Rw5G028860

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003236
Physical Location & Seq
Reverse (-)
43832989 .. 43840700
7712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G028860.1

Sequence Viewer

Length: 1455 bp
ATGACTAGGATTCTGGTTCAGCGAGGTTCCTCAAGTGGTTCTTCTTCCAACCCAAGCCGCTCTTCTTCCTTGTCTGGCTCTTCCTCGGCTTGGTCACAGCCACAGGTTAATACTCCTCAGGTCCTCTCGGCTGTGAAAGATGAGGATGTTGAAGAGGAGCCACAGGAACTTGTTATTGTGGATGATCCTTCAGAGAATTGTGGGAGTAGTGACAATAATGCCGTGAAAAATGATGATGTTTTGATGGAAAGCACTCATAATGATCACACTCTAAGTTCAAGTGATGAACTTACTGAAGTTGAGAGGGTTACTAAGAATGATATTGCCGGACAAGGGGAGTTGATGAACGGTTTAGGCAGTTTGACAATATCTGAAAGGGTGAAAGTTGACAGTGTGGACTCTGGTGGGGATACTTTACAAAATGTGATTGGGAGTTCACAGCCACCACCTCCTCCTGTTCCTCCCCCAAAAATTTCTTCACCAAACTCAAATTCAAGGAGAACTGTCACAGGAAGTTCAACTGCGGTCAGGATTGGACCTTCAAGAAGAGCAGTTGCCTGGCCAGTTGTTTCAACTAGGACGTCACCAACTGGGTCACGGCCTTCTTCTCCCAGGTCTCATGGTGAAGGCGAGGGGTACAATAGTGCCGATGAGCAAGGCCCTTGCTTTGTGTCCTCCTATGACGATATGGAAAGGGAACGGCAGTTTGAAATTGATATTAGACGGGCAAAAGGGTTTGAAGTGAAAAGAATGCTGGAGGATGGCAATTGTCTGTTTCGTGCTGTTGCAGACCAGGTTTATGGGGATTCTGAAGTGTTCGACTTGACTAGACAAATGTGCATAGATTATATGGAGCGCGAGAGGGATCATTTTTCTCAATTTATTACAGAAGGATTTACTTCTTATTGCAAGAGGAAAAGAAGAGACAAGGTCTACGGAAATAATGTGGAGATCCAGGCCTTATCTGAAATGTATAATCGGCCCATCCATATTTATTCCTATAGCATTGAACCTATCAATATCTTCCATGGAAGTTATAATACCGACACACCACCTGTACGGTTAAGTTACCACCATGGAAATCATTACAACTCTCTTGTTGATCCTCGCCGCTTGACCATTGGTGCAGGACTTGGGTTCAGCAGTCTTCGCGGGACAAATGCTGACAAGGATCAGGTCAAGGCTGCCATTAAGGCTCAACAAGACCAACAAATCGATAATGCACTTTTAGCTGAGGGGCGATTTTACTCGGATCTTGAGCTTACTGAGAAAGAAATTGAACGCATGGTGATGGAAGCTTCTAGGGCTGAGTATCTTGCAGATGGCACATTCAAGAAACAACTTGGCCGCAGAGAATCTTCTACTTCAAGCTGTGAGCCTTCATCTTCTGGAGCTAGTGAGTTGACCCTTATCTCCTTTCTGTTTCCCTTTTTTTTCATTGTAGTTGGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04622 map04622
Pfam Domains
Protein Families
OTU

Protein Analysis

484

Amino Acids

53.43

Weight (kDa)

5.07

Isoelectric Point (pI)

57.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 254 - 363 6.1e-17 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1038
AatII GACGTC 1 cut(s) 584
AccBSI CCGCTC 1 cut(s) 60
AccI GTMKAC 1 cut(s) 933
AccII CGCG 2 cut(s) 858, 1152
AciI CCGC 5 cut(s) 58, 524, 1111, 1152, 1348
AclWI GGATC 6 cut(s) 179, 873, 946, 1097, 1179, 1260
AcoI YGGCCR 2 cut(s) 560, 1345
AcsI RAATTY 3 cut(s) 471, 490, 1449
AcuI CTGAAG 3 cut(s) 174, 315, 831
AcyI GRCGYC 1 cut(s) 581
AfaI GTAC 2 cut(s) 638, 1059
AfiI CCNNNNNNNGG 2 cut(s) 90, 333
AjnI CCWGG 4 cut(s) 557, 611, 792, 954
AjuI GAANNNNNNNTTGG 6 cut(s) 46, 78, 460, 475, 492, 507
AluBI AGCT 5 cut(s) 1232, 1261, 1298, 1371, 1394
AluI AGCT 5 cut(s) 1232, 1261, 1298, 1371, 1394
Alw26I GTCTC 2 cut(s) 621, 918
AlwI GGATC 6 cut(s) 179, 873, 946, 1097, 1179, 1260
AoxI GGCC 6 cut(s) 560, 599, 658, 957, 980, 1345
ApeKI GCWGC 1 cut(s) 1184
ApoI RAATTY 3 cut(s) 471, 490, 1449
AspLEI GCGC 1 cut(s) 858
AspS9I GGNCC 4 cut(s) 121, 536, 659, 981
AsuHPI GGTGA 5 cut(s) 391, 471, 576, 635, 1300
AvaII GGWCC 2 cut(s) 121, 536
AxyI CCTNAGG 1 cut(s) 117
BaeI ACNNNNGTAYC 2 cut(s) 628, 661
BalI TGGCCA 1 cut(s) 562
BarI GAAGNNNNNNTAC 2 cut(s) 1024, 1056
BbsI GAAGAC 1 cut(s) 1139
BbvCI CCTCAGC 1 cut(s) 1233
BbvI GCAGC 1 cut(s) 1171
BccI CCATC 5 cut(s) 238, 755, 992, 1285, 1316
BceAI ACGGC 3 cut(s) 206, 614, 716
BciT130I CCWGG 4 cut(s) 559, 613, 794, 956
BciVI GTATCC 1 cut(s) 403
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 2 cut(s) 621, 918
BfaI CTAG 5 cut(s) 6, 576, 828, 1302, 1395
BfmI CTRYAG 1 cut(s) 1000
BfuI GTATCC 1 cut(s) 403
BglI GCCNNNNNGGC 1 cut(s) 1193
BisI GCNGC 4 cut(s) 58, 1111, 1185, 1348
BlsI GCNGC 4 cut(s) 59, 1112, 1186, 1349
Bme1390I CCNGG 4 cut(s) 559, 613, 794, 956
Bme18I GGWCC 2 cut(s) 121, 536
BmgT120I GGNCC 4 cut(s) 121, 536, 659, 981
BmiI GGNNCC 2 cut(s) 28, 159
BmrFI CCNGG 4 cut(s) 559, 613, 794, 956
BmrI ACTGGG 1 cut(s) 600
BmuI ACTGGG 1 cut(s) 600
BpiI GAAGAC 1 cut(s) 1139
BpmI CTGGAG 2 cut(s) 776, 1410
Bpu10I CCTNAGC 1 cut(s) 1233
BpuEI CTTGAG 2 cut(s) 16, 1277
Bsa29I ATCGAT 1 cut(s) 1215
BsaHI GRCGYC 1 cut(s) 581
BsaI GGTCTC 1 cut(s) 621
BsaJI CCNNGG 4 cut(s) 84, 611, 1027, 1075
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 333
Bse1I ACTGG 2 cut(s) 563, 595
Bse21I CCTNAGG 1 cut(s) 117
BseBI CCWGG 4 cut(s) 559, 613, 794, 956
BseCI ATCGAT 1 cut(s) 1215
BseDI CCNNGG 4 cut(s) 84, 611, 1027, 1075
BseGI GGATG 4 cut(s) 151, 187, 766, 984
BseLI CCNNNNNNNGG 2 cut(s) 90, 333
BseMII CTCAG 4 cut(s) 131, 1224, 1257, 1299
BseNI ACTGG 2 cut(s) 563, 595
BseRI GAGGAG 3 cut(s) 105, 170, 441
BseXI GCAGC 1 cut(s) 1171
BsgI GTGCAG 1 cut(s) 1146
Bsh1236I CGCG 2 cut(s) 858, 1152
BshFI GGCC 6 cut(s) 562, 601, 660, 959, 982, 1347
BshVI ATCGAT 1 cut(s) 1215
BsiSI CCGG 1 cut(s) 327
BslFI GGGAC 1 cut(s) 1168
BslI CCNNNNNNNGG 2 cut(s) 90, 333
BsmAI GTCTC 2 cut(s) 621, 918
BsmFI GGGAC 1 cut(s) 1168
BsmI GAATGC 1 cut(s) 756
BsnI GGCC 6 cut(s) 562, 601, 660, 959, 982, 1347
Bso31I GGTCTC 1 cut(s) 621
Bsp143I GATC 7 cut(s) 184, 262, 865, 951, 1102, 1171, 1252
Bsp19I CCATGG 2 cut(s) 1027, 1075
BspACI CCGC 5 cut(s) 58, 524, 1111, 1152, 1348
BspANI GGCC 6 cut(s) 562, 601, 660, 959, 982, 1347
BspCNI CTCAG 4 cut(s) 130, 1225, 1258, 1300
BspDI ATCGAT 1 cut(s) 1215
BspFNI CGCG 2 cut(s) 858, 1152
BspLI GGNNCC 2 cut(s) 28, 159
BspPI GGATC 6 cut(s) 179, 873, 946, 1097, 1179, 1260
BspQI GCTCTTC 3 cut(s) 67, 85, 541
BspTNI GGTCTC 1 cut(s) 621
BsrBI CCGCTC 1 cut(s) 60
BsrI ACTGG 2 cut(s) 563, 595
BssECI CCNNGG 4 cut(s) 84, 611, 1027, 1075
BssMI GATC 7 cut(s) 184, 262, 865, 951, 1102, 1171, 1252
BssNI GRCGYC 1 cut(s) 581
BssT1I CCWWGG 2 cut(s) 1027, 1075
Bst2UI CCWGG 4 cut(s) 559, 613, 794, 956
Bst4CI ACNGT 4 cut(s) 350, 392, 505, 1062
Bst6I CTCTTC 5 cut(s) 67, 85, 147, 541, 916
BstACI GRCGYC 1 cut(s) 581
BstDEI CTNAG 6 cut(s) 117, 272, 312, 1233, 1266, 1308
BstDSI CCRYGG 2 cut(s) 1027, 1075
BstF5I GGATG 4 cut(s) 151, 187, 766, 984
BstFNI CGCG 2 cut(s) 858, 1152
BstHHI GCGC 1 cut(s) 858
BstKTI GATC 7 cut(s) 187, 265, 868, 954, 1105, 1174, 1255
BstMAI GTCTC 2 cut(s) 621, 918
BstMBI GATC 7 cut(s) 184, 262, 865, 951, 1102, 1171, 1252
BstMWI GCNNNNNNNGC 4 cut(s) 1149, 1193, 1229, 1304
BstNI CCWGG 4 cut(s) 559, 613, 794, 956
BstSCI CCNGG 4 cut(s) 557, 611, 792, 954
BstSFI CTRYAG 1 cut(s) 1000
BstUI CGCG 2 cut(s) 858, 1152
BstV1I GCAGC 1 cut(s) 1171
BstV2I GAAGAC 1 cut(s) 1139
BstX2I RGATCY 2 cut(s) 951, 1252
BstXI CCANNNNNNTGG 1 cut(s) 800
BstYI RGATCY 2 cut(s) 951, 1252
Bsu15I ATCGAT 1 cut(s) 1215
Bsu36I CCTNAGG 1 cut(s) 117
BsuI GTATCC 1 cut(s) 403
BsuRI GGCC 6 cut(s) 562, 601, 660, 959, 982, 1347
BsuTUI ATCGAT 1 cut(s) 1215
BtgI CCRYGG 2 cut(s) 1027, 1075
BtsCI GGATG 4 cut(s) 151, 187, 766, 984
BtsIMutI CAGTG 1 cut(s) 397
CfoI GCGC 1 cut(s) 858
Cfr13I GGNCC 4 cut(s) 121, 536, 659, 981
ClaI ATCGAT 1 cut(s) 1215
CsiI ACCWGGT 1 cut(s) 792
Csp6I GTAC 2 cut(s) 637, 1058
CviAII CATG 4 cut(s) 620, 1028, 1076, 1285
CviQI GTAC 2 cut(s) 637, 1058
DdeI CTNAG 6 cut(s) 117, 272, 312, 1233, 1266, 1308
DpnI GATC 7 cut(s) 186, 264, 867, 953, 1104, 1173, 1254
DpnII GATC 7 cut(s) 184, 262, 865, 951, 1102, 1171, 1252
EaeI YGGCCR 2 cut(s) 560, 1345
Eam1104I CTCTTC 5 cut(s) 67, 85, 147, 541, 916
EarI CTCTTC 5 cut(s) 67, 85, 147, 541, 916
Eco130I CCWWGG 2 cut(s) 1027, 1075
Eco147I AGGCCT 1 cut(s) 959
Eco31I GGTCTC 1 cut(s) 621
Eco47I GGWCC 2 cut(s) 121, 536
Eco57I CTGAAG 3 cut(s) 174, 315, 831
Eco81I CCTNAGG 1 cut(s) 117
EcoO109I RGGNCCY 2 cut(s) 121, 659
EcoRII CCWGG 4 cut(s) 557, 611, 792, 954
EcoT14I CCWWGG 2 cut(s) 1027, 1075
ErhI CCWWGG 2 cut(s) 1027, 1075
FaeI CATG 4 cut(s) 623, 1031, 1079, 1288
FalI AAGNNNNNCTT 4 cut(s) 25, 57, 46, 78
FaqI GGGAC 1 cut(s) 1168
FatI CATG 4 cut(s) 619, 1027, 1075, 1284
FauI CCCGC 1 cut(s) 1145
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 1 cut(s) 933
Fnu4HI GCNGC 4 cut(s) 58, 1111, 1185, 1348
FokI GGATG 4 cut(s) 158, 194, 773, 971
Fsp4HI GCNGC 4 cut(s) 58, 1111, 1185, 1348
FspBI CTAG 5 cut(s) 6, 576, 828, 1302, 1395
GlaI GCGC 1 cut(s) 857
GluI GCNGC 4 cut(s) 58, 1111, 1185, 1348
GsuI CTGGAG 2 cut(s) 776, 1410
HaeIII GGCC 6 cut(s) 562, 601, 660, 959, 982, 1347
HapII CCGG 1 cut(s) 327
HhaI GCGC 1 cut(s) 858
Hin1I GRCGYC 1 cut(s) 581
Hin1II CATG 4 cut(s) 623, 1031, 1079, 1288
Hin6I GCGC 1 cut(s) 856
HinP1I GCGC 1 cut(s) 856
HincII GTYRAC 2 cut(s) 388, 1404
HindII GTYRAC 2 cut(s) 388, 1404
HindIII AAGCTT 1 cut(s) 1296
HinfI GANTC 4 cut(s) 10, 398, 806, 1355
HpaII CCGG 1 cut(s) 327
HphI GGTGA 5 cut(s) 391, 471, 576, 635, 1300
Hpy166II GTNNAC 5 cut(s) 388, 397, 437, 934, 1404
Hpy188I TCNGA 5 cut(s) 193, 373, 811, 967, 1252
Hpy188III TCNNGA 5 cut(s) 529, 543, 1256, 1333, 1389
Hpy8I GTNNAC 5 cut(s) 388, 397, 437, 934, 1404
HpyAV CCTTC 6 cut(s) 198, 549, 612, 620, 884, 1389
HpyCH4III ACNGT 4 cut(s) 350, 392, 505, 1062
HpyCH4IV ACGT 1 cut(s) 581
HpyCH4V TGCA 6 cut(s) 788, 840, 909, 1127, 1223, 1319
HpyF10VI GCNNNNNNNGC 4 cut(s) 1149, 1193, 1229, 1304
HpyF3I CTNAG 6 cut(s) 117, 272, 312, 1233, 1266, 1308
HpySE526I ACGT 1 cut(s) 581
Hsp92I GRCGYC 1 cut(s) 581
Hsp92II CATG 4 cut(s) 623, 1031, 1079, 1288
HspAI GCGC 1 cut(s) 856
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 7 cut(s) 184, 262, 865, 951, 1102, 1171, 1252
LguI GCTCTTC 3 cut(s) 67, 85, 541
LmnI GCTCC 3 cut(s) 157, 853, 1391
Lsp1109I GCAGC 1 cut(s) 1171
MabI ACCWGGT 1 cut(s) 792
MaeI CTAG 5 cut(s) 6, 576, 828, 1302, 1395
MaeII ACGT 1 cut(s) 581
MaeIII GTNAC 7 cut(s) 93, 209, 307, 505, 582, 594, 1067
MalI GATC 7 cut(s) 186, 264, 867, 953, 1104, 1173, 1254
MbiI CCGCTC 1 cut(s) 60
MboI GATC 7 cut(s) 184, 262, 865, 951, 1102, 1171, 1252
MfeI CAATTG 1 cut(s) 766
MflI RGATCY 2 cut(s) 951, 1252
MlsI TGGCCA 1 cut(s) 562
MluCI AATT 8 cut(s) 196, 471, 490, 711, 766, 878, 1275, 1449
MluNI TGGCCA 1 cut(s) 562
MlyI GAGTC 1 cut(s) 392
MmeI TCCRAC 2 cut(s) 72, 1426
Mox20I TGGCCA 1 cut(s) 562
MscI TGGCCA 1 cut(s) 562
MseI TTAA 3 cut(s) 108, 1064, 1191
MslI CAYNNNNRTG 1 cut(s) 1289
Msp20I TGGCCA 1 cut(s) 562
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 4 cut(s) 559, 613, 794, 956
MunI CAATTG 1 cut(s) 766
Mva1269I GAATGC 1 cut(s) 756
MvaI CCWGG 4 cut(s) 559, 613, 794, 956
MvnI CGCG 2 cut(s) 858, 1152
MwoI GCNNNNNNNGC 4 cut(s) 1149, 1193, 1229, 1304
NcoI CCATGG 2 cut(s) 1027, 1075
NdeII GATC 7 cut(s) 184, 262, 865, 951, 1102, 1171, 1252
NlaIII CATG 4 cut(s) 623, 1031, 1079, 1288
NlaIV GGNNCC 2 cut(s) 28, 159
NmeAIII GCCGAG 2 cut(s) 65, 107
NmuCI GTSAC 5 cut(s) 93, 209, 505, 582, 594
PceI AGGCCT 1 cut(s) 959
PciSI GCTCTTC 3 cut(s) 67, 85, 541
PctI GAATGC 1 cut(s) 756
PfeI GAWTC 3 cut(s) 10, 806, 1355
PflFI GACNNNGTC 1 cut(s) 929
PkrI GCNGC 4 cut(s) 59, 1112, 1186, 1349
PleI GAGTC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 392
PpuMI RGGWCCY 1 cut(s) 121
PsiI TTATAA 1 cut(s) 1038
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 4 cut(s) 557, 611, 792, 954
PspGI CCWGG 4 cut(s) 557, 611, 792, 954
PspN4I GGNNCC 2 cut(s) 28, 159
PspPI GGNCC 4 cut(s) 121, 536, 659, 981
PspPPI RGGWCCY 1 cut(s) 121
PsuI RGATCY 2 cut(s) 951, 1252
PsyI GACNNNGTC 1 cut(s) 929
RsaI GTAC 2 cut(s) 638, 1059
RsaNI GTAC 2 cut(s) 637, 1058
RseI CAYNNNNRTG 1 cut(s) 1289
SapI GCTCTTC 3 cut(s) 67, 85, 541
SaqAI TTAA 3 cut(s) 108, 1064, 1191
SatI GCNGC 4 cut(s) 58, 1111, 1185, 1348
Sau3AI GATC 7 cut(s) 184, 262, 865, 951, 1102, 1171, 1252
Sau96I GGNCC 4 cut(s) 121, 536, 659, 981
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 4 cut(s) 559, 613, 794, 956
SexAI ACCWGGT 1 cut(s) 792
SfcI CTRYAG 1 cut(s) 1000
SinI GGWCC 2 cut(s) 121, 536
SmiMI CAYNNNNRTG 1 cut(s) 1289
SmlI CTYRAG 2 cut(s) 31, 1256
SmoI CTYRAG 2 cut(s) 31, 1256
Sse9I AATT 8 cut(s) 196, 471, 490, 711, 766, 878, 1275, 1449
SseBI AGGCCT 1 cut(s) 959
SsiI CCGC 5 cut(s) 58, 524, 1111, 1152, 1348
SspMI CTAG 5 cut(s) 6, 576, 828, 1302, 1395
StuI AGGCCT 1 cut(s) 959
StyD4I CCNGG 4 cut(s) 557, 611, 792, 954
StyI CCWWGG 2 cut(s) 1027, 1075
TaaI ACNGT 4 cut(s) 350, 392, 505, 1062
TaiI ACGT 1 cut(s) 584
TaqI TCGA 2 cut(s) 819, 1215
TasI AATT 8 cut(s) 196, 471, 490, 711, 766, 878, 1275, 1449
TauI GCSGC 3 cut(s) 60, 1113, 1350
TfiI GAWTC 3 cut(s) 10, 806, 1355
Tru1I TTAA 3 cut(s) 108, 1064, 1191
Tru9I TTAA 3 cut(s) 108, 1064, 1191
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 5 cut(s) 93, 209, 505, 582, 594
TseI GCWGC 1 cut(s) 1184
Tsp45I GTSAC 5 cut(s) 93, 209, 505, 582, 594
TspDTI ATGAA 4 cut(s) 300, 359, 1371, 1426
TspGWI ACGGA 1 cut(s) 951
TspRI CASTG 1 cut(s) 397
Tth111I GACNNNGTC 1 cut(s) 929
VpaK11BI GGWCC 2 cut(s) 121, 536
XapI RAATTY 3 cut(s) 471, 490, 1449
XmiI GTMKAC 1 cut(s) 933
XspI CTAG 5 cut(s) 6, 576, 828, 1302, 1395
ZraI GACGTC 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.