Rorug03G0316000

Ethylene-responsive protein kinase Le-CTR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0007173
Physical Location & Seq
Forward (+)
34096249 .. 34098768
2520 bp
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UTR
Exon/CDS
Intron
Rorug03G0316000.1

Sequence Viewer

Length: 279 bp
ATGCCACTGGGGCTAATAATGGGGCTAGGAAGGGCATTTCGTCGAAAGCGAACGGCATCCCTTGACATTCTTTCCCCCAAACGAGCCCCAAGGAACTTTTACAAGGGGAAGAACTGCAAGCCCACTGGTTTCCACACCCGAAAAGGTGGATATGTTGTGGTGCAGGACAAACTACCCAACTATGTAGTCCCTGATTTAGCTGACTTCAAGCTCAAACCATATGTATCTCAGTGCCCCAAAGAGGTCAAGACTGCAGAGACAGCCGAATCAACTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EDR1 LRR_8 Pkinase

Protein Analysis

92

Amino Acids

10.33

Weight (kDa)

10.12

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRP-L27 PF09809 24 - 84 1.5e-17 Mitochondrial ribosomal protein L27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 2 cut(s) 200, 211
AluI AGCT 2 cut(s) 200, 211
Alw26I GTCTC 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 88
BceAI ACGGC 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 252
BglI GCCNNNNNGGC 1 cut(s) 10
BmrI ACTGGG 1 cut(s) 17
BmsI GCATC 1 cut(s) 65
BmuI ACTGGG 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 2 cut(s) 12, 130
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 1 cut(s) 56
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 2 cut(s) 12, 130
BseSI GKGCMC 1 cut(s) 236
BsgI GTGCAG 1 cut(s) 182
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 173
Bsp1286I GDGCHC 2 cut(s) 88, 236
BspCNI CTCAG 1 cut(s) 241
BspMAI CTGCAG 1 cut(s) 256
BsrI ACTGG 2 cut(s) 12, 130
BssECI CCNNGG 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 56
BstMAI GTCTC 1 cut(s) 251
BstMWI GCNNNNNNNGC 2 cut(s) 10, 260
BstSFI CTRYAG 1 cut(s) 252
BstSLI GKGCMC 1 cut(s) 236
BtsCI GGATG 1 cut(s) 56
BtsIMutI CAGTG 3 cut(s) 5, 123, 236
Cac8I GCNNGC 1 cut(s) 119
CviJI RGCY 7 cut(s) 13, 25, 86, 121, 200, 211, 263
CviKI_1 RGCY 7 cut(s) 13, 25, 86, 121, 200, 211, 263
DdeI CTNAG 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 89
EcoT38I GRGCYC 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 89
FaiI YATR 4 cut(s) 153, 183, 220, 222
FaqI GGGAC 1 cut(s) 173
FauNDI CATATG 1 cut(s) 220
FokI GGATG 1 cut(s) 43
FriOI GRGCYC 1 cut(s) 88
FspBI CTAG 1 cut(s) 26
HinfI GANTC 1 cut(s) 266
Hpy188III TCNNGA 1 cut(s) 247
Hpy99I CGWCG 1 cut(s) 45
HpyAV CCTTC 1 cut(s) 24
HpyCH4V TGCA 3 cut(s) 117, 163, 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 260
HpyF3I CTNAG 1 cut(s) 228
LpnPI CCDG 3 cut(s) 111, 149, 204
LweI GCATC 1 cut(s) 65
MaeI CTAG 1 cut(s) 26
MboII GAAGA 1 cut(s) 121
MhlI GDGCHC 2 cut(s) 88, 236
MnlI CCTC 1 cut(s) 235
MwoI GCNNNNNNNGC 2 cut(s) 10, 260
NdeI CATATG 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PfeI GAWTC 1 cut(s) 266
PstI CTGCAG 1 cut(s) 256
SduI GDGCHC 2 cut(s) 88, 236
SetI ASST 4 cut(s) 148, 202, 213, 246
SfaNI GCATC 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 252
SspMI CTAG 1 cut(s) 26
StyI CCWWGG 1 cut(s) 89
TaqI TCGA 1 cut(s) 43
TfiI GAWTC 1 cut(s) 266
TscAI CASTG 3 cut(s) 12, 130, 236
TspRI CASTG 3 cut(s) 12, 130, 236
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.