA1I CMGCKG 3 cut(s) 1025, 1130, 1198
MspI CCGG 8 cut(s) 142, 174, 480, 566, 696, 706, 1052, 1176
MspR9I CCNGG 4 cut(s) 175, 481, 697, 1177
MvnI CGCG 2 cut(s) 1025, 1130
MwoI GCNNNNNNNGC 6 cut(s) 1019, 1025, 1028, 1031, 1241, 1268
NciI CCSGG 4 cut(s) 175, 481, 697, 1177
NdeII GATC 6 cut(s) 3, 18, 33, 948, 1061, 1163
NlaIII CATG 4 cut(s) 241, 646, 714, 1172
NlaIV GGNNCC 3 cut(s) 127, 197, 979
NmuCI GTSAC 4 cut(s) 370, 513, 754, 1093
NotI GCGGCCGC 1 cut(s) 1020
NspI RCATGY 1 cut(s) 241
OliI CACNNNNGTG 1 cut(s) 839
PceI AGGCCT 1 cut(s) 440
PciI ACATGT 1 cut(s) 237
PciSI GCTCTTC 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 8 cut(s) 131, 158, 249, 484, 597, 722, 809, 1351
PfoI TCCNGGA 2 cut(s) 173, 479
PleI GAGTC 8 cut(s) 68, 306, 350, 484, 625, 683, 1100, 1180
PpsI GAGTC 8 cut(s) 68, 306, 350, 484, 625, 683, 1100, 1180
PscI ACATGT 1 cut(s) 237
PspN4I GGNNCC 3 cut(s) 127, 197, 979
PspOMI GGGCCC 1 cut(s) 195
PspPI GGNCC 4 cut(s) 195, 196, 677, 977
PsuI RGATCY 1 cut(s) 18
RsaI GTAC 3 cut(s) 621, 1148, 1327
RsaNI GTAC 3 cut(s) 620, 1147, 1326
RseI CAYNNNNRTG 1 cut(s) 839
SacII CCGCGG 2 cut(s) 1026, 1131
SapI GCTCTTC 1 cut(s) 118
SaqAI TTAA 3 cut(s) 702, 927, 945
Sau3AI GATC 6 cut(s) 3, 18, 33, 948, 1061, 1163
Sau96I GGNCC 4 cut(s) 195, 196, 677, 977
ScaI AGTACT 1 cut(s) 1327
SchI GAGTC 8 cut(s) 68, 306, 350, 485, 625, 683, 1101, 1181
ScrFI CCNGG 4 cut(s) 175, 481, 697, 1177
SduI GDGCHC 2 cut(s) 199, 1289
SfaNI GCATC 4 cut(s) 907, 990, 1000, 1231
Sfr303I CCGCGG 2 cut(s) 1026, 1131
SgrBI CCGCGG 2 cut(s) 1026, 1131
SmiMI CAYNNNNRTG 1 cut(s) 839
SpeI ACTAGT 1 cut(s) 959
Sse9I AATT 6 cut(s) 178, 275, 400, 455, 586, 1083
SseBI AGGCCT 1 cut(s) 440
SsiI CCGC 9 cut(s) 375, 693, 1019, 1023, 1025, 1031, 1128, 1130, 1196
SspMI CTAG 1 cut(s) 960
StuI AGGCCT 1 cut(s) 440
StyD4I CCNGG 4 cut(s) 173, 479, 695, 1175
TaaI ACNGT 5 cut(s) 122, 613, 870, 1330, 1344
TaiI ACGT 2 cut(s) 301, 500
TaqI TCGA 5 cut(s) 474, 600, 615, 629, 782
TasI AATT 6 cut(s) 178, 275, 400, 455, 586, 1083
TatI WGTACW 2 cut(s) 619, 1325
TauI GCSGC 6 cut(s) 1022, 1025, 1028, 1034, 1130, 1198
TfiI GAWTC 8 cut(s) 131, 158, 249, 484, 597, 722, 809, 1351
Tru1I TTAA 3 cut(s) 702, 927, 945
Tru9I TTAA 3 cut(s) 702, 927, 945
TscAI CASTG 1 cut(s) 1102
TseFI GTSAC 4 cut(s) 370, 513, 754, 1093
TseI GCWGC 5 cut(s) 743, 1028, 1055, 1106, 1124
Tsp45I GTSAC 4 cut(s) 370, 513, 754, 1093
TspDTI ATGAA 3 cut(s) 252, 618, 914
TspRI CASTG 1 cut(s) 1102
XapI RAATTY 3 cut(s) 178, 275, 455
XceI RCATGY 1 cut(s) 241
XspI CTAG 1 cut(s) 960
ZrmI AGTACT 1 cut(s) 1327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.