Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003236

Physical Location & Seq

Genomic Coordinates Forward (+)

23615603 .. 23617367

Gene Structure 1765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0227400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGTTACATGGCTACAGAATATGTGACCACAGGGAAGGGTAGCAAGCAGTCAGATGTGTATAGTTTCGGAGTTGTTGCTTTGGAAATTGCTTGCAGGAGAAAACCAAGCGACCCCAAATTTGAAAGCCGTGAAGTCAGTATGATGGAGTGGGTTTGGGAGCTTTATGGAGAAGGGAAAATACTCGAAGCAGCAGACCCGAAACTATGTGGAGATTTTGATGAGAAGCAATTAGAGCGCTTGTTGATTGTTGGGTTGTGGTGTGCTCACCTAAACGTTACTTCCGACTGCGTCACGATCCAAGTGCTCAACTTCGAAGATCCGCTGCCCATCCTCCCATCAAATATTTCAATGATCAGCTCTTATTTTGCTCCTTTTGTCTCAGTCCTACTATTTAATTGTGACACTACTAGTTCAGGAAGAGTCAAGCCGAGTCTAGCTGCTAGTATTCCTTTCTTGCACCCAAGTCATTTCCAAGTTTTGCAAGAGATTTGCCATCACATTTGTTACTCTAAGAATAGGCATGGTGTACTCGAATCGAATCAAAATGATCAATTGATCACAACTTTTGAGTCTTCTTCGATGCGGGATTTTCTACAACCAACTAATCTTGTAGCCTGGAGTCTAGAAATAAGAGCAAGGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04622 map04622

Pfam Domains

Protein Families

OTU

Protein Analysis

215

Amino Acids

24.24

Weight (kDa)

5.35

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27350 AT2G27350 AT2G27350 AT2G27350 AT2G27350 AT2G27350
fragaria_vesca	FvH4_3g25610 FvH4_3g25610 FvH4_3g25610
malus_domestica	MD03G1149500.v1.1 MD11G1168400.v1.1
prunus_persica	Prupe.6G135500_v2.0.a1 Prupe.6G135500_v2.0.a1 Prupe.6G135500_v2.0.a1 Prupe.6G135500_v2.0.a1 Prupe.6G135500_v2.0.a1 Prupe.6G135500_v2.0.a1 Prupe.6G135500_v2.0.a1 Prupe.6G135500_v2.0.a1 Prupe.6G135500_v2.0.a1 Prupe.6G135500_v2.0.a1 Prupe.6G135500_v2.0.a1
pyrus_communis	pycom03g10340 pycom11g14110
rosa_chinensis	RchiOBHm_Chr5g0045751
rosa_laevigata	RLG00000034406
rosa_multiflora	Rmu_sc0005605.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035070
rosa_rugosa	Rorug05G0227100 Rorug05G0227200 Rorug05G0227300 Rorug05G0227400
rosa_samantha	Rh5AG308100 Rh5BG316900 Rh5CG342900 Rh5DG327200
rosa_wichuraiana	Rw5G028860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	323, 586
AclI	AACGTT	1 cut(s)	276
AclWI	GGATC	2 cut(s)	292, 314
AcsI	RAATTY	1 cut(s)	119
AfaI	GTAC	1 cut(s)	531
AfeI	AGCGCT	1 cut(s)	239
AgsI	TTSAA	2 cut(s)	125, 351
AhlI	ACTAGT	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	617
AluBI	AGCT	3 cut(s)	163, 360, 440
AluI	AGCT	3 cut(s)	163, 360, 440
Alw21I	GWGCWC	2 cut(s)	268, 309
Alw26I	GTCTC	1 cut(s)	385
AlwI	GGATC	2 cut(s)	292, 314
Aor51HI	AGCGCT	1 cut(s)	239
AoxI	GGCC	1 cut(s)	641
ApeKI	GCWGC	3 cut(s)	191, 325, 440
ApoI	RAATTY	1 cut(s)	119
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	642
AsuHPI	GGTGA	1 cut(s)	260
AsuII	TTCGAA	1 cut(s)	315
BarI	GAAGNNNNNNTAC	2 cut(s)	165, 197
BbsI	GAAGAC	1 cut(s)	567
Bbv12I	GWGCWC	2 cut(s)	268, 309
BbvI	GCAGC	3 cut(s)	203, 312, 427
BccI	CCATC	4 cut(s)	139, 338, 346, 504
BceAI	ACGGC	1 cut(s)	114
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciT130I	CCWGG	1 cut(s)	619
BclI	TGATCA	3 cut(s)	354, 550, 558
BcoDI	GTCTC	1 cut(s)	385
BcuI	ACTAGT	1 cut(s)	410
BfaI	CTAG	4 cut(s)	411, 437, 444, 626
BfmI	CTRYAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	241
BisI	GCNGC	3 cut(s)	192, 326, 441
BlsI	GCNGC	3 cut(s)	193, 327, 442
Bme1390I	CCNGG	1 cut(s)	619
BmgT120I	GGNCC	1 cut(s)	642
BmrFI	CCNGG	1 cut(s)	619
BmsI	GCATC	1 cut(s)	573
BpiI	GAAGAC	1 cut(s)	567
BpmI	CTGGAG	1 cut(s)	640
Bpu14I	TTCGAA	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	619
BseGI	GGATG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	396
BseXI	GCAGC	3 cut(s)	203, 312, 427
BshFI	GGCC	1 cut(s)	643
BsiHKAI	GWGCWC	2 cut(s)	268, 309
BsmAI	GTCTC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	643
Bsp119I	TTCGAA	1 cut(s)	315
Bsp1286I	GDGCHC	2 cut(s)	268, 309
Bsp143I	GATC	5 cut(s)	297, 319, 354, 550, 558
BspACI	CCGC	2 cut(s)	323, 586
BspANI	GGCC	1 cut(s)	643
BspCNI	CTCAG	1 cut(s)	395
BspPI	GGATC	2 cut(s)	292, 314
BspT104I	TTCGAA	1 cut(s)	315
BssMI	GATC	5 cut(s)	297, 319, 354, 550, 558
Bst2UI	CCWGG	1 cut(s)	619
Bst6I	CTCTTC	1 cut(s)	415
BstBI	TTCGAA	1 cut(s)	315
BstC8I	GCNNGC	2 cut(s)	47, 94
BstDEI	CTNAG	2 cut(s)	382, 513
BstF5I	GGATG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	5 cut(s)	300, 322, 357, 553, 561
BstMAI	GTCTC	1 cut(s)	385
BstMBI	GATC	5 cut(s)	297, 319, 354, 550, 558
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstNI	CCWGG	1 cut(s)	619
BstSCI	CCNGG	1 cut(s)	617
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	3 cut(s)	203, 312, 427
BstV2I	GAAGAC	1 cut(s)	567
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	643
BtsCI	GGATG	1 cut(s)	330
Cac8I	GCNNGC	2 cut(s)	47, 94
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	642
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	530
CviAII	CATG	2 cut(s)	10, 524
CviJI	RGCY	8 cut(s)	14, 129, 163, 360, 430, 440, 617, 643
CviKI_1	RGCY	8 cut(s)	14, 129, 163, 360, 430, 440, 617, 643
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	2 cut(s)	382, 513
DpnI	GATC	5 cut(s)	299, 321, 356, 552, 560
DpnII	GATC	5 cut(s)	297, 319, 354, 550, 558
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
Eco47III	AGCGCT	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	642
EcoRII	CCWGG	1 cut(s)	617
FaeI	CATG	2 cut(s)	13, 527
FaiI	YATR	7 cut(s)	11, 24, 63, 143, 168, 208, 525
FatI	CATG	2 cut(s)	9, 523
FauI	CCCGC	1 cut(s)	579
FbaI	TGATCA	3 cut(s)	354, 550, 558
Fnu4HI	GCNGC	3 cut(s)	192, 326, 441
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	3 cut(s)	192, 326, 441
FspBI	CTAG	4 cut(s)	411, 437, 444, 626
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	3 cut(s)	192, 326, 441
GsuI	CTGGAG	1 cut(s)	640
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	1 cut(s)	643
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	2 cut(s)	13, 527
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	6 cut(s)	423, 433, 536, 541, 572, 622
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	1 cut(s)	530
Hpy188I	TCNGA	3 cut(s)	55, 71, 286
Hpy188III	TCNNGA	3 cut(s)	295, 417, 626
Hpy8I	GTNNAC	1 cut(s)	530
HpyAV	CCTTC	2 cut(s)	31, 167
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	3 cut(s)	96, 460, 484
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
HpyF3I	CTNAG	2 cut(s)	382, 513
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	13, 527
HspAI	GCGC	1 cut(s)	238
Ksp22I	TGATCA	3 cut(s)	354, 550, 558
Kzo9I	GATC	5 cut(s)	297, 319, 354, 550, 558
LmnI	GCTCC	2 cut(s)	160, 376
LpnPI	CCDG	5 cut(s)	18, 82, 402, 604, 631
Lsp1109I	GCAGC	3 cut(s)	203, 312, 427
LweI	GCATC	1 cut(s)	573
MaeI	CTAG	4 cut(s)	411, 437, 444, 626
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	6 cut(s)	5, 25, 277, 292, 401, 506
MalI	GATC	5 cut(s)	299, 321, 356, 552, 560
MboI	GATC	5 cut(s)	297, 319, 354, 550, 558
MboII	GAAGA	4 cut(s)	329, 432, 567, 570
MfeI	CAATTG	1 cut(s)	554
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	2 cut(s)	268, 309
MluCI	AATT	5 cut(s)	87, 119, 230, 397, 554
MlyI	GAGTC	4 cut(s)	432, 442, 581, 631
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	1 cut(s)	344
MseI	TTAA	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	325
MspR9I	CCNGG	1 cut(s)	619
MunI	CAATTG	1 cut(s)	554
MvaI	CCWGG	1 cut(s)	619
MwoI	GCNNNNNNNGC	1 cut(s)	235
NdeII	GATC	5 cut(s)	297, 319, 354, 550, 558
NlaIII	CATG	2 cut(s)	13, 527
NmeAIII	GCCGAG	1 cut(s)	456
NmuCI	GTSAC	3 cut(s)	25, 292, 401
NspV	TTCGAA	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	536, 541
PflFI	GACNNNGTC	1 cut(s)	290
PkrI	GCNGC	3 cut(s)	193, 327, 442
PleI	GAGTC	4 cut(s)	431, 441, 580, 630
PpsI	GAGTC	4 cut(s)	431, 441, 580, 630
Psp1406I	AACGTT	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	617
PspGI	CCWGG	1 cut(s)	617
PspPI	GGNCC	1 cut(s)	642
PsuI	RGATCY	1 cut(s)	319
PsyI	GACNNNGTC	1 cut(s)	290
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	3 cut(s)	192, 326, 441
Sau3AI	GATC	5 cut(s)	297, 319, 354, 550, 558
Sau96I	GGNCC	1 cut(s)	642
SchI	GAGTC	4 cut(s)	432, 442, 581, 631
ScrFI	CCNGG	1 cut(s)	619
SduI	GDGCHC	2 cut(s)	268, 309
SetI	ASST	5 cut(s)	165, 273, 279, 362, 442
SfaNI	GCATC	1 cut(s)	573
SfcI	CTRYAG	1 cut(s)	15
SfuI	TTCGAA	1 cut(s)	315
SpeI	ACTAGT	1 cut(s)	410
Sse9I	AATT	5 cut(s)	87, 119, 230, 397, 554
SsiI	CCGC	2 cut(s)	323, 586
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	4 cut(s)	411, 437, 444, 626
StyD4I	CCNGG	1 cut(s)	617
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	5 cut(s)	186, 315, 534, 539, 581
TasI	AATT	5 cut(s)	87, 119, 230, 397, 554
TatI	WGTACW	1 cut(s)	529
TfiI	GAWTC	2 cut(s)	536, 541
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TseFI	GTSAC	3 cut(s)	25, 292, 401
TseI	GCWGC	3 cut(s)	191, 325, 440
Tsp45I	GTSAC	3 cut(s)	25, 292, 401
Tth111I	GACNNNGTC	1 cut(s)	290
XapI	RAATTY	1 cut(s)	119
XbaI	TCTAGA	1 cut(s)	625
XspI	CTAG	4 cut(s)	411, 437, 444, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.