Rorug05G0167100

Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
15520963 .. 15522780
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0167100.1

Sequence Viewer

Length: 1437 bp
ATGATCAGGAGAGCAGACACTGATAGACCTTCTCTTCATTTGGTGTATGAATGGTGGGATAGTATGATTGAGCAAGTGAAGAAAGCTATCTATAGGAAAGAAAGGAAGCAACCTCATCAAGAGTCTCCATTTTGGGATGCGGTGTATAAGGTTCTAATGGCTCGTTGGTCCAAGAGCAATACTTCTCTCAATTGCTTGGCACATTCATTGAATCCGAAGTATTATAGTTCGGAATGGCTTAGTGAAGATACTAATCGTGTTGCTCCCCACAAAGATTTAGAGATTACAAGGGAGAGGAAAAATTGTATCCTTAGATACTTTGCCAATGAAGATGATCGAAGGAAAGTTAACATAGAATTTGCCAATTTTTCTATGTGCATGCAAGAGTTTGGAAGTGGAGATGCTATGAAGGATAGGTTTATTATGCAGCCTATAACATGGTGGGCTGTCCATGGAGCTTCGGCACCATCTCTCCAAGCCATAGCCTTCAAGGTTCTAGGTCAACCTTGTTCTTCTTCATGTTGTGAAAGAAATTGGAGTACTTACAATTTCATTCACTCTGTGAGGAGGAACAAGATAACACCACAAAGAGCGGAAGATTTGGTGTTTGTGCATACCAATCTTCGCCTTTTAGCTAGAAGAAGCCCAAGTTATAATGAGAGTGCAACTCAAATGTGGGATGTTGGAGGTGATGAGTTTGATTCTTTGGAAGAGACTAATGTTGGAAGGCTTGAGATTGCTAACCTTTCACTTGATGAACCACAATTAGAGGGGGTTTTGTTTGAAGATGAAGACCTTGAGGATGTTGTCCAAGACAGGACTCTGAATTTGGTGAATAGCATTGATTTCTCATCAAATAACTTAGAAGGTGTAATCCCTGAAGAAATAAGCAGCCTCAGACTCTTGGGAACGTTGAATTTGTCAAGAAATCAACTAACTGGAAACATTCCCTCAAAGATTGGAAACTTGCGGTGGCTGGAAACTCTTGATCTCTCACACAATCACCTCTCGGGGCAGATTCCTCAAAGTTTCTCTTCATTGACCTCTTTGGCTCACTTGAACTTGTCTTTCAACAACTTGTCTGGAAGAATTCCTTCAGGCAACCAACTTCAAACACTCAATGATTCATCCATTTACGAACACAATCCATCCTTGTGTGGGGTTCCTCTTTCAACTGTCTGCCCGGGAGATGGCGCACTCGCACCAGCTGACCTTGATGATGGTGATCATAATGATGATGATACTGATGAGAATGGGAAGTTTGGTATCTATGTTAGCGCTGTCCTCGGCTTCATCATAGGCTTCTGGAGTGTTTGTGGCACATTGGTTATGAAGAAATCATGGAGGTATGCCTATTTTCGATTCTTTGATAACATAAAGGAGAGGGCAGCATTAGCAATTGCATTGAGAGTGGCTCGTTGGCAAAGGAAGACTTGA

Protein Analysis

478

Amino Acids

54.5

Weight (kDa)

5.62

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 141 - 208 7.5e-12 hAT family C-terminal dimerisation region
LRR_14 PF23598 286 - 380 7e-09 Leucine-rich repeat region
LRR_8 PF13855 321 - 360 3e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 654
AccB1I GGYRCC 1 cut(s) 463
AccBSI CCGCTC 1 cut(s) 593
AciI CCGC 3 cut(s) 140, 593, 970
AclI AACGTT 1 cut(s) 911
AcsI RAATTY 4 cut(s) 356, 826, 916, 1089
AcuI CTGAAG 2 cut(s) 900, 1080
AdeI CACNNNGTG 1 cut(s) 562
AfaI GTAC 1 cut(s) 541
AfeI AGCGCT 1 cut(s) 1279
AfiI CCNNNNNNNGG 2 cut(s) 1158, 1190
AgsI TTSAA 8 cut(s) 211, 490, 785, 916, 1060, 1072, 1112, 1173
AluBI AGCT 4 cut(s) 86, 458, 635, 1208
AluI AGCT 4 cut(s) 86, 458, 635, 1208
Alw26I GTCTC 2 cut(s) 129, 707
AlwNI CAGNNNCTG 1 cut(s) 20
Ama87I CYCGRG 2 cut(s) 1009, 1183
Aor51HI AGCGCT 1 cut(s) 1279
ApeKI GCWGC 3 cut(s) 427, 891, 1388
ApoI RAATTY 4 cut(s) 356, 826, 916, 1089
ArsI GACNNNNNNTTYG 2 cut(s) 811, 843
Asp700I GAANNNNTTC 1 cut(s) 1093
AspLEI GCGC 2 cut(s) 1196, 1280
AspS9I GGNCC 1 cut(s) 168
AsuC2I CCSGG 2 cut(s) 1184, 1185
AsuHPI GGTGA 4 cut(s) 701, 844, 995, 1235
AvaI CYCGRG 2 cut(s) 1009, 1183
AvaII GGWCC 1 cut(s) 168
BanI GGYRCC 1 cut(s) 463
BbsI GAAGAC 1 cut(s) 798
BbvI GCAGC 3 cut(s) 439, 903, 1400
BccI CCATC 4 cut(s) 475, 1156, 1184, 1214
BciVI GTATCC 1 cut(s) 317
BclI TGATCA 2 cut(s) 3, 1225
BcnI CCSGG 2 cut(s) 1184, 1185
BcoDI GTCTC 2 cut(s) 129, 707
BfaI CTAG 2 cut(s) 497, 636
BfmI CTRYAG 1 cut(s) 91
BfoI RGCGCY 1 cut(s) 1281
BfuI GTATCC 1 cut(s) 317
BisI GCNGC 3 cut(s) 428, 892, 1389
BlsI GCNGC 3 cut(s) 429, 893, 1390
BmcAI AGTACT 1 cut(s) 541
Bme1390I CCNGG 2 cut(s) 1184, 1185
Bme18I GGWCC 1 cut(s) 168
BmeT110I CYCGRG 2 cut(s) 1009, 1183
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 2 cut(s) 465, 1164
BmrFI CCNGG 2 cut(s) 1184, 1185
BmsI GCATC 2 cut(s) 127, 391
BpiI GAAGAC 1 cut(s) 798
BplI GAGNNNNNCTC 4 cut(s) 652, 684, 1399, 1431
BpmI CTGGAG 1 cut(s) 1327
BpuEI CTTGAG 2 cut(s) 752, 818
BpuMI CCSGG 2 cut(s) 1184, 1185
BsaBI GATNNNNATC 2 cut(s) 252, 1224
BsaJI CCNNGG 3 cut(s) 451, 1183, 1285
BsaXI ACNNNNNCTCC 4 cut(s) 456, 486, 1300, 1330
Bsc4I CCNNNNNNNGG 2 cut(s) 1158, 1190
Bse1I ACTGG 1 cut(s) 943
Bse8I GATNNNNATC 2 cut(s) 252, 1224
BseDI CCNNGG 3 cut(s) 451, 1183, 1285
BseGI GGATG 5 cut(s) 142, 685, 808, 1127, 1148
BseJI GATNNNNATC 2 cut(s) 252, 1224
BseLI CCNNNNNNNGG 2 cut(s) 1158, 1190
BseMII CTCAG 1 cut(s) 910
BseNI ACTGG 1 cut(s) 943
BseRI GAGGAG 1 cut(s) 580
BseXI GCAGC 3 cut(s) 439, 903, 1400
BshNI GGYRCC 1 cut(s) 463
BsiHKCI CYCGRG 2 cut(s) 1009, 1183
BsiSI CCGG 1 cut(s) 1184
BslI CCNNNNNNNGG 2 cut(s) 1158, 1190
BsmAI GTCTC 2 cut(s) 129, 707
BsoBI CYCGRG 2 cut(s) 1009, 1183
Bsp143I GATC 4 cut(s) 3, 334, 988, 1225
Bsp19I CCATGG 1 cut(s) 451
BspACI CCGC 3 cut(s) 140, 593, 970
BspCNI CTCAG 1 cut(s) 909
BspLI GGNNCC 2 cut(s) 465, 1164
BspT107I GGYRCC 1 cut(s) 463
BsrBI CCGCTC 1 cut(s) 593
BsrI ACTGG 1 cut(s) 943
BssECI CCNNGG 3 cut(s) 451, 1183, 1285
BssMI GATC 4 cut(s) 3, 334, 988, 1225
BssT1I CCWWGG 1 cut(s) 451
Bst4CI ACNGT 1 cut(s) 1177
Bst6I CTCTTC 3 cut(s) 39, 705, 1039
BstC8I GCNNGC 1 cut(s) 380
BstDEI CTNAG 4 cut(s) 239, 311, 862, 896
BstDSI CCRYGG 1 cut(s) 451
BstF5I GGATG 5 cut(s) 142, 685, 808, 1127, 1148
BstH2I RGCGCY 1 cut(s) 1281
BstHHI GCGC 2 cut(s) 1196, 1280
BstKTI GATC 4 cut(s) 6, 337, 991, 1228
BstMAI GTCTC 2 cut(s) 129, 707
BstMBI GATC 4 cut(s) 3, 334, 988, 1225
BstMWI GCNNNNNNNGC 1 cut(s) 1394
BstNSI RCATGY 1 cut(s) 382
BstSCI CCNGG 2 cut(s) 1182, 1183
BstSFI CTRYAG 1 cut(s) 91
BstV1I GCAGC 3 cut(s) 439, 903, 1400
BstV2I GAAGAC 1 cut(s) 798
BsuI GTATCC 1 cut(s) 317
BtgI CCRYGG 1 cut(s) 451
BtsCI GGATG 5 cut(s) 142, 685, 808, 1127, 1148
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 380
CaiI CAGNNNCTG 1 cut(s) 20
CfoI GCGC 2 cut(s) 1196, 1280
Cfr13I GGNCC 1 cut(s) 168
Cfr9I CCCGGG 1 cut(s) 1183
Csp6I GTAC 1 cut(s) 540
CviAII CATG 5 cut(s) 379, 438, 452, 519, 1341
CviQI GTAC 1 cut(s) 540
DdeI CTNAG 4 cut(s) 239, 311, 862, 896
DpnI GATC 4 cut(s) 5, 336, 990, 1227
DpnII GATC 4 cut(s) 3, 334, 988, 1225
DraIII CACNNNGTG 1 cut(s) 562
Eam1104I CTCTTC 3 cut(s) 39, 705, 1039
EarI CTCTTC 3 cut(s) 39, 705, 1039
Eco130I CCWWGG 1 cut(s) 451
Eco47I GGWCC 1 cut(s) 168
Eco47III AGCGCT 1 cut(s) 1279
Eco57I CTGAAG 2 cut(s) 900, 1080
Eco88I CYCGRG 2 cut(s) 1009, 1183
EcoRI GAATTC 1 cut(s) 1089
EcoT14I CCWWGG 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 5 cut(s) 382, 441, 455, 522, 1344
FalI AAGNNNNNCTT 5 cut(s) 1018, 1050, 1078, 1110, 1417
FatI CATG 5 cut(s) 378, 437, 451, 518, 1340
FbaI TGATCA 2 cut(s) 3, 1225
Fnu4HI GCNGC 3 cut(s) 428, 892, 1389
FokI GGATG 5 cut(s) 149, 692, 815, 1114, 1135
Fsp4HI GCNGC 3 cut(s) 428, 892, 1389
FspBI CTAG 2 cut(s) 497, 636
GlaI GCGC 2 cut(s) 1195, 1279
GluI GCNGC 3 cut(s) 428, 892, 1389
GsuI CTGGAG 1 cut(s) 1327
HaeII RGCGCY 1 cut(s) 1281
HapII CCGG 1 cut(s) 1184
HhaI GCGC 2 cut(s) 1196, 1280
Hin1II CATG 5 cut(s) 382, 441, 455, 522, 1344
Hin6I GCGC 2 cut(s) 1194, 1278
HinP1I GCGC 2 cut(s) 1194, 1278
HincII GTYRAC 2 cut(s) 349, 503
HindII GTYRAC 2 cut(s) 349, 503
HinfI GANTC 8 cut(s) 122, 211, 701, 820, 900, 1018, 1124, 1362
HpaI GTTAAC 1 cut(s) 349
HpaII CCGG 1 cut(s) 1184
HphI GGTGA 4 cut(s) 701, 844, 995, 1235
Hpy166II GTNNAC 2 cut(s) 349, 503
Hpy188I TCNGA 4 cut(s) 216, 232, 825, 899
Hpy188III TCNNGA 6 cut(s) 7, 119, 924, 986, 1083, 1306
Hpy8I GTNNAC 2 cut(s) 349, 503
HpyAV CCTTC 7 cut(s) 39, 333, 403, 496, 720, 860, 1104
HpyCH4III ACNGT 1 cut(s) 1177
HpyCH4IV ACGT 1 cut(s) 911
HpyCH4V TGCA 6 cut(s) 378, 382, 427, 613, 665, 1403
HpyF10VI GCNNNNNNNGC 1 cut(s) 1394
HpyF3I CTNAG 4 cut(s) 239, 311, 862, 896
HpySE526I ACGT 1 cut(s) 911
Hsp92II CATG 5 cut(s) 382, 441, 455, 522, 1344
HspAI GCGC 2 cut(s) 1194, 1278
Ksp22I TGATCA 2 cut(s) 3, 1225
KspAI GTTAAC 1 cut(s) 349
Kzo9I GATC 4 cut(s) 3, 334, 988, 1225
LmnI GCTCC 2 cut(s) 268, 455
LpnPI CCDG 9 cut(s) 802, 891, 924, 962, 1068, 1083, 1197, 1218, 1291
Lsp1109I GCAGC 3 cut(s) 439, 903, 1400
LweI GCATC 2 cut(s) 127, 391
MaeI CTAG 2 cut(s) 497, 636
MaeII ACGT 1 cut(s) 911
MalI GATC 4 cut(s) 5, 336, 990, 1227
MbiI CCGCTC 1 cut(s) 593
MboI GATC 4 cut(s) 3, 334, 988, 1225
MfeI CAATTG 2 cut(s) 190, 1398
MlyI GAGTC 3 cut(s) 131, 814, 894
MmeI TCCRAC 2 cut(s) 664, 703
MroXI GAANNNNTTC 1 cut(s) 1093
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 2 cut(s) 1153, 1233
MspA1I CMGCKG 1 cut(s) 1208
MspI CCGG 1 cut(s) 1184
MspR9I CCNGG 2 cut(s) 1184, 1185
MunI CAATTG 2 cut(s) 190, 1398
MwoI GCNNNNNNNGC 1 cut(s) 1394
NciI CCSGG 2 cut(s) 1184, 1185
NcoI CCATGG 1 cut(s) 451
NdeII GATC 4 cut(s) 3, 334, 988, 1225
NlaIII CATG 5 cut(s) 382, 441, 455, 522, 1344
NlaIV GGNNCC 2 cut(s) 465, 1164
NmeAIII GCCGAG 1 cut(s) 1266
NspI RCATGY 1 cut(s) 382
PaeI GCATGC 1 cut(s) 382
PdmI GAANNNNTTC 1 cut(s) 1093
PfeI GAWTC 5 cut(s) 211, 701, 1018, 1124, 1362
PkrI GCNGC 3 cut(s) 429, 893, 1390
PleI GAGTC 3 cut(s) 130, 814, 894
PpsI GAGTC 3 cut(s) 130, 814, 894
PsiI TTATAA 1 cut(s) 654
Psp1406I AACGTT 1 cut(s) 911
PspN4I GGNNCC 2 cut(s) 465, 1164
PspPI GGNCC 1 cut(s) 168
PstNI CAGNNNCTG 1 cut(s) 20
PvuII CAGCTG 1 cut(s) 1208
RsaI GTAC 1 cut(s) 541
RsaNI GTAC 1 cut(s) 540
RseI CAYNNNNRTG 2 cut(s) 1153, 1233
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 3 cut(s) 428, 892, 1389
Sau3AI GATC 4 cut(s) 3, 334, 988, 1225
Sau96I GGNCC 1 cut(s) 168
ScaI AGTACT 1 cut(s) 541
SchI GAGTC 3 cut(s) 131, 814, 894
ScrFI CCNGG 2 cut(s) 1184, 1185
SfaNI GCATC 2 cut(s) 127, 391
SfcI CTRYAG 1 cut(s) 91
SinI GGWCC 1 cut(s) 168
SmaI CCCGGG 1 cut(s) 1185
SmiMI CAYNNNNRTG 2 cut(s) 1153, 1233
SmlI CTYRAG 2 cut(s) 731, 797
SmoI CTYRAG 2 cut(s) 731, 797
SphI GCATGC 1 cut(s) 382
SsiI CCGC 3 cut(s) 140, 593, 970
SspMI CTAG 2 cut(s) 497, 636
StyD4I CCNGG 2 cut(s) 1182, 1183
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 1 cut(s) 1177
TaiI ACGT 1 cut(s) 914
TaqI TCGA 2 cut(s) 337, 1360
TatI WGTACW 1 cut(s) 539
TfiI GAWTC 5 cut(s) 211, 701, 1018, 1124, 1362
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 1 cut(s) 25
TseI GCWGC 3 cut(s) 427, 891, 1388
TspMI CCCGGG 1 cut(s) 1183
TspRI CASTG 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 168
XapI RAATTY 4 cut(s) 356, 826, 916, 1089
XceI RCATGY 1 cut(s) 382
XmaI CCCGGG 1 cut(s) 1183
XmnI GAANNNNTTC 1 cut(s) 1093
XspI CTAG 2 cut(s) 497, 636
ZrmI AGTACT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.