Rh5AG308100

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003236
Physical Location & Seq
Reverse (-)
44238147 .. 44245942
7796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG308100.1

Sequence Viewer

Length: 1173 bp
ATGACTAGGATTCTGGTTCAGCGAGGTTCCTCAAGTGGTTCTTCTTCCAACCCAAGCCGCTCTTCTTCCTTGTCTGGCTCTTCCTCGGCTTGGTCACAGCCACAGGTTAATACTCCTCAGGTCCTCTCGGCTGTGAAAGATGAGGATGTTGAAGAGGAGCCACAGGAACTTGTTATTGTGGATGATCCTTCAGAGAATTGTGGGAGTAGTGACAATAATGCCGTGAAAAATGATGATGTTTTGATGGAAAACACTCATAATGATCACACTCTAAGTTCAAGTGATGAACTTACTGAAGTTGAGAGGGTTACTAAGAATGATATTGCCGGACAAGGGGAGTTGATGAACGGTTTAGGCAGTTTGACAATATCTGAAAGGGTGAAAGTTGACAGTGTGGACTCTGGTGGGGATACTTTACAAAATGTGATTGGGAGTTCACAGCCACCACCTCCTCCTGTTCCTCCCCCAAAAATTTCTTCACCAAACTCAAATTCAAGGAGAACTGTCACGGGAAGTTCAACTGCGGTCAGGATTGGACCTTCAAGAAGAGCAGTTGCCTGGCCAGTTGTTTCAACTAGGACGTCACCAACTGGGTCACGGCCTTCTTCTCCTAGGTCTCATGGTGAAGGCGAGGGGTACAATAGTGCTGATGAGCAAGGCCCTTGTTTTGTGTCCTCCTATGACGATATGGAAAGGGAACGGCAGTTTGAAATTGATATTAGACGTGCAAAAGGGTTTGAAGTGAAAAGAATGCTGGAGGATGGCAATTGTCTGTTTCGTGCTGTTGCAGACCAGGTTTATGGGGATTCTGAAGTGTACGACTTGACTAGACAAATGTGCATAGATTATATGGAGCGCGAGAGGGATCATTTTTCTCAATTTATTACAGAAGGATTTACTTCTTATTGCAAGAGGAAAAGAAGAGACAAGGTCTACGGAAATAATGTGGAGATCCAGGCCTTATCTGAAATGTATAATCGGCCCATCCATATTTATTCCTATAGCATTGAACCTATCAATATCTTCCATGGAAGTTATAATACCGACACACCACCTGTACGGTTAAGTTACCACCATGGAAATCATTACAACTCTCTTGTTGATCCTCGCCGCTTGACCATTGGTGCAGGACTTGGGTTCAGCAGTCTTCGCGGGGTGCGTCTATGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04622 map04622
Pfam Domains
Protein Families
OTU

Protein Analysis

390

Amino Acids

43.04

Weight (kDa)

5.31

Isoelectric Point (pI)

58.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 254 - 363 2.9e-17 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1038
AatII GACGTC 1 cut(s) 584
AccBSI CCGCTC 1 cut(s) 60
AccI GTMKAC 1 cut(s) 933
AccII CGCG 2 cut(s) 858, 1152
AciI CCGC 4 cut(s) 58, 524, 1111, 1152
AclWI GGATC 4 cut(s) 179, 873, 946, 1097
AcoI YGGCCR 1 cut(s) 560
AcsI RAATTY 2 cut(s) 471, 490
AcuI CTGAAG 3 cut(s) 174, 315, 831
AcyI GRCGYC 1 cut(s) 581
AfaI GTAC 3 cut(s) 638, 818, 1059
AfiI CCNNNNNNNGG 2 cut(s) 90, 333
AgsI TTSAA 9 cut(s) 152, 279, 495, 519, 543, 573, 710, 740, 1010
AjiI CACGTC 1 cut(s) 725
AjnI CCWGG 3 cut(s) 557, 792, 954
AjuI GAANNNNNNNTTGG 6 cut(s) 46, 78, 460, 475, 492, 507
Alw26I GTCTC 2 cut(s) 621, 918
AlwI GGATC 4 cut(s) 179, 873, 946, 1097
AoxI GGCC 5 cut(s) 560, 599, 658, 957, 980
ApoI RAATTY 2 cut(s) 471, 490
AspA2I CCTAGG 1 cut(s) 611
AspLEI GCGC 1 cut(s) 858
AspS9I GGNCC 4 cut(s) 121, 536, 659, 981
AsuHPI GGTGA 4 cut(s) 391, 471, 576, 635
AvaII GGWCC 2 cut(s) 121, 536
AvrII CCTAGG 1 cut(s) 611
AxyI CCTNAGG 1 cut(s) 117
BaeI ACNNNNGTAYC 2 cut(s) 628, 661
BalI TGGCCA 1 cut(s) 562
BarI GAAGNNNNNNTAC 2 cut(s) 1024, 1056
BbsI GAAGAC 1 cut(s) 1139
BccI CCATC 3 cut(s) 238, 755, 992
BceAI ACGGC 3 cut(s) 206, 614, 716
BciT130I CCWGG 3 cut(s) 559, 794, 956
BciVI GTATCC 1 cut(s) 403
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 2 cut(s) 621, 918
BfaI CTAG 4 cut(s) 6, 576, 612, 828
BfmI CTRYAG 1 cut(s) 1000
BfuI GTATCC 1 cut(s) 403
BisI GCNGC 2 cut(s) 58, 1111
BlnI CCTAGG 1 cut(s) 611
BlsI GCNGC 2 cut(s) 59, 1112
Bme1390I CCNGG 3 cut(s) 559, 794, 956
Bme18I GGWCC 2 cut(s) 121, 536
BmgBI CACGTC 1 cut(s) 725
BmgT120I GGNCC 4 cut(s) 121, 536, 659, 981
BmiI GGNNCC 2 cut(s) 28, 159
BmrFI CCNGG 3 cut(s) 559, 794, 956
BmrI ACTGGG 1 cut(s) 600
BmuI ACTGGG 1 cut(s) 600
BpiI GAAGAC 1 cut(s) 1139
BpmI CTGGAG 1 cut(s) 776
BpuEI CTTGAG 1 cut(s) 16
BsaHI GRCGYC 1 cut(s) 581
BsaI GGTCTC 1 cut(s) 621
BsaJI CCNNGG 4 cut(s) 84, 611, 1027, 1075
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 333
Bse1I ACTGG 2 cut(s) 563, 595
Bse21I CCTNAGG 1 cut(s) 117
BseBI CCWGG 3 cut(s) 559, 794, 956
BseDI CCNNGG 4 cut(s) 84, 611, 1027, 1075
BseGI GGATG 4 cut(s) 151, 187, 766, 984
BseLI CCNNNNNNNGG 2 cut(s) 90, 333
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 2 cut(s) 563, 595
BseRI GAGGAG 3 cut(s) 105, 170, 441
BsgI GTGCAG 1 cut(s) 1146
Bsh1236I CGCG 2 cut(s) 858, 1152
BshFI GGCC 5 cut(s) 562, 601, 660, 959, 982
BsiSI CCGG 1 cut(s) 327
BslI CCNNNNNNNGG 2 cut(s) 90, 333
BsmAI GTCTC 2 cut(s) 621, 918
BsmI GAATGC 1 cut(s) 756
BsnI GGCC 5 cut(s) 562, 601, 660, 959, 982
Bso31I GGTCTC 1 cut(s) 621
Bsp143I GATC 5 cut(s) 184, 262, 865, 951, 1102
Bsp19I CCATGG 2 cut(s) 1027, 1075
BspACI CCGC 4 cut(s) 58, 524, 1111, 1152
BspANI GGCC 5 cut(s) 562, 601, 660, 959, 982
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 2 cut(s) 858, 1152
BspLI GGNNCC 2 cut(s) 28, 159
BspPI GGATC 4 cut(s) 179, 873, 946, 1097
BspQI GCTCTTC 3 cut(s) 67, 85, 541
BspTNI GGTCTC 1 cut(s) 621
BsrBI CCGCTC 1 cut(s) 60
BsrI ACTGG 2 cut(s) 563, 595
BssECI CCNNGG 4 cut(s) 84, 611, 1027, 1075
BssMI GATC 5 cut(s) 184, 262, 865, 951, 1102
BssNI GRCGYC 1 cut(s) 581
BssT1I CCWWGG 3 cut(s) 611, 1027, 1075
Bst2UI CCWGG 3 cut(s) 559, 794, 956
Bst4CI ACNGT 4 cut(s) 350, 392, 505, 1062
Bst6I CTCTTC 5 cut(s) 67, 85, 147, 541, 916
BstACI GRCGYC 1 cut(s) 581
BstDEI CTNAG 3 cut(s) 117, 272, 312
BstDSI CCRYGG 2 cut(s) 1027, 1075
BstF5I GGATG 4 cut(s) 151, 187, 766, 984
BstFNI CGCG 2 cut(s) 858, 1152
BstHHI GCGC 1 cut(s) 858
BstKTI GATC 5 cut(s) 187, 265, 868, 954, 1105
BstMAI GTCTC 2 cut(s) 621, 918
BstMBI GATC 5 cut(s) 184, 262, 865, 951, 1102
BstMWI GCNNNNNNNGC 1 cut(s) 1149
BstNI CCWGG 3 cut(s) 559, 794, 956
BstSCI CCNGG 3 cut(s) 557, 792, 954
BstSFI CTRYAG 1 cut(s) 1000
BstUI CGCG 2 cut(s) 858, 1152
BstV2I GAAGAC 1 cut(s) 1139
BstX2I RGATCY 1 cut(s) 951
BstXI CCANNNNNNTGG 1 cut(s) 800
BstYI RGATCY 1 cut(s) 951
Bsu36I CCTNAGG 1 cut(s) 117
BsuI GTATCC 1 cut(s) 403
BsuRI GGCC 5 cut(s) 562, 601, 660, 959, 982
BtgI CCRYGG 2 cut(s) 1027, 1075
BtrI CACGTC 1 cut(s) 725
BtsCI GGATG 4 cut(s) 151, 187, 766, 984
BtsIMutI CAGTG 1 cut(s) 397
CfoI GCGC 1 cut(s) 858
Cfr13I GGNCC 4 cut(s) 121, 536, 659, 981
CseI GACGC 1 cut(s) 1148
CsiI ACCWGGT 1 cut(s) 792
Csp6I GTAC 3 cut(s) 637, 817, 1058
CviAII CATG 3 cut(s) 620, 1028, 1076
CviQI GTAC 3 cut(s) 637, 817, 1058
DdeI CTNAG 3 cut(s) 117, 272, 312
DpnI GATC 5 cut(s) 186, 264, 867, 953, 1104
DpnII GATC 5 cut(s) 184, 262, 865, 951, 1102
EaeI YGGCCR 1 cut(s) 560
Eam1104I CTCTTC 5 cut(s) 67, 85, 147, 541, 916
EarI CTCTTC 5 cut(s) 67, 85, 147, 541, 916
Eco130I CCWWGG 3 cut(s) 611, 1027, 1075
Eco147I AGGCCT 1 cut(s) 959
Eco31I GGTCTC 1 cut(s) 621
Eco47I GGWCC 2 cut(s) 121, 536
Eco57I CTGAAG 3 cut(s) 174, 315, 831
Eco81I CCTNAGG 1 cut(s) 117
EcoO109I RGGNCCY 2 cut(s) 121, 659
EcoRII CCWGG 3 cut(s) 557, 792, 954
EcoT14I CCWWGG 3 cut(s) 611, 1027, 1075
ErhI CCWWGG 3 cut(s) 611, 1027, 1075
FaeI CATG 3 cut(s) 623, 1031, 1079
FalI AAGNNNNNCTT 4 cut(s) 25, 57, 46, 78
FatI CATG 3 cut(s) 619, 1027, 1075
FauI CCCGC 1 cut(s) 1145
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 1 cut(s) 933
Fnu4HI GCNGC 2 cut(s) 58, 1111
FokI GGATG 4 cut(s) 158, 194, 773, 971
Fsp4HI GCNGC 2 cut(s) 58, 1111
FspBI CTAG 4 cut(s) 6, 576, 612, 828
GlaI GCGC 1 cut(s) 857
GluI GCNGC 2 cut(s) 58, 1111
GsuI CTGGAG 1 cut(s) 776
HaeIII GGCC 5 cut(s) 562, 601, 660, 959, 982
HapII CCGG 1 cut(s) 327
HgaI GACGC 1 cut(s) 1148
HhaI GCGC 1 cut(s) 858
Hin1I GRCGYC 1 cut(s) 581
Hin1II CATG 3 cut(s) 623, 1031, 1079
Hin6I GCGC 1 cut(s) 856
HinP1I GCGC 1 cut(s) 856
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 3 cut(s) 10, 398, 806
HpaII CCGG 1 cut(s) 327
HphI GGTGA 4 cut(s) 391, 471, 576, 635
Hpy166II GTNNAC 5 cut(s) 388, 397, 437, 817, 934
Hpy188I TCNGA 4 cut(s) 193, 373, 811, 967
Hpy188III TCNNGA 2 cut(s) 529, 543
Hpy8I GTNNAC 5 cut(s) 388, 397, 437, 817, 934
HpyAV CCTTC 5 cut(s) 198, 549, 612, 620, 884
HpyCH4III ACNGT 4 cut(s) 350, 392, 505, 1062
HpyCH4IV ACGT 2 cut(s) 581, 724
HpyCH4V TGCA 5 cut(s) 728, 788, 840, 909, 1127
HpyF10VI GCNNNNNNNGC 1 cut(s) 1149
HpyF3I CTNAG 3 cut(s) 117, 272, 312
HpySE526I ACGT 2 cut(s) 581, 724
Hsp92I GRCGYC 1 cut(s) 581
Hsp92II CATG 3 cut(s) 623, 1031, 1079
HspAI GCGC 1 cut(s) 856
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 5 cut(s) 184, 262, 865, 951, 1102
LguI GCTCTTC 3 cut(s) 67, 85, 541
LmnI GCTCC 2 cut(s) 157, 853
MabI ACCWGGT 1 cut(s) 792
MaeI CTAG 4 cut(s) 6, 576, 612, 828
MaeII ACGT 2 cut(s) 581, 724
MaeIII GTNAC 7 cut(s) 93, 209, 307, 505, 582, 594, 1067
MalI GATC 5 cut(s) 186, 264, 867, 953, 1104
MbiI CCGCTC 1 cut(s) 60
MboI GATC 5 cut(s) 184, 262, 865, 951, 1102
MfeI CAATTG 1 cut(s) 766
MflI RGATCY 1 cut(s) 951
MlsI TGGCCA 1 cut(s) 562
MluCI AATT 6 cut(s) 196, 471, 490, 711, 766, 878
MluNI TGGCCA 1 cut(s) 562
MlyI GAGTC 1 cut(s) 392
MmeI TCCRAC 1 cut(s) 72
Mox20I TGGCCA 1 cut(s) 562
MscI TGGCCA 1 cut(s) 562
MseI TTAA 3 cut(s) 108, 1064, 1171
Msp20I TGGCCA 1 cut(s) 562
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 3 cut(s) 559, 794, 956
MunI CAATTG 1 cut(s) 766
Mva1269I GAATGC 1 cut(s) 756
MvaI CCWGG 3 cut(s) 559, 794, 956
MvnI CGCG 2 cut(s) 858, 1152
MwoI GCNNNNNNNGC 1 cut(s) 1149
NcoI CCATGG 2 cut(s) 1027, 1075
NdeII GATC 5 cut(s) 184, 262, 865, 951, 1102
NlaIII CATG 3 cut(s) 623, 1031, 1079
NlaIV GGNNCC 2 cut(s) 28, 159
NmeAIII GCCGAG 2 cut(s) 65, 107
NmuCI GTSAC 5 cut(s) 93, 209, 505, 582, 594
PceI AGGCCT 1 cut(s) 959
PciSI GCTCTTC 3 cut(s) 67, 85, 541
PcsI WCGNNNNNNNCGW 1 cut(s) 1156
PctI GAATGC 1 cut(s) 756
PfeI GAWTC 2 cut(s) 10, 806
PflFI GACNNNGTC 1 cut(s) 929
PkrI GCNGC 2 cut(s) 59, 1112
PleI GAGTC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 392
PpuMI RGGWCCY 1 cut(s) 121
PsiI TTATAA 1 cut(s) 1038
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 3 cut(s) 557, 792, 954
PspGI CCWGG 3 cut(s) 557, 792, 954
PspN4I GGNNCC 2 cut(s) 28, 159
PspPI GGNCC 4 cut(s) 121, 536, 659, 981
PspPPI RGGWCCY 1 cut(s) 121
PsuI RGATCY 1 cut(s) 951
PsyI GACNNNGTC 1 cut(s) 929
RsaI GTAC 3 cut(s) 638, 818, 1059
RsaNI GTAC 3 cut(s) 637, 817, 1058
SapI GCTCTTC 3 cut(s) 67, 85, 541
SaqAI TTAA 3 cut(s) 108, 1064, 1171
SatI GCNGC 2 cut(s) 58, 1111
Sau3AI GATC 5 cut(s) 184, 262, 865, 951, 1102
Sau96I GGNCC 4 cut(s) 121, 536, 659, 981
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 3 cut(s) 559, 794, 956
SexAI ACCWGGT 1 cut(s) 792
SfcI CTRYAG 1 cut(s) 1000
SinI GGWCC 2 cut(s) 121, 536
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
Sse9I AATT 6 cut(s) 196, 471, 490, 711, 766, 878
SseBI AGGCCT 1 cut(s) 959
SsiI CCGC 4 cut(s) 58, 524, 1111, 1152
SspMI CTAG 4 cut(s) 6, 576, 612, 828
StuI AGGCCT 1 cut(s) 959
StyD4I CCNGG 3 cut(s) 557, 792, 954
StyI CCWWGG 3 cut(s) 611, 1027, 1075
TaaI ACNGT 4 cut(s) 350, 392, 505, 1062
TaiI ACGT 2 cut(s) 584, 727
TasI AATT 6 cut(s) 196, 471, 490, 711, 766, 878
TauI GCSGC 2 cut(s) 60, 1113
TfiI GAWTC 2 cut(s) 10, 806
Tru1I TTAA 3 cut(s) 108, 1064, 1171
Tru9I TTAA 3 cut(s) 108, 1064, 1171
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 5 cut(s) 93, 209, 505, 582, 594
Tsp45I GTSAC 5 cut(s) 93, 209, 505, 582, 594
TspDTI ATGAA 2 cut(s) 300, 359
TspGWI ACGGA 1 cut(s) 951
TspRI CASTG 1 cut(s) 397
Tth111I GACNNNGTC 1 cut(s) 929
VpaK11BI GGWCC 2 cut(s) 121, 536
XapI RAATTY 2 cut(s) 471, 490
XmaJI CCTAGG 1 cut(s) 611
XmiI GTMKAC 1 cut(s) 933
XspI CTAG 4 cut(s) 6, 576, 612, 828
ZraI GACGTC 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.