Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010362

Physical Location & Seq

Genomic Coordinates Forward (+)

3472960 .. 3474327

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0040000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAAGAAGTGTGAGCTGTGTGATTCTGTGGCAAAGATGTACTGTGAATCAGATCAGGCTAGTCTGTGTTGGGATTGTGACATCAAGGTTCACGGTGCAAACTTCTTGGTGGCGAAGCATTTAAGGACTCTGCTCTGCCATGTCTGTCAATCTCTAACCCCATGGAATGCCTCTGGACCCAAGCTTGGTCCTACTGTTTCAGTTTGTGAGAATTGTGTGAACAGTTCTAACAAGGAGTCCACAAATGAAGAAGAAGAAGAACATGATGATGATGATCATGAAGAAAATAGCATTGGAGAAGATGATGAACATGATGGTGGTGGTGGTGACAATGGCGCTGATGATAACGATGGTGGTAATGATGATGATGATGATGAGGAGAATCAAGTTGTTCCATGGTCATCTAGCTCTTCAACTCCACCAAACTCAAGTTCTTTAAGTGATGAAGAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

151

Amino Acids

16.36

Weight (kDa)

4.05

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	2 - 40	5.1e-07	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30650 AT2G34830 AT2G34830
fragaria_vesca	FvH4_3g11140
malus_domestica	MD05G1265200.v1.1 MD10G1243000.v1.1
prunus_persica	Prupe.4G101100_v2.0.a1
pyrus_communis	pycom05g24920 pycom05g24930 pycom10g20330
rosa_chinensis	RchiOBHm_Chr5g0018041
rosa_laevigata	RLG00000032335
rosa_multiflora	Rmu_sc0010280.1_g000014
rosa_roxburghii	Rroxscaffold_1G00059580
rosa_rugosa	Rorug05G0040000
rosa_samantha	Rh5AG132800 Rh5BG131100 Rh5BG131300 Rh5CG143300 Rh5DG133000
rosa_wichuraiana	Rw5G011560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	414
AjuI	GAANNNNNNNTTGG	4 cut(s)	276, 308, 415, 447
AluBI	AGCT	3 cut(s)	16, 184, 408
AluI	AGCT	3 cut(s)	16, 184, 408
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	176, 188
AsuHPI	GGTGA	1 cut(s)	338
AvaII	GGWCC	2 cut(s)	176, 188
BccI	CCATC	2 cut(s)	308, 344
BclI	TGATCA	1 cut(s)	274
BfaI	CTAG	2 cut(s)	60, 405
BfoI	RGCGCY	1 cut(s)	339
Bme18I	GGWCC	2 cut(s)	176, 188
BmgT120I	GGNCC	2 cut(s)	176, 188
BmiI	GGNNCC	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	412
BsaBI	GATNNNNATC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	161, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse8I	GATNNNNATC	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	161, 395
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseRI	GAGGAG	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	172
Bsp143I	GATC	2 cut(s)	52, 274
Bsp19I	CCATGG	2 cut(s)	161, 395
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	178
BspQI	GCTCTTC	1 cut(s)	415
BssECI	CCNNGG	2 cut(s)	161, 395
BssMI	GATC	2 cut(s)	52, 274
BssT1I	CCWWGG	2 cut(s)	161, 395
Bst4CI	ACNGT	4 cut(s)	44, 95, 196, 224
Bst6I	CTCTTC	1 cut(s)	415
BstDSI	CCRYGG	2 cut(s)	161, 395
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	2 cut(s)	55, 277
BstMBI	GATC	2 cut(s)	52, 274
BtgI	CCRYGG	2 cut(s)	161, 395
CciI	TCATGA	1 cut(s)	277
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	2 cut(s)	176, 188
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	6 cut(s)	140, 162, 263, 278, 311, 396
CviJI	RGCY	4 cut(s)	16, 59, 184, 408
CviKI_1	RGCY	4 cut(s)	16, 59, 184, 408
CviQI	GTAC	1 cut(s)	40
DpnI	GATC	2 cut(s)	54, 276
DpnII	GATC	2 cut(s)	52, 274
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
Eco130I	CCWWGG	2 cut(s)	161, 395
Eco47I	GGWCC	2 cut(s)	176, 188
EcoT14I	CCWWGG	2 cut(s)	161, 395
ErhI	CCWWGG	2 cut(s)	161, 395
FaeI	CATG	6 cut(s)	143, 165, 266, 281, 314, 399
FaiI	YATR	6 cut(s)	141, 163, 264, 279, 312, 397
FatI	CATG	6 cut(s)	139, 161, 262, 277, 310, 395
FbaI	TGATCA	1 cut(s)	274
FspBI	CTAG	2 cut(s)	60, 405
GlaI	GCGC	1 cut(s)	337
HaeII	RGCGCY	1 cut(s)	339
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	6 cut(s)	143, 165, 266, 281, 314, 399
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	5 cut(s)	23, 47, 127, 236, 382
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	3 cut(s)	91, 220, 240
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	2 cut(s)	174, 278
Hpy8I	GTNNAC	3 cut(s)	91, 220, 240
HpyCH4III	ACNGT	4 cut(s)	44, 95, 196, 224
HpyCH4V	TGCA	1 cut(s)	98
Hsp92II	CATG	6 cut(s)	143, 165, 266, 281, 314, 399
HspAI	GCGC	1 cut(s)	336
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	52, 274
LguI	GCTCTTC	1 cut(s)	415
LpnPI	CCDG	2 cut(s)	41, 159
MaeI	CTAG	2 cut(s)	60, 405
MaeIII	GTNAC	2 cut(s)	77, 326
MalI	GATC	2 cut(s)	54, 276
MboI	GATC	2 cut(s)	52, 274
MboII	GAAGA	8 cut(s)	16, 260, 263, 266, 269, 293, 311, 402
MluCI	AATT	1 cut(s)	211
MlyI	GAGTC	2 cut(s)	121, 245
MnlI	CCTC	2 cut(s)	181, 370
MseI	TTAA	2 cut(s)	122, 437
MslI	CAYNNNNRTG	2 cut(s)	267, 315
Mva1269I	GAATGC	1 cut(s)	172
NcoI	CCATGG	2 cut(s)	161, 395
NdeII	GATC	2 cut(s)	52, 274
NlaIII	CATG	6 cut(s)	143, 165, 266, 281, 314, 399
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	2 cut(s)	77, 326
PagI	TCATGA	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	415
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	3 cut(s)	23, 47, 382
PleI	GAGTC	2 cut(s)	121, 244
PpsI	GAGTC	2 cut(s)	121, 244
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	2 cut(s)	176, 188
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	2 cut(s)	267, 315
SapI	GCTCTTC	1 cut(s)	415
SaqAI	TTAA	2 cut(s)	122, 437
Sau3AI	GATC	2 cut(s)	52, 274
Sau96I	GGNCC	2 cut(s)	176, 188
SchI	GAGTC	2 cut(s)	121, 245
SetI	ASST	4 cut(s)	18, 90, 186, 410
SinI	GGWCC	2 cut(s)	176, 188
SmiMI	CAYNNNNRTG	2 cut(s)	267, 315
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	1 cut(s)	211
SspMI	CTAG	2 cut(s)	60, 405
StyI	CCWWGG	2 cut(s)	161, 395
TaaI	ACNGT	4 cut(s)	44, 95, 196, 224
TasI	AATT	1 cut(s)	211
TatI	WGTACW	1 cut(s)	39
TfiI	GAWTC	3 cut(s)	23, 47, 382
Tru1I	TTAA	2 cut(s)	122, 437
Tru9I	TTAA	2 cut(s)	122, 437
TseFI	GTSAC	2 cut(s)	77, 326
Tsp45I	GTSAC	2 cut(s)	77, 326
TspDTI	ATGAA	4 cut(s)	17, 261, 294, 321
VpaK11BI	GGWCC	2 cut(s)	176, 188
XspI	CTAG	2 cut(s)	60, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.