Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007173

Physical Location & Seq

Genomic Coordinates Forward (+)

2469158 .. 2477667

Gene Structure 8510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG016400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2667 bp

ATGCTTCCCATCTACTGTCAAATACCTTCATGGATATGTTGCAATTTGGAAGGTAATGGAAAAGACATGTCCAACGACGATTTTAGCAGTACCTCAGTTGAAATGGATGTATATGAAACCACCATTCAGAAGAATGATGAAAATCGTTTTCACACAGGCTTTCATCATAGCTCATCGAGTATAGTTGGGCCTTCATCTAACAGTAGGTGTTTCACAACTCGGAGATCAGCTGGCCGGTGGAAGCGACAGTTCTTGCAGAGGAGAGCTCGTCAAGAACGCTTAAATAACAGCAGGAAGTCGAAAGGTCTGGATCTTCCTAAGCTGCACATGAAGGAGGATGAAGACTGCAAACCAGGCAATATAGATGCTACTTTTGAATCATATCGTGAAAGTGCACTGGACATTATAAATTTGGATGATGATAATGATAAAAGTTTACTTTCTGGAGAAGATGAAGGTGTAAACGTCTCCCATGCTGCACATCATGACATGTGTTCGAAGAAGGAGGAGCTTTCTGTAAGAAGTTGCTCATCTCTTAGGGTTAACTCTACTCTAGTAGATAATGGTGATAAAAAGGATTGTTACGAGAGTGATGCATCGTCAACTTGCAATCAAGAGGTTACTGGTGAGCACGATGACGTGCCATATTCAGGAAAATCCAAATGCAGTTCAAAGTCCAAGAGGCCACGAGATGGGGATCTTGATAATAGGAATCTTCAGGATCCCAAACGTTGGAAGTGTGGAGATTGTAGTTCAAGCCTATCTTGCAGAAACATGTCTTGCAAATATAGTAATATGTCATTTTGCAGTGCTGAGGACCATCTTCCAGATGGCTTTTATGATGCAGGACGTGACAGGCCCTTCATGCCACTAGAGAGTTATGAGCAAATTTTCCATCTCGACTCACGTGAAGTTATTCTTGTGGACAGGCTAAGGGATAAAGAGTTGGATGGAATTTTGTGCTCTGCCCGAGATATGGTGTCTCAATTGAAGCAGTTAAATGGTCTAAATACAGATAGAGATCGGGATGATGAGCTACAGATTGCATTATATCTTGCTCTATTTGTATCAGATCATTTTGGAGGGACTGATAGGGCGGCTCTTGTTGAAAGGAGACGAAGAGCTGGTGGTGGTTCAATATCCAGGAAGCCTTTTGTATGCACCTGCTCAATTAGGAACTCTGAATCTATTAGTTTGAACCCCAAACAGTCTCCGGAGACTGTTGAAGATATTGCCTTTTCTGATATCTGTGAGAAATCTCTCCGTTCTATCAAGGCCAGACAAAAATCCGTTGTAGTACCTATAGGAACATTGCAGTTTGGTGTTTGTAGGCATAGAGCATTGCTACTGAAGTACCTATGTGATCGGATGGAACCTCCAATCCCTTGTGAGCTTGTCAGAGGATACCTGGATTTCATGCCACATGCTTGGAATATTATATCAGTCAAGAAAAATGACTCAACCAAGAGAGGTGACTCGATTAAGGGAGGTGACTTGGTTGAGAGAGATGACTCACGGATTCGCATGGTTGTTGATGCATGTCGTCCACATGATGTAAGAGAGGAGACAGATCCTGAATATTATTGCAGGTATATTCCTCTCAGTCGGGCCAGGGTTTCTTTCTCTGGAAGCAGCCCTGCTGATGTTTGTTTGTTTCCTTCATTGTCCTCTTCGGATGAAACTCAAACTGAATCCGGTAGTTCTCTCATTCGGTGTAAATATGGGTCGGCTGACGCAGCAGCAAAGATGCGTACTCTGGAGGTATATGGGACCTCAGTGGATGATATTAGGAACTTTGAATACAGCTGCTTGGGTGAAGTTAGAATTTTAGGTGCTTTGCAACACCCCTGCATAGTAGAGATGTATGGACACAGTATATCATCCAAGTGGGCTCCTTCTATGGATGATAATTCTGGGCACCGTATATTGCAATCTGTAATTTTCATGGAGTATATAAACGGGGGTTCCTTACAGGGTTACATAGAAAAGCTATCTAAAGCAGGTGAGAAGCATGTCCCTGTGGAGTTAGCTTTAAGCATCGCTAAGAATGTTGCATGTGCACTGGTGGAGTTGCACTCAAAACACATTATTCATCGTGACATAAAAAGTGCAAACATTTTGATTGATATCGATAGGAAGACAGCTGATGGAACACCTGTTGTGAAGCTCTGTGATTTTGATAGGGCAGTGCCTCTTAGCTCGTACTTGCATACATGCTGTATTGCCCATGTTGGGATACCTCCTCCTGATGTTTGTGTTGGAACACCTCGCTGGATGGCTCCAGAGGTTCTGCGGGCAATGCATAAACAAAATATTTATGGATTGGAAGTTGATATCTGGTCGTTTGGATGCCTTCTTTTGGAGATGTTGACTTTGCAGATTCCTTACTTGGGATTATCTGAATTAGAGATTCATGACTGTCTATCGATGGGAAAACGACCCAAGTTAACAGATAACTTGGAGGCGCTTCGGCCATTGGAGAAACCTGCAATGGCTCAATCTGCTGAAGAGCTTGAGCAAACAGAAGCTGACTTAGATGTACTAAGATTTCTGGTTGACTTGTTCTGCCAATGTACTGAGGAGAATCCGCAAAGTCGTCCAACGGCTGACAGCCTCTACAAATTGTTGCTCGAACACAGCACCCAGTTTACAAGTTCAAAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EDR1 LRR_8 Pkinase

Protein Analysis

888

Amino Acids

99.72

Weight (kDa)

5.73

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EDR1_CTR1_ARMC3_pept	PF14381	415 - 482	1.3e-11	EDR1/CTR1/ARMC3, peptidase-like
Pkinase	PF00069	601 - 873	6.9e-36	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	602 - 873	2.8e-25	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04210
fragaria_vesca	FvH4_4g01620 FvH4_4g01620 FvH4_4g01620 FvH4_4g01620 FvH4_4g01620
malus_domestica	MD13G1201100.v1.1 MD16G1200600.v1.1
prunus_persica	Prupe.1G022600_v2.0.a1 Prupe.1G022600_v2.0.a1 Prupe.1G022600_v2.0.a1 Prupe.1G022600_v2.0.a1
pyrus_communis	pycom13g17450 pycom16g16960
rosa_chinensis	RchiOBHm_Chr4g0388191
rosa_laevigata	RLG00000010075
rosa_multiflora	Rmu_sc0001564.1_g000006
rosa_roxburghii	Rroxscaffold_5G00334700
rosa_rugosa	Rorug03G0315900 Rorug03G0316000
rosa_samantha	Rh4AG021500 Rh4BG015600 Rh4CG021700 Rh4DG016400
rosa_wichuraiana	Rw4G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	407
AarI	CACCTGC	2 cut(s)	1172, 1991
Acc36I	ACCTGC	4 cut(s)	1172, 1578, 1991, 2494
AccB1I	GGYRCC	1 cut(s)	1917
AccB7I	CCANNNNNTGG	2 cut(s)	692, 732
AccIII	TCCGGA	1 cut(s)	1213
AciI	CCGC	3 cut(s)	1097, 2293, 2588
AclI	AACGTT	1 cut(s)	730
AclWI	GGATC	5 cut(s)	318, 705, 716, 729, 1565
AcoI	YGGCCR	2 cut(s)	232, 2471
AcsI	RAATTY	4 cut(s)	409, 888, 954, 1824
AcuI	CTGAAG	3 cut(s)	701, 1370, 2526
AcvI	CACGTG	1 cut(s)	908
AfaI	GTAC	7 cut(s)	91, 1299, 1355, 1753, 2204, 2541, 2575
AfiI	CCNNNNNNNGG	7 cut(s)	650, 692, 732, 976, 2232, 2359, 2390
AflIII	ACRYGT	3 cut(s)	66, 489, 774
AjiI	CACGTC	2 cut(s)	640, 851
AjnI	CCWGG	4 cut(s)	352, 1142, 1407, 1610
AloI	GAACNNNNNNTCC	2 cut(s)	1365, 1397
Alw21I	GWGCWC	5 cut(s)	268, 397, 633, 965, 2062
Alw26I	GTCTC	6 cut(s)	472, 987, 1108, 1211, 1215, 1559
Alw44I	GTGCAC	2 cut(s)	393, 2058
AlwI	GGATC	5 cut(s)	318, 705, 716, 729, 1565
AlwNI	CAGNNNCTG	2 cut(s)	1574, 2528
Ama87I	CYCGRG	1 cut(s)	969
Aor13HI	TCCGGA	1 cut(s)	1213
AoxI	GGCC	7 cut(s)	188, 232, 683, 857, 1275, 1608, 2471
ApaLI	GTGCAC	2 cut(s)	393, 2058
ApeKI	GCWGC	6 cut(s)	322, 476, 1632, 1736, 1739, 1806
ApoI	RAATTY	4 cut(s)	409, 888, 954, 1824
Asp700I	GAANNNNTTC	1 cut(s)	915
AspLEI	GCGC	1 cut(s)	2467
AspS9I	GGNCC	5 cut(s)	188, 817, 858, 1608, 1770
AsuHPI	GGTGA	6 cut(s)	578, 638, 1484, 1502, 1826, 2015
AsuII	TTCGAA	1 cut(s)	497
AvaI	CYCGRG	1 cut(s)	969
AvaII	GGWCC	2 cut(s)	817, 1770
BaeGI	GKGCMC	3 cut(s)	397, 1920, 2062
BaeI	ACNNNNGTAYC	2 cut(s)	1337, 1370
BamHI	GGATCC	1 cut(s)	721
BanI	GGYRCC	1 cut(s)	1917
BanII	GRGCYC	2 cut(s)	268, 1894
BauI	CACGAG	1 cut(s)	687
BbrPI	CACGTG	1 cut(s)	908
BbsI	GAAGAC	2 cut(s)	348, 2144
Bbv12I	GWGCWC	5 cut(s)	268, 397, 633, 965, 2062
BbvCI	CCTCAGC	1 cut(s)	813
BbvI	GCAGC	6 cut(s)	309, 463, 1644, 1748, 1751, 1793
BceAI	ACGGC	1 cut(s)	2619
BcgI	CGANNNNNNTGC	2 cut(s)	575, 609
BciT130I	CCWGG	4 cut(s)	354, 1144, 1409, 1612
BciVI	GTATCC	2 cut(s)	1397, 2229
BcoDI	GTCTC	6 cut(s)	472, 987, 1108, 1211, 1215, 1559
BfaI	CTAG	2 cut(s)	554, 872
BfmI	CTRYAG	2 cut(s)	1037, 1302
BfoI	RGCGCY	1 cut(s)	2468
BfuAI	ACCTGC	4 cut(s)	1172, 1578, 1991, 2494
BfuI	GTATCC	2 cut(s)	1397, 2229
BisI	GCNGC	7 cut(s)	323, 477, 1098, 1633, 1737, 1740, 1807
BlsI	GCNGC	7 cut(s)	324, 478, 1099, 1634, 1738, 1741, 1808
Bme1390I	CCNGG	4 cut(s)	354, 1144, 1409, 1612
Bme18I	GGWCC	2 cut(s)	817, 1770
BmeT110I	CYCGRG	1 cut(s)	969
BmgBI	CACGTC	2 cut(s)	640, 851
BmgT120I	GGNCC	5 cut(s)	188, 817, 858, 1608, 1770
BmiI	GGNNCC	7 cut(s)	723, 1374, 1771, 1893, 1919, 1966, 2280
BmrFI	CCNGG	4 cut(s)	354, 1144, 1409, 1612
BmrI	ACTGGG	1 cut(s)	2638
BmsI	GCATC	8 cut(s)	355, 583, 605, 832, 1525, 1737, 2046, 2339
BmuI	ACTGGG	1 cut(s)	2638
BpiI	GAAGAC	2 cut(s)	348, 2144
BplI	GAGNNNNNCTC	4 cut(s)	250, 282, 2060, 2092
BpmI	CTGGAG	3 cut(s)	465, 1778, 2265
Bpu10I	CCTNAGC	3 cut(s)	318, 813, 932
Bpu14I	TTCGAA	1 cut(s)	497
BpuEI	CTTGAG	1 cut(s)	2534
Bsa29I	ATCGAT	2 cut(s)	2130, 2426
BsaAI	YACGTR	1 cut(s)	908
BsaBI	GATNNNNATC	4 cut(s)	141, 696, 1020, 2126
BsaJI	CCNNGG	1 cut(s)	1611
BsaWI	WCCGGW	2 cut(s)	1213, 1694
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bsc4I	CCNNNNNNNGG	7 cut(s)	650, 692, 732, 976, 2232, 2359, 2390
Bse118I	RCCGGY	1 cut(s)	234
Bse1I	ACTGG	4 cut(s)	402, 628, 2067, 2644
Bse3DI	GCAATG	4 cut(s)	1310, 1340, 2304, 2496
Bse8I	GATNNNNATC	4 cut(s)	141, 696, 1020, 2126
BseAI	TCCGGA	1 cut(s)	1213
BseBI	CCWGG	4 cut(s)	354, 1144, 1409, 1612
BseCI	ATCGAT	2 cut(s)	2130, 2426
BseDI	CCNNGG	1 cut(s)	1611
BseJI	GATNNNNATC	4 cut(s)	141, 696, 1020, 2126
BseLI	CCNNNNNNNGG	7 cut(s)	650, 692, 732, 976, 2232, 2359, 2390
BseMI	GCAATG	4 cut(s)	1310, 1340, 2304, 2496
BseMII	CTCAG	5 cut(s)	108, 804, 1615, 1788, 2568
BseNI	ACTGG	4 cut(s)	402, 628, 2067, 2644
BseRI	GAGGAG	5 cut(s)	274, 521, 1577, 2232, 2594
BseSI	GKGCMC	3 cut(s)	397, 1920, 2062
BseXI	GCAGC	6 cut(s)	309, 463, 1644, 1748, 1751, 1793
BsgI	GTGCAG	2 cut(s)	308, 462
BshFI	GGCC	7 cut(s)	190, 234, 685, 859, 1277, 1610, 2473
BshNI	GGYRCC	1 cut(s)	1917
BshVI	ATCGAT	2 cut(s)	2130, 2426
BsiHKAI	GWGCWC	5 cut(s)	268, 397, 633, 965, 2062
BsiHKCI	CYCGRG	1 cut(s)	969
BsiSI	CCGG	3 cut(s)	235, 1214, 1695
BslFI	GGGAC	3 cut(s)	1099, 1783, 2000
BslI	CCNNNNNNNGG	7 cut(s)	650, 692, 732, 976, 2232, 2359, 2390
BsmAI	GTCTC	6 cut(s)	472, 987, 1108, 1211, 1215, 1559
BsmBI	CGTCTC	2 cut(s)	472, 1108
BsmFI	GGGAC	3 cut(s)	1099, 1783, 2000
BsnI	GGCC	7 cut(s)	190, 234, 685, 859, 1277, 1610, 2473
BsoBI	CYCGRG	1 cut(s)	969
Bsp119I	TTCGAA	1 cut(s)	497
Bsp1286I	GDGCHC	7 cut(s)	268, 397, 633, 965, 1894, 1920, 2062
Bsp13I	TCCGGA	1 cut(s)	1213
Bsp143I	GATC	8 cut(s)	224, 310, 697, 721, 1021, 1072, 1363, 1570
BspACI	CCGC	3 cut(s)	1097, 2293, 2588
BspANI	GGCC	7 cut(s)	190, 234, 685, 859, 1277, 1610, 2473
BspCNI	CTCAG	5 cut(s)	107, 805, 1614, 1787, 2569
BspDI	ATCGAT	2 cut(s)	2130, 2426
BspEI	TCCGGA	1 cut(s)	1213
BspHI	TCATGA	2 cut(s)	484, 2413
BspLI	GGNNCC	7 cut(s)	723, 1374, 1771, 1893, 1919, 1966, 2280
BspMI	ACCTGC	4 cut(s)	1172, 1578, 1991, 2494
BspPI	GGATC	5 cut(s)	318, 705, 716, 729, 1565
BspQI	GCTCTTC	2 cut(s)	1114, 2502
BspT104I	TTCGAA	1 cut(s)	497
BspT107I	GGYRCC	1 cut(s)	1917
BsrDI	GCAATG	4 cut(s)	1310, 1340, 2304, 2496
BsrFI	RCCGGY	1 cut(s)	234
BsrI	ACTGG	4 cut(s)	402, 628, 2067, 2644
BssAI	RCCGGY	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	1611
BssMI	GATC	8 cut(s)	224, 310, 697, 721, 1021, 1072, 1363, 1570
BssSI	CACGAG	1 cut(s)	687
Bst2BI	CACGAG	1 cut(s)	687
Bst2UI	CCWGG	4 cut(s)	354, 1144, 1409, 1612
Bst4CI	ACNGT	8 cut(s)	17, 203, 249, 1209, 1222, 1874, 1922, 2420
Bst6I	CTCTTC	3 cut(s)	1114, 1675, 2502
BstBAI	YACGTR	1 cut(s)	908
BstBI	TTCGAA	1 cut(s)	497
BstC8I	GCNNGC	2 cut(s)	232, 2295
BstH2I	RGCGCY	1 cut(s)	2468
BstHHI	GCGC	1 cut(s)	2467
BstKTI	GATC	8 cut(s)	227, 313, 700, 724, 1024, 1075, 1366, 1573
BstMAI	GTCTC	6 cut(s)	472, 987, 1108, 1211, 1215, 1559
BstMBI	GATC	8 cut(s)	224, 310, 697, 721, 1021, 1072, 1363, 1570
BstMWI	GCNNNNNNNGC	6 cut(s)	354, 765, 865, 1736, 2299, 2501
BstNI	CCWGG	4 cut(s)	354, 1144, 1409, 1612
BstNSI	RCATGY	8 cut(s)	70, 493, 778, 1427, 1542, 2015, 2058, 2217
BstSCI	CCNGG	4 cut(s)	352, 1142, 1407, 1610
BstSFI	CTRYAG	2 cut(s)	1037, 1302
BstSLI	GKGCMC	3 cut(s)	397, 1920, 2062
BstV1I	GCAGC	6 cut(s)	309, 463, 1644, 1748, 1751, 1793
BstV2I	GAAGAC	2 cut(s)	348, 2144
BstX2I	RGATCY	4 cut(s)	310, 697, 721, 1570
BstXI	CCANNNNNNTGG	1 cut(s)	1428
BstYI	RGATCY	4 cut(s)	310, 697, 721, 1570
Bsu15I	ATCGAT	2 cut(s)	2130, 2426
BsuI	GTATCC	2 cut(s)	1397, 2229
BsuRI	GGCC	7 cut(s)	190, 234, 685, 859, 1277, 1610, 2473
BsuTUI	ATCGAT	2 cut(s)	2130, 2426
BtgZI	GCGATG	1 cut(s)	2023
BtrI	CACGTC	2 cut(s)	640, 851
BtsI	GCAGTG	2 cut(s)	814, 2193
BtsIMutI	CAGTG	5 cut(s)	395, 814, 1782, 2060, 2193
BveI	ACCTGC	4 cut(s)	1172, 1578, 1991, 2494
Cac8I	GCNNGC	2 cut(s)	232, 2295
CaiI	CAGNNNCTG	2 cut(s)	1574, 2528
CciI	TCATGA	2 cut(s)	484, 2413
CfoI	GCGC	1 cut(s)	2467
Cfr10I	RCCGGY	1 cut(s)	234
Cfr13I	GGNCC	5 cut(s)	188, 817, 858, 1608, 1770
ClaI	ATCGAT	2 cut(s)	2130, 2426
CseI	GACGC	1 cut(s)	1742
Csp6I	GTAC	7 cut(s)	90, 1298, 1354, 1752, 2203, 2540, 2574
CviQI	GTAC	7 cut(s)	90, 1298, 1354, 1752, 2203, 2540, 2574
DpnI	GATC	8 cut(s)	226, 312, 699, 723, 1023, 1074, 1365, 1572
DpnII	GATC	8 cut(s)	224, 310, 697, 721, 1021, 1072, 1363, 1570
EaeI	YGGCCR	2 cut(s)	232, 2471
Eam1104I	CTCTTC	3 cut(s)	1114, 1675, 2502
EarI	CTCTTC	3 cut(s)	1114, 1675, 2502
Ecl136II	GAGCTC	1 cut(s)	266
Eco24I	GRGCYC	2 cut(s)	268, 1894
Eco32I	GATATC	3 cut(s)	1246, 2128, 2335
Eco47I	GGWCC	2 cut(s)	817, 1770
Eco53kI	GAGCTC	1 cut(s)	266
Eco57I	CTGAAG	3 cut(s)	701, 1370, 2526
Eco72I	CACGTG	1 cut(s)	908
Eco88I	CYCGRG	1 cut(s)	969
EcoICRI	GAGCTC	1 cut(s)	266
EcoO109I	RGGNCCY	2 cut(s)	858, 1770
EcoRII	CCWGG	4 cut(s)	352, 1142, 1407, 1610
EcoRV	GATATC	3 cut(s)	1246, 2128, 2335
EcoT22I	ATGCAT	3 cut(s)	598, 1540, 2304
EcoT38I	GRGCYC	2 cut(s)	268, 1894
Esp3I	CGTCTC	2 cut(s)	472, 1108
FalI	AAGNNNNNCTT	4 cut(s)	748, 780, 903, 935
FaqI	GGGAC	3 cut(s)	1099, 1783, 2000
FauI	CCCGC	1 cut(s)	2286
Fnu4HI	GCNGC	7 cut(s)	323, 477, 1098, 1633, 1737, 1740, 1807
FriOI	GRGCYC	2 cut(s)	268, 1894
Fsp4HI	GCNGC	7 cut(s)	323, 477, 1098, 1633, 1737, 1740, 1807
FspBI	CTAG	2 cut(s)	554, 872
GlaI	GCGC	1 cut(s)	2466
GluI	GCNGC	7 cut(s)	323, 477, 1098, 1633, 1737, 1740, 1807
GsuI	CTGGAG	3 cut(s)	465, 1778, 2265
HaeII	RGCGCY	1 cut(s)	2468
HaeIII	GGCC	7 cut(s)	190, 234, 685, 859, 1277, 1610, 2473
HapII	CCGG	3 cut(s)	235, 1214, 1695
HgaI	GACGC	1 cut(s)	1742
HhaI	GCGC	1 cut(s)	2467
Hin6I	GCGC	1 cut(s)	2465
HinP1I	GCGC	1 cut(s)	2465
HincII	GTYRAC	5 cut(s)	544, 603, 2370, 2448, 2557
HindII	GTYRAC	5 cut(s)	544, 603, 2370, 2448, 2557
HpaI	GTTAAC	2 cut(s)	544, 2448
HpaII	CCGG	3 cut(s)	235, 1214, 1695
HphI	GGTGA	6 cut(s)	578, 638, 1484, 1502, 1826, 2015
Hpy188I	TCNGA	9 cut(s)	129, 222, 1072, 1183, 1243, 1368, 1400, 1675, 2401
Hpy99I	CGWCG	1 cut(s)	80
HpyCH4III	ACNGT	8 cut(s)	17, 203, 249, 1209, 1222, 1874, 1922, 2420
HpyCH4IV	ACGT	5 cut(s)	465, 639, 730, 850, 907
HpyF10VI	GCNNNNNNNGC	6 cut(s)	354, 765, 865, 1736, 2299, 2501
HpySE526I	ACGT	5 cut(s)	465, 639, 730, 850, 907
HspAI	GCGC	1 cut(s)	2465
Kpn2I	TCCGGA	1 cut(s)	1213
KspAI	GTTAAC	2 cut(s)	544, 2448
Kzo9I	GATC	8 cut(s)	224, 310, 697, 721, 1021, 1072, 1363, 1570
LguI	GCTCTTC	2 cut(s)	1114, 2502
LmnI	GCTCC	3 cut(s)	508, 1897, 2284
Lsp1109I	GCAGC	6 cut(s)	309, 463, 1644, 1748, 1751, 1793
LweI	GCATC	8 cut(s)	355, 583, 605, 832, 1525, 1737, 2046, 2339
MaeI	CTAG	2 cut(s)	554, 872
MaeII	ACGT	5 cut(s)	465, 639, 730, 850, 907
MaeIII	GTNAC	7 cut(s)	581, 619, 851, 1472, 1490, 1976, 2096
MalI	GATC	8 cut(s)	226, 312, 699, 723, 1023, 1074, 1365, 1572
MboI	GATC	8 cut(s)	224, 310, 697, 721, 1021, 1072, 1363, 1570
MfeI	CAATTG	1 cut(s)	986
MflI	RGATCY	4 cut(s)	310, 697, 721, 1570
MhlI	GDGCHC	7 cut(s)	268, 397, 633, 965, 1894, 1920, 2062
MlyI	GAGTC	4 cut(s)	896, 1451, 1469, 1505
MmeI	TCCRAC	5 cut(s)	96, 713, 927, 2239, 2624
Mph1103I	ATGCAT	3 cut(s)	598, 1540, 2304
MroI	TCCGGA	1 cut(s)	1213
MroXI	GAANNNNTTC	1 cut(s)	915
MseI	TTAA	6 cut(s)	281, 543, 998, 1482, 2033, 2447
MslI	CAYNNNNRTG	2 cut(s)	34, 1885
MspA1I	CMGCKG	3 cut(s)	230, 1806, 2144
MspI	CCGG	3 cut(s)	235, 1214, 1695
MspR9I	CCNGG	4 cut(s)	354, 1144, 1409, 1612
MunI	CAATTG	1 cut(s)	986
MvaI	CCWGG	4 cut(s)	354, 1144, 1409, 1612
MwoI	GCNNNNNNNGC	6 cut(s)	354, 765, 865, 1736, 2299, 2501
NdeII	GATC	8 cut(s)	224, 310, 697, 721, 1021, 1072, 1363, 1570
NlaIV	GGNNCC	7 cut(s)	723, 1374, 1771, 1893, 1919, 1966, 2280
NmuCI	GTSAC	4 cut(s)	851, 1472, 1490, 2096
NsiI	ATGCAT	3 cut(s)	598, 1540, 2304
NspI	RCATGY	8 cut(s)	70, 493, 778, 1427, 1542, 2015, 2058, 2217
NspV	TTCGAA	1 cut(s)	497
PagI	TCATGA	2 cut(s)	484, 2413
PaqCI	CACCTGC	2 cut(s)	1172, 1991
PciI	ACATGT	3 cut(s)	66, 489, 774
PciSI	GCTCTTC	2 cut(s)	1114, 2502
PdmI	GAANNNNTTC	1 cut(s)	915
PfeI	GAWTC	8 cut(s)	377, 712, 1184, 1519, 1691, 2380, 2410, 2584
PflMI	CCANNNNNTGG	2 cut(s)	692, 732
PfoI	TCCNGGA	1 cut(s)	1142
PkrI	GCNGC	7 cut(s)	324, 478, 1099, 1634, 1738, 1741, 1808
PleI	GAGTC	4 cut(s)	896, 1451, 1469, 1505
PmaCI	CACGTG	1 cut(s)	908
PmlI	CACGTG	1 cut(s)	908
PpsI	GAGTC	4 cut(s)	896, 1451, 1469, 1505
Ppu21I	YACGTR	1 cut(s)	908
PpuMI	RGGWCCY	1 cut(s)	1770
PscI	ACATGT	3 cut(s)	66, 489, 774
PsiI	TTATAA	1 cut(s)	407
Psp124BI	GAGCTC	1 cut(s)	268
Psp1406I	AACGTT	1 cut(s)	730
Psp5II	RGGWCCY	1 cut(s)	1770
Psp6I	CCWGG	4 cut(s)	352, 1142, 1407, 1610
PspCI	CACGTG	1 cut(s)	908
PspGI	CCWGG	4 cut(s)	352, 1142, 1407, 1610
PspN4I	GGNNCC	7 cut(s)	723, 1374, 1771, 1893, 1919, 1966, 2280
PspPI	GGNCC	5 cut(s)	188, 817, 858, 1608, 1770
PspPPI	RGGWCCY	1 cut(s)	1770
PsrI	GAACNNNNNNTAC	2 cut(s)	1784, 1816
PstNI	CAGNNNCTG	2 cut(s)	1574, 2528
PsuI	RGATCY	4 cut(s)	310, 697, 721, 1570
PvuII	CAGCTG	3 cut(s)	230, 1806, 2144
RsaI	GTAC	7 cut(s)	91, 1299, 1355, 1753, 2204, 2541, 2575
RsaNI	GTAC	7 cut(s)	90, 1298, 1354, 1752, 2203, 2540, 2574
RseI	CAYNNNNRTG	2 cut(s)	34, 1885
SacI	GAGCTC	1 cut(s)	268
SapI	GCTCTTC	2 cut(s)	1114, 2502
SaqAI	TTAA	6 cut(s)	281, 543, 998, 1482, 2033, 2447
SatI	GCNGC	7 cut(s)	323, 477, 1098, 1633, 1737, 1740, 1807
Sau3AI	GATC	8 cut(s)	224, 310, 697, 721, 1021, 1072, 1363, 1570
Sau96I	GGNCC	5 cut(s)	188, 817, 858, 1608, 1770
SchI	GAGTC	4 cut(s)	896, 1451, 1469, 1505
ScrFI	CCNGG	4 cut(s)	354, 1144, 1409, 1612
SduI	GDGCHC	7 cut(s)	268, 397, 633, 965, 1894, 1920, 2062
SfaNI	GCATC	8 cut(s)	355, 583, 605, 832, 1525, 1737, 2046, 2339
SfcI	CTRYAG	2 cut(s)	1037, 1302
SfuI	TTCGAA	1 cut(s)	497
SinI	GGWCC	2 cut(s)	817, 1770
SmiMI	CAYNNNNRTG	2 cut(s)	34, 1885
SmlI	CTYRAG	1 cut(s)	2513
SmoI	CTYRAG	1 cut(s)	2513
SsiI	CCGC	3 cut(s)	1097, 2293, 2588
SspI	AATATT	3 cut(s)	1435, 1580, 2314
SspMI	CTAG	2 cut(s)	554, 872
SstI	GAGCTC	1 cut(s)	268
StyD4I	CCNGG	4 cut(s)	352, 1142, 1407, 1610
TaaI	ACNGT	8 cut(s)	17, 203, 249, 1209, 1222, 1874, 1922, 2420
TaiI	ACGT	5 cut(s)	468, 642, 733, 853, 910
TaqI	TCGA	8 cut(s)	176, 299, 497, 900, 1478, 2130, 2426, 2631
TatI	WGTACW	2 cut(s)	2539, 2573
TauI	GCSGC	1 cut(s)	1100
TfiI	GAWTC	8 cut(s)	377, 712, 1184, 1519, 1691, 2380, 2410, 2584
Tru1I	TTAA	6 cut(s)	281, 543, 998, 1482, 2033, 2447
Tru9I	TTAA	6 cut(s)	281, 543, 998, 1482, 2033, 2447
TscAI	CASTG	5 cut(s)	402, 814, 1782, 2067, 2193
TseFI	GTSAC	4 cut(s)	851, 1472, 1490, 2096
TseI	GCWGC	6 cut(s)	322, 476, 1632, 1736, 1739, 1806
Tsp45I	GTSAC	4 cut(s)	851, 1472, 1490, 2096
TspGWI	ACGGA	3 cut(s)	1253, 1279, 1531
TspRI	CASTG	5 cut(s)	402, 814, 1782, 2067, 2193
Van91I	CCANNNNNTGG	2 cut(s)	692, 732
VneI	GTGCAC	2 cut(s)	393, 2058
VpaK11BI	GGWCC	2 cut(s)	817, 1770
XapI	RAATTY	4 cut(s)	409, 888, 954, 1824
XceI	RCATGY	8 cut(s)	70, 493, 778, 1427, 1542, 2015, 2058, 2217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	827
XmnI	GAANNNNTTC	1 cut(s)	915
XspI	CTAG	2 cut(s)	554, 872
Zsp2I	ATGCAT	3 cut(s)	598, 1540, 2304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.