Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007173

Physical Location & Seq

Genomic Coordinates Forward (+)

4035295 .. 4043992

Gene Structure 8698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG021500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2511 bp

ATGCTTCCCATCTACTGTCAAATACCTTCATGGATATGTTGCAATTTCGAAGGTAATGGAAAAGATATTTCCAACGACGATTTTAGCAGTACCTCAGTTGAAATGGATGTATATGAAACCACCATTCAGAAGAATGATGAAAATCGTTTTCACACAGGCTTTCATCATAGCTCATCGAGTATAGTTGGGCCTTCATCTAACAGTAGGTGTTTCACAACTCGGAGATCAGCTGGCCGGTGGAAGCGACAGTTCTTGCAGAGGAGAGCTCGTCAAGAACGCTTAAATAACAGCAGGAAGTCGAAAGGTCTGGATCTTCCTAAGCTGCACATGAAGGAGGATGAAGACTGCAAACCGGGCAATATAGATGCTACTTTTGAATCATATCGTGAAAGTGCACTGGACGTTATAAATTTGGATGATGATAATGATAAAAGTTTACTTTCTGGAGAAGATGAAGGTGTAAACGTCTCCCATGCTGCACATCATGACATGTGTTCGAAGGAGGAGCTTTCTGTAAGAAGTTGCTCATCTCTCAGGGTTAACTCTACTCTAGTAGATAATAGTGATAAAAAGGATTGTTACGAGAGTGATGCATCGTCAACTTGCAATCAAGAGGTTACTGGTGAGCATGATGACGTGCCATATTCAGGAAAATCCAAATGCAGTTCAAAGTCCAAGAGGCCACGAGATGGGGATCTTGATAATAGGAATCTTCAGGATCCCAAACGTTGGAAGTGTGGAGATTGTAGTTCAAGCCTATCTTGCAGAAACATGTCTTGCAAATATAGTAATATGTCACTTTGCAGTGCTGAGGACCATCTTCCAGATGGCTTTTATGATGCAGGACGTGACAGGCCCTTCATGCCACTAGAGAGTTATGAGCAAATTTTCCATCTCGACTCACGTGAAGTTATTCTTGTGGACAGGCTAAGGGATAAAGAGTTGGATGGAATTTTGTGCTCTGCCCGAGATATGGTGTCTCAATTGAAGCAGTTAAATGGTTTAAATACAGATAGAGATCGGGATGATGAGCTACAGATTGCATTATATCTTGCTCTATTTGTATCAGATCATTTTGGAGGGACTGATAGGGCGGCTCTTGTTGAAAGGAGACGAAGAGCTGGTGGTGGTTCAATATCCAGGAAGCCTTTTGTATGCACCTGCTCAATTAGGAACACTGAATCTATTAGTTTGAACCCCAAACAGTCTCCGGAGACTGTTGAAGATATTGCCTTTTCTGATATCTGTGAGAAATCTCTCCGTTCTATCAAAGCCAGACGAAAATCCGTTGTAGTACCTATAGGAACATTGCAGTTTGGTGTTTGTAGGCATAGAGCATTACTACTGAAGTACCTATGTGATCGGATGGAACCTCCAGTCCCTTGTGAGCTTGTCAGAGGATACCTGGATTTCATGCCACATGCTTGGAATATTATATCAGTCAAGAAAAATGACTCAGCCAAGAGAGGTGACTCAATTAAGGGAGGTGACTTGGTTGAGAGAGATGACTCACGGATTCGCATGGTTGTTGATGCATGTCGTCCGCATGATGTAAGAGAGGAGACAGATCCTGAATATTATTGCAGGTATATTCCTCTCAGTCGGGCCAAGGTTTCTTTCTCTGGAAGTAGCCCTGCTGATGTTTGTTTGTTTCCTTCATTGTCCTCTTCGGATGAAACTCAAACTGAATCTGGTAGTTCTCTCATTCGGTGTAAATATGGGTCGGCTGACGCAGCAGCAAAGATGCGTACTCTGGAGGTATATGGGACCTCAATGGATGATATTAGGAACTTTGAATACAGCTGCTTGGGTGAAGTTAGAATTTTAGGTGCTTTGCAACACCCCTGCATAGTAGAGATGTATGGACACAGTATATCATCCAAGTGGGCTCCTTCTATGGATGATAATTCTGGGCACCGTATATTGCAATCTGTAATTTTCATGGAGTATATAAACGGGGGTTCCTTACAGGGTTACATAGAAAAGCTATCTAAAGCAGGTGAGAAGCATGTCCCTGTGGAGTTAGCTTTAAGCATTGCTAAGAATGTTGCATGTGCACTGGTGGAGTTGCACTCAAAACACATTATTCATCGTGACATAAAAAGTGCAAACATTTTGATTGATATCGATAGGAAGACAGCTGATGGAACACCTGTTGTGAAGCTCTGTGATTTTGATAGGGCAGTGCCTCTTAGCTCGTACTTGCATACATGCTGTATTTCCCATGTTGGGATACCTCCTCCTGATGTTTGTGTTGGAACACCTCGCTGGATGGCTCCAGAGGTTCTGCGGGCAATGCATAAACAAAATATTTATGGATTGGAAGTTGATATCTGGTCGTTCGGATGCCTTCTTTTGGAGATGTTGACTTTGCAGATTCCTTACTTGGGATTATCTGAATTAGAGATTCATGACTGCCTATCGGTATTTCTCTCCCTCCCTCTCTGGCTGGCGAGTAGAATGTTTGAGGGGTCCATCTTGGACCAGTTTGACTTTATAAAGTTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EDR1 LRR_8 Pkinase

Protein Analysis

836

Amino Acids

93.98

Weight (kDa)

5.86

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EDR1_CTR1_ARMC3_pept	PF14381	414 - 481	3e-11	EDR1/CTR1/ARMC3, peptidase-like
Pkinase	PF00069	600 - 799	3.8e-33	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	601 - 805	2.4e-23	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04210
fragaria_vesca	FvH4_4g01620 FvH4_4g01620 FvH4_4g01620 FvH4_4g01620 FvH4_4g01620
malus_domestica	MD13G1201100.v1.1 MD16G1200600.v1.1
prunus_persica	Prupe.1G022600_v2.0.a1 Prupe.1G022600_v2.0.a1 Prupe.1G022600_v2.0.a1 Prupe.1G022600_v2.0.a1
pyrus_communis	pycom13g17450 pycom16g16960
rosa_chinensis	RchiOBHm_Chr4g0388191
rosa_laevigata	RLG00000010075
rosa_multiflora	Rmu_sc0001564.1_g000006
rosa_roxburghii	Rroxscaffold_5G00334700
rosa_rugosa	Rorug03G0315900 Rorug03G0316000
rosa_samantha	Rh4AG021500 Rh4BG015600 Rh4CG021700 Rh4DG016400
rosa_wichuraiana	Rw4G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	407, 2498
AarI	CACCTGC	2 cut(s)	1169, 1988
Acc36I	ACCTGC	3 cut(s)	1169, 1575, 1988
AccB1I	GGYRCC	1 cut(s)	1914
AccB7I	CCANNNNNTGG	2 cut(s)	689, 729
AccIII	TCCGGA	1 cut(s)	1210
AciI	CCGC	3 cut(s)	1094, 1544, 2290
AclI	AACGTT	1 cut(s)	727
AclWI	GGATC	5 cut(s)	318, 702, 713, 726, 1562
AcoI	YGGCCR	1 cut(s)	232
AcsI	RAATTY	4 cut(s)	409, 885, 951, 1821
AcuI	CTGAAG	2 cut(s)	698, 1367
AcvI	CACGTG	1 cut(s)	905
AfaI	GTAC	5 cut(s)	91, 1296, 1352, 1750, 2201
AfiI	CCNNNNNNNGG	7 cut(s)	647, 689, 729, 973, 2229, 2356, 2387
AflIII	ACRYGT	2 cut(s)	489, 771
AjiI	CACGTC	2 cut(s)	637, 848
AjnI	CCWGG	2 cut(s)	1139, 1404
AjuI	GAANNNNNNNTTGG	2 cut(s)	1601, 1633
AloI	GAACNNNNNNTCC	2 cut(s)	1362, 1394
Alw21I	GWGCWC	4 cut(s)	268, 397, 962, 2059
Alw26I	GTCTC	6 cut(s)	472, 984, 1105, 1208, 1212, 1556
Alw44I	GTGCAC	2 cut(s)	393, 2055
AlwI	GGATC	5 cut(s)	318, 702, 713, 726, 1562
AlwNI	CAGNNNCTG	1 cut(s)	1571
Ama87I	CYCGRG	1 cut(s)	966
Aor13HI	TCCGGA	1 cut(s)	1210
AoxI	GGCC	5 cut(s)	188, 232, 680, 854, 1605
ApaLI	GTGCAC	2 cut(s)	393, 2055
ApeKI	GCWGC	5 cut(s)	322, 476, 1733, 1736, 1803
ApoI	RAATTY	4 cut(s)	409, 885, 951, 1821
Asp700I	GAANNNNTTC	1 cut(s)	912
AspS9I	GGNCC	7 cut(s)	188, 814, 855, 1605, 1767, 2472, 2482
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	5 cut(s)	635, 1481, 1499, 1823, 2012
AsuII	TTCGAA	2 cut(s)	48, 497
AvaI	CYCGRG	1 cut(s)	966
AvaII	GGWCC	4 cut(s)	814, 1767, 2472, 2482
BaeGI	GKGCMC	3 cut(s)	397, 1917, 2059
BaeI	ACNNNNGTAYC	2 cut(s)	1334, 1367
BamHI	GGATCC	1 cut(s)	718
BanI	GGYRCC	1 cut(s)	1914
BanII	GRGCYC	2 cut(s)	268, 1891
BauI	CACGAG	1 cut(s)	684
BbrPI	CACGTG	1 cut(s)	905
BbsI	GAAGAC	2 cut(s)	348, 2141
Bbv12I	GWGCWC	4 cut(s)	268, 397, 962, 2059
BbvCI	CCTCAGC	1 cut(s)	810
BbvI	GCAGC	5 cut(s)	309, 463, 1745, 1748, 1790
BcgI	CGANNNNNNTGC	2 cut(s)	572, 606
BciT130I	CCWGG	2 cut(s)	1141, 1406
BciVI	GTATCC	2 cut(s)	1394, 2226
BcnI	CCSGG	1 cut(s)	354
BcoDI	GTCTC	6 cut(s)	472, 984, 1105, 1208, 1212, 1556
BfaI	CTAG	2 cut(s)	551, 869
BfmI	CTRYAG	2 cut(s)	1034, 1299
BfuAI	ACCTGC	3 cut(s)	1169, 1575, 1988
BfuI	GTATCC	2 cut(s)	1394, 2226
BisI	GCNGC	6 cut(s)	323, 477, 1095, 1734, 1737, 1804
BlsI	GCNGC	6 cut(s)	324, 478, 1096, 1735, 1738, 1805
Bme1390I	CCNGG	3 cut(s)	354, 1141, 1406
Bme18I	GGWCC	4 cut(s)	814, 1767, 2472, 2482
BmeT110I	CYCGRG	1 cut(s)	966
BmgBI	CACGTC	2 cut(s)	637, 848
BmgT120I	GGNCC	7 cut(s)	188, 814, 855, 1605, 1767, 2472, 2482
BmiI	GGNNCC	8 cut(s)	720, 1371, 1768, 1890, 1916, 1963, 2277, 2473
BmrFI	CCNGG	3 cut(s)	354, 1141, 1406
BmsI	GCATC	7 cut(s)	355, 580, 602, 829, 1522, 1734, 2336
BpiI	GAAGAC	2 cut(s)	348, 2141
BplI	GAGNNNNNCTC	4 cut(s)	250, 282, 2057, 2089
BpmI	CTGGAG	4 cut(s)	465, 1359, 1775, 2262
Bpu10I	CCTNAGC	3 cut(s)	318, 810, 929
Bpu14I	TTCGAA	2 cut(s)	48, 497
BpuMI	CCSGG	1 cut(s)	354
Bsa29I	ATCGAT	1 cut(s)	2127
BsaAI	YACGTR	1 cut(s)	905
BsaBI	GATNNNNATC	4 cut(s)	141, 693, 1017, 2123
BsaJI	CCNNGG	1 cut(s)	1608
BsaWI	WCCGGW	1 cut(s)	1210
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bsc4I	CCNNNNNNNGG	7 cut(s)	647, 689, 729, 973, 2229, 2356, 2387
Bse118I	RCCGGY	1 cut(s)	234
Bse1I	ACTGG	5 cut(s)	402, 625, 1376, 2064, 2485
Bse3DI	GCAATG	3 cut(s)	1307, 2034, 2301
Bse8I	GATNNNNATC	4 cut(s)	141, 693, 1017, 2123
BseAI	TCCGGA	1 cut(s)	1210
BseBI	CCWGG	2 cut(s)	1141, 1406
BseCI	ATCGAT	1 cut(s)	2127
BseDI	CCNNGG	1 cut(s)	1608
BseJI	GATNNNNATC	4 cut(s)	141, 693, 1017, 2123
BseLI	CCNNNNNNNGG	7 cut(s)	647, 689, 729, 973, 2229, 2356, 2387
BseMI	GCAATG	3 cut(s)	1307, 2034, 2301
BseMII	CTCAG	5 cut(s)	108, 547, 801, 1470, 1612
BseNI	ACTGG	5 cut(s)	402, 625, 1376, 2064, 2485
BseRI	GAGGAG	4 cut(s)	274, 518, 1574, 2229
BseSI	GKGCMC	3 cut(s)	397, 1917, 2059
BseXI	GCAGC	5 cut(s)	309, 463, 1745, 1748, 1790
BsgI	GTGCAG	2 cut(s)	308, 462
BshFI	GGCC	5 cut(s)	190, 234, 682, 856, 1607
BshNI	GGYRCC	1 cut(s)	1914
BshVI	ATCGAT	1 cut(s)	2127
BsiHKAI	GWGCWC	4 cut(s)	268, 397, 962, 2059
BsiHKCI	CYCGRG	1 cut(s)	966
BsiSI	CCGG	3 cut(s)	235, 353, 1211
BslFI	GGGAC	4 cut(s)	1096, 1364, 1780, 1997
BslI	CCNNNNNNNGG	7 cut(s)	647, 689, 729, 973, 2229, 2356, 2387
BsmAI	GTCTC	6 cut(s)	472, 984, 1105, 1208, 1212, 1556
BsmBI	CGTCTC	2 cut(s)	472, 1105
BsmFI	GGGAC	4 cut(s)	1096, 1364, 1780, 1997
BsnI	GGCC	5 cut(s)	190, 234, 682, 856, 1607
BsoBI	CYCGRG	1 cut(s)	966
Bsp119I	TTCGAA	2 cut(s)	48, 497
Bsp1286I	GDGCHC	6 cut(s)	268, 397, 962, 1891, 1917, 2059
Bsp13I	TCCGGA	1 cut(s)	1210
Bsp143I	GATC	8 cut(s)	224, 310, 694, 718, 1018, 1069, 1360, 1567
BspACI	CCGC	3 cut(s)	1094, 1544, 2290
BspANI	GGCC	5 cut(s)	190, 234, 682, 856, 1607
BspCNI	CTCAG	5 cut(s)	107, 546, 802, 1469, 1611
BspDI	ATCGAT	1 cut(s)	2127
BspEI	TCCGGA	1 cut(s)	1210
BspHI	TCATGA	2 cut(s)	484, 2410
BspLI	GGNNCC	8 cut(s)	720, 1371, 1768, 1890, 1916, 1963, 2277, 2473
BspMI	ACCTGC	3 cut(s)	1169, 1575, 1988
BspPI	GGATC	5 cut(s)	318, 702, 713, 726, 1562
BspQI	GCTCTTC	1 cut(s)	1111
BspT104I	TTCGAA	2 cut(s)	48, 497
BspT107I	GGYRCC	1 cut(s)	1914
BsrDI	GCAATG	3 cut(s)	1307, 2034, 2301
BsrFI	RCCGGY	1 cut(s)	234
BsrI	ACTGG	5 cut(s)	402, 625, 1376, 2064, 2485
BssAI	RCCGGY	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	1608
BssMI	GATC	8 cut(s)	224, 310, 694, 718, 1018, 1069, 1360, 1567
BssSI	CACGAG	1 cut(s)	684
BssT1I	CCWWGG	1 cut(s)	1608
Bst2BI	CACGAG	1 cut(s)	684
Bst2UI	CCWGG	2 cut(s)	1141, 1406
Bst4CI	ACNGT	7 cut(s)	17, 203, 249, 1206, 1219, 1871, 1919
Bst6I	CTCTTC	2 cut(s)	1111, 1672
BstBAI	YACGTR	1 cut(s)	905
BstBI	TTCGAA	2 cut(s)	48, 497
BstC8I	GCNNGC	3 cut(s)	232, 2292, 2451
BstDEI	CTNAG	9 cut(s)	94, 318, 533, 810, 929, 1456, 1598, 2040, 2192
BstKTI	GATC	8 cut(s)	227, 313, 697, 721, 1021, 1072, 1363, 1570
BstMAI	GTCTC	6 cut(s)	472, 984, 1105, 1208, 1212, 1556
BstMBI	GATC	8 cut(s)	224, 310, 694, 718, 1018, 1069, 1360, 1567
BstMWI	GCNNNNNNNGC	5 cut(s)	354, 762, 862, 1733, 2296
BstNI	CCWGG	2 cut(s)	1141, 1406
BstNSI	RCATGY	7 cut(s)	493, 775, 1424, 1539, 2012, 2055, 2214
BstSCI	CCNGG	3 cut(s)	352, 1139, 1404
BstSFI	CTRYAG	2 cut(s)	1034, 1299
BstSLI	GKGCMC	3 cut(s)	397, 1917, 2059
BstV1I	GCAGC	5 cut(s)	309, 463, 1745, 1748, 1790
BstV2I	GAAGAC	2 cut(s)	348, 2141
BstX2I	RGATCY	4 cut(s)	310, 694, 718, 1567
BstXI	CCANNNNNNTGG	1 cut(s)	1425
BstYI	RGATCY	4 cut(s)	310, 694, 718, 1567
Bsu15I	ATCGAT	1 cut(s)	2127
BsuI	GTATCC	2 cut(s)	1394, 2226
BsuRI	GGCC	5 cut(s)	190, 234, 682, 856, 1607
BsuTUI	ATCGAT	1 cut(s)	2127
BtrI	CACGTC	2 cut(s)	637, 848
BtsI	GCAGTG	2 cut(s)	811, 2190
BtsIMutI	CAGTG	5 cut(s)	395, 811, 1176, 2057, 2190
BveI	ACCTGC	3 cut(s)	1169, 1575, 1988
Cac8I	GCNNGC	3 cut(s)	232, 2292, 2451
CaiI	CAGNNNCTG	1 cut(s)	1571
CciI	TCATGA	2 cut(s)	484, 2410
Cfr10I	RCCGGY	1 cut(s)	234
Cfr13I	GGNCC	7 cut(s)	188, 814, 855, 1605, 1767, 2472, 2482
ClaI	ATCGAT	1 cut(s)	2127
CseI	GACGC	1 cut(s)	1739
Csp6I	GTAC	5 cut(s)	90, 1295, 1351, 1749, 2200
CviQI	GTAC	5 cut(s)	90, 1295, 1351, 1749, 2200
DdeI	CTNAG	9 cut(s)	94, 318, 533, 810, 929, 1456, 1598, 2040, 2192
DpnI	GATC	8 cut(s)	226, 312, 696, 720, 1020, 1071, 1362, 1569
DpnII	GATC	8 cut(s)	224, 310, 694, 718, 1018, 1069, 1360, 1567
DraI	TTTAAA	1 cut(s)	1005
EaeI	YGGCCR	1 cut(s)	232
Eam1104I	CTCTTC	2 cut(s)	1111, 1672
EarI	CTCTTC	2 cut(s)	1111, 1672
Ecl136II	GAGCTC	1 cut(s)	266
Eco130I	CCWWGG	1 cut(s)	1608
Eco24I	GRGCYC	2 cut(s)	268, 1891
Eco32I	GATATC	3 cut(s)	1243, 2125, 2332
Eco47I	GGWCC	4 cut(s)	814, 1767, 2472, 2482
Eco53kI	GAGCTC	1 cut(s)	266
Eco57I	CTGAAG	2 cut(s)	698, 1367
Eco72I	CACGTG	1 cut(s)	905
Eco88I	CYCGRG	1 cut(s)	966
EcoICRI	GAGCTC	1 cut(s)	266
EcoO109I	RGGNCCY	2 cut(s)	855, 1767
EcoRII	CCWGG	2 cut(s)	1139, 1404
EcoRV	GATATC	3 cut(s)	1243, 2125, 2332
EcoT14I	CCWWGG	1 cut(s)	1608
EcoT22I	ATGCAT	3 cut(s)	595, 1537, 2301
EcoT38I	GRGCYC	2 cut(s)	268, 1891
ErhI	CCWWGG	1 cut(s)	1608
Esp3I	CGTCTC	2 cut(s)	472, 1105
FalI	AAGNNNNNCTT	4 cut(s)	745, 777, 900, 932
FaqI	GGGAC	4 cut(s)	1096, 1364, 1780, 1997
FauI	CCCGC	1 cut(s)	2283
Fnu4HI	GCNGC	6 cut(s)	323, 477, 1095, 1734, 1737, 1804
FriOI	GRGCYC	2 cut(s)	268, 1891
Fsp4HI	GCNGC	6 cut(s)	323, 477, 1095, 1734, 1737, 1804
FspBI	CTAG	2 cut(s)	551, 869
GluI	GCNGC	6 cut(s)	323, 477, 1095, 1734, 1737, 1804
GsuI	CTGGAG	4 cut(s)	465, 1359, 1775, 2262
HaeIII	GGCC	5 cut(s)	190, 234, 682, 856, 1607
HapII	CCGG	3 cut(s)	235, 353, 1211
HgaI	GACGC	1 cut(s)	1739
HincII	GTYRAC	3 cut(s)	541, 600, 2367
HindII	GTYRAC	3 cut(s)	541, 600, 2367
HpaI	GTTAAC	1 cut(s)	541
HpaII	CCGG	3 cut(s)	235, 353, 1211
HphI	GGTGA	5 cut(s)	635, 1481, 1499, 1823, 2012
Hpy166II	GTNNAC	8 cut(s)	395, 437, 463, 541, 600, 922, 2057, 2367
Hpy188I	TCNGA	9 cut(s)	129, 222, 1069, 1240, 1365, 1397, 1672, 2345, 2398
Hpy8I	GTNNAC	8 cut(s)	395, 437, 463, 541, 600, 922, 2057, 2367
Hpy99I	CGWCG	1 cut(s)	80
HpyCH4III	ACNGT	7 cut(s)	17, 203, 249, 1206, 1219, 1871, 1919
HpyCH4IV	ACGT	6 cut(s)	402, 465, 636, 727, 847, 904
HpyF10VI	GCNNNNNNNGC	5 cut(s)	354, 762, 862, 1733, 2296
HpyF3I	CTNAG	9 cut(s)	94, 318, 533, 810, 929, 1456, 1598, 2040, 2192
HpySE526I	ACGT	6 cut(s)	402, 465, 636, 727, 847, 904
Kpn2I	TCCGGA	1 cut(s)	1210
KspAI	GTTAAC	1 cut(s)	541
Kzo9I	GATC	8 cut(s)	224, 310, 694, 718, 1018, 1069, 1360, 1567
LguI	GCTCTTC	1 cut(s)	1111
LmnI	GCTCC	3 cut(s)	505, 1894, 2281
Lsp1109I	GCAGC	5 cut(s)	309, 463, 1745, 1748, 1790
LweI	GCATC	7 cut(s)	355, 580, 602, 829, 1522, 1734, 2336
MaeI	CTAG	2 cut(s)	551, 869
MaeII	ACGT	6 cut(s)	402, 465, 636, 727, 847, 904
MaeIII	GTNAC	8 cut(s)	578, 616, 795, 848, 1469, 1487, 1973, 2093
MalI	GATC	8 cut(s)	226, 312, 696, 720, 1020, 1071, 1362, 1569
MboI	GATC	8 cut(s)	224, 310, 694, 718, 1018, 1069, 1360, 1567
MfeI	CAATTG	1 cut(s)	983
MflI	RGATCY	4 cut(s)	310, 694, 718, 1567
MhlI	GDGCHC	6 cut(s)	268, 397, 962, 1891, 1917, 2059
MlyI	GAGTC	4 cut(s)	893, 1448, 1466, 1502
MmeI	TCCRAC	4 cut(s)	96, 710, 924, 2236
Mph1103I	ATGCAT	3 cut(s)	595, 1537, 2301
MroI	TCCGGA	1 cut(s)	1210
MroXI	GAANNNNTTC	1 cut(s)	912
MseI	TTAA	6 cut(s)	281, 540, 995, 1004, 1479, 2030
MslI	CAYNNNNRTG	2 cut(s)	34, 1882
MspA1I	CMGCKG	3 cut(s)	230, 1803, 2141
MspI	CCGG	3 cut(s)	235, 353, 1211
MspR9I	CCNGG	3 cut(s)	354, 1141, 1406
MunI	CAATTG	1 cut(s)	983
MvaI	CCWGG	2 cut(s)	1141, 1406
MwoI	GCNNNNNNNGC	5 cut(s)	354, 762, 862, 1733, 2296
NciI	CCSGG	1 cut(s)	354
NdeII	GATC	8 cut(s)	224, 310, 694, 718, 1018, 1069, 1360, 1567
NlaIV	GGNNCC	8 cut(s)	720, 1371, 1768, 1890, 1916, 1963, 2277, 2473
NmuCI	GTSAC	5 cut(s)	795, 848, 1469, 1487, 2093
NsiI	ATGCAT	3 cut(s)	595, 1537, 2301
NspI	RCATGY	7 cut(s)	493, 775, 1424, 1539, 2012, 2055, 2214
NspV	TTCGAA	2 cut(s)	48, 497
PagI	TCATGA	2 cut(s)	484, 2410
PaqCI	CACCTGC	2 cut(s)	1169, 1988
PciI	ACATGT	2 cut(s)	489, 771
PciSI	GCTCTTC	1 cut(s)	1111
PdmI	GAANNNNTTC	1 cut(s)	912
PfeI	GAWTC	7 cut(s)	377, 709, 1181, 1516, 1688, 2377, 2407
PflMI	CCANNNNNTGG	2 cut(s)	689, 729
PfoI	TCCNGGA	1 cut(s)	1139
PkrI	GCNGC	6 cut(s)	324, 478, 1096, 1735, 1738, 1805
PleI	GAGTC	4 cut(s)	893, 1448, 1466, 1502
PmaCI	CACGTG	1 cut(s)	905
PmlI	CACGTG	1 cut(s)	905
PpsI	GAGTC	4 cut(s)	893, 1448, 1466, 1502
Ppu21I	YACGTR	1 cut(s)	905
PpuMI	RGGWCCY	1 cut(s)	1767
PscI	ACATGT	2 cut(s)	489, 771
PsiI	TTATAA	2 cut(s)	407, 2498
Psp124BI	GAGCTC	1 cut(s)	268
Psp1406I	AACGTT	1 cut(s)	727
Psp5II	RGGWCCY	1 cut(s)	1767
Psp6I	CCWGG	2 cut(s)	1139, 1404
PspCI	CACGTG	1 cut(s)	905
PspGI	CCWGG	2 cut(s)	1139, 1404
PspN4I	GGNNCC	8 cut(s)	720, 1371, 1768, 1890, 1916, 1963, 2277, 2473
PspPI	GGNCC	7 cut(s)	188, 814, 855, 1605, 1767, 2472, 2482
PspPPI	RGGWCCY	1 cut(s)	1767
PsrI	GAACNNNNNNTAC	2 cut(s)	1781, 1813
PstNI	CAGNNNCTG	1 cut(s)	1571
PsuI	RGATCY	4 cut(s)	310, 694, 718, 1567
PvuII	CAGCTG	3 cut(s)	230, 1803, 2141
RsaI	GTAC	5 cut(s)	91, 1296, 1352, 1750, 2201
RsaNI	GTAC	5 cut(s)	90, 1295, 1351, 1749, 2200
RseI	CAYNNNNRTG	2 cut(s)	34, 1882
SacI	GAGCTC	1 cut(s)	268
SapI	GCTCTTC	1 cut(s)	1111
SaqAI	TTAA	6 cut(s)	281, 540, 995, 1004, 1479, 2030
SatI	GCNGC	6 cut(s)	323, 477, 1095, 1734, 1737, 1804
Sau3AI	GATC	8 cut(s)	224, 310, 694, 718, 1018, 1069, 1360, 1567
Sau96I	GGNCC	7 cut(s)	188, 814, 855, 1605, 1767, 2472, 2482
SchI	GAGTC	4 cut(s)	893, 1448, 1466, 1502
ScrFI	CCNGG	3 cut(s)	354, 1141, 1406
SduI	GDGCHC	6 cut(s)	268, 397, 962, 1891, 1917, 2059
SfaNI	GCATC	7 cut(s)	355, 580, 602, 829, 1522, 1734, 2336
SfcI	CTRYAG	2 cut(s)	1034, 1299
SfuI	TTCGAA	2 cut(s)	48, 497
SinI	GGWCC	4 cut(s)	814, 1767, 2472, 2482
SmiMI	CAYNNNNRTG	2 cut(s)	34, 1882
SsiI	CCGC	3 cut(s)	1094, 1544, 2290
SspI	AATATT	3 cut(s)	1432, 1577, 2311
SspMI	CTAG	2 cut(s)	551, 869
SstI	GAGCTC	1 cut(s)	268
StyD4I	CCNGG	3 cut(s)	352, 1139, 1404
StyI	CCWWGG	1 cut(s)	1608
TaaI	ACNGT	7 cut(s)	17, 203, 249, 1206, 1219, 1871, 1919
TaiI	ACGT	6 cut(s)	405, 468, 639, 730, 850, 907
TaqI	TCGA	6 cut(s)	48, 176, 299, 497, 897, 2127
TauI	GCSGC	1 cut(s)	1097
TfiI	GAWTC	7 cut(s)	377, 709, 1181, 1516, 1688, 2377, 2407
Tru1I	TTAA	6 cut(s)	281, 540, 995, 1004, 1479, 2030
Tru9I	TTAA	6 cut(s)	281, 540, 995, 1004, 1479, 2030
TscAI	CASTG	5 cut(s)	402, 811, 1183, 2064, 2190
TseFI	GTSAC	5 cut(s)	795, 848, 1469, 1487, 2093
TseI	GCWGC	5 cut(s)	322, 476, 1733, 1736, 1803
Tsp45I	GTSAC	5 cut(s)	795, 848, 1469, 1487, 2093
TspGWI	ACGGA	3 cut(s)	1250, 1276, 1528
TspRI	CASTG	5 cut(s)	402, 811, 1183, 2064, 2190
Van91I	CCANNNNNTGG	2 cut(s)	689, 729
VneI	GTGCAC	2 cut(s)	393, 2055
VpaK11BI	GGWCC	4 cut(s)	814, 1767, 2472, 2482
XapI	RAATTY	4 cut(s)	409, 885, 951, 1821
XceI	RCATGY	7 cut(s)	493, 775, 1424, 1539, 2012, 2055, 2214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	824
XmnI	GAANNNNTTC	1 cut(s)	912
XspI	CTAG	2 cut(s)	551, 869
Zsp2I	ATGCAT	3 cut(s)	595, 1537, 2301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.