Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005660

Physical Location & Seq

Genomic Coordinates Forward (+)

11408561 .. 11409289

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0144700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCTTTTAGAGACCAACCTGATGAGACGCAAAGCATTTCGCTGCTGGTTTCGAAGCTGCGAGATGCGGGACATGATTCGGATGTCGATCAGGTCGAGGAGAAGTTGGTCGTGAGAAAAATGAGATTGAAGAGAGATCATGAGAAGCAGATGAAGGAGTGGGAGGAGAAGCTTCAATCTGAGAGGGTGGAGAGGTTGAAGGTGGAGGATGAGATGAGGGTTTGGAAGGAGAAGTATGAGAAGCTTCAATCTAAGAGGGTGGAGAGGCTGAATAAGGTGGAGGATGAGATGAGGGTTTGGAAGGAGAAGTATGAGAAGCTTCAATCTGAGAGGGTGGAGAGGATGAAGGTGGAGGATGAGATGAGGATTTGGAAGGAGAAGTATGAAAAGCTTCAATATGAGAGGGTGGAGAGGCTGAAGGTGGAGGATGAGATGAGGGTTTGGAAGGAGAAGTATGAGAACCTTCTGGAGAAGGCGAAGAGACGGAGGGTGGACGCTGATGAACAGTTAATTTTGAAGCTTAAGAGGAAGAACAAGATACTGCATAGGAAGAATATGAAGCTGTTGAGGGAGTTGGAGAGTGCTATGTCGAAGTTGGCGGATGAAAATCAGAAAATGATGAACATTTGGGGAGGAAGGACTGATAATGGTGAAGGTAGGATCGATAAGGGTGTTGAAGAATCTGCTCCTGTCCTAGAGTTAGAGAGAGGGTTTGATTCTGCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

DUF5110 Gal_mutarotas_2 Glyco_hydro_31

Protein Analysis

242

Amino Acids

29.58

Weight (kDa)

8.74

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23640 AT3G23640 AT3G23640
fragaria_vesca	FvH4_5g24150 FvH4_5g24150 FvH4_5g24150 FvH4_5g24150
malus_domestica	MD00G1148100.v1.1
prunus_persica	Prupe.5G018900_v2.0.a1 Prupe.5G018900_v2.0.a1 Prupe.5G018900_v2.0.a1 Prupe.5G018900_v2.0.a1
pyrus_communis	pycom16g25540
rosa_chinensis	RchiOBHm_Chr7g0213851 RchiOBHm_Chr7g0213911
rosa_laevigata	RLG00000002776
rosa_multiflora	Rmu_sc0000328.1_g000012
rosa_roxburghii	Rroxscaffold_3G00245680
rosa_rugosa	Rorug07G0144700 Rorug07G0312200
rosa_samantha	Rh7AG277000 Rh7AG277600 Rh7BG271100 Rh7CG296000 Rh7CG296700 Rh7DG283400
rosa_wichuraiana	Rw7G023910 Rw7G038710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	68, 599
AclWI	GGATC	1 cut(s)	668
AcuI	CTGAAG	1 cut(s)	437
AflII	CTTAAG	1 cut(s)	521
AgsI	TTSAA	8 cut(s)	130, 176, 199, 248, 323, 395, 517, 677
AluBI	AGCT	7 cut(s)	58, 172, 244, 319, 391, 520, 562
AluI	AGCT	7 cut(s)	58, 172, 244, 319, 391, 520, 562
Alw26I	GTCTC	3 cut(s)	6, 20, 475
AlwI	GGATC	1 cut(s)	668
ApeKI	GCWGC	2 cut(s)	43, 58
Asp700I	GAANNNNTTC	1 cut(s)	390
AsuHPI	GGTGA	1 cut(s)	662
AsuII	TTCGAA	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	30, 45
BcoDI	GTCTC	3 cut(s)	6, 20, 475
BfaI	CTAG	1 cut(s)	695
BfrI	CTTAAG	1 cut(s)	521
BisI	GCNGC	2 cut(s)	44, 59
BlsI	GCNGC	2 cut(s)	45, 60
BmsI	GCATC	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	488
Bpu14I	TTCGAA	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	663
BsaBI	GATNNNNATC	2 cut(s)	87, 606
BsaI	GGTCTC	1 cut(s)	6
Bse8I	GATNNNNATC	2 cut(s)	87, 606
BseCI	ATCGAT	1 cut(s)	663
BseGI	GGATG	7 cut(s)	88, 214, 289, 348, 361, 433, 607
BseJI	GATNNNNATC	2 cut(s)	87, 606
BseMII	CTCAG	2 cut(s)	171, 318
BseRI	GAGGAG	2 cut(s)	113, 179
BseXI	GCAGC	2 cut(s)	30, 45
BshVI	ATCGAT	1 cut(s)	663
BslFI	GGGAC	1 cut(s)	84
BsmAI	GTCTC	3 cut(s)	6, 20, 475
BsmBI	CGTCTC	2 cut(s)	20, 475
BsmFI	GGGAC	1 cut(s)	84
Bso31I	GGTCTC	1 cut(s)	6
Bsp119I	TTCGAA	1 cut(s)	53
Bsp143I	GATC	3 cut(s)	88, 136, 660
BspACI	CCGC	2 cut(s)	68, 599
BspCNI	CTCAG	2 cut(s)	172, 319
BspDI	ATCGAT	1 cut(s)	663
BspHI	TCATGA	1 cut(s)	139
BspPI	GGATC	1 cut(s)	668
BspT104I	TTCGAA	1 cut(s)	53
BspTI	CTTAAG	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	6
BssMI	GATC	3 cut(s)	88, 136, 660
Bst4CI	ACNGT	1 cut(s)	507
Bst6I	CTCTTC	2 cut(s)	125, 473
BstAFI	CTTAAG	1 cut(s)	521
BstBI	TTCGAA	1 cut(s)	53
BstDEI	CTNAG	3 cut(s)	180, 252, 327
BstF5I	GGATG	7 cut(s)	88, 214, 289, 348, 361, 433, 607
BstKTI	GATC	3 cut(s)	91, 139, 663
BstMAI	GTCTC	3 cut(s)	6, 20, 475
BstMBI	GATC	3 cut(s)	88, 136, 660
BstV1I	GCAGC	2 cut(s)	30, 45
Bsu15I	ATCGAT	1 cut(s)	663
BsuTUI	ATCGAT	1 cut(s)	663
BtsCI	GGATG	7 cut(s)	88, 214, 289, 348, 361, 433, 607
CciI	TCATGA	1 cut(s)	139
ClaI	ATCGAT	1 cut(s)	663
CseI	GACGC	2 cut(s)	37, 503
CviAII	CATG	2 cut(s)	74, 140
DdeI	CTNAG	3 cut(s)	180, 252, 327
DpnI	GATC	3 cut(s)	90, 138, 662
DpnII	GATC	3 cut(s)	88, 136, 660
Eam1104I	CTCTTC	2 cut(s)	125, 473
EarI	CTCTTC	2 cut(s)	125, 473
EciI	GGCGGA	1 cut(s)	614
Eco31I	GGTCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	437
Esp3I	CGTCTC	2 cut(s)	20, 475
FaeI	CATG	2 cut(s)	77, 143
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	2 cut(s)	73, 139
FauI	CCCGC	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	44, 59
FokI	GGATG	7 cut(s)	95, 221, 296, 355, 368, 440, 614
Fsp4HI	GCNGC	2 cut(s)	44, 59
FspBI	CTAG	1 cut(s)	695
GluI	GCNGC	2 cut(s)	44, 59
GsuI	CTGGAG	1 cut(s)	488
HgaI	GACGC	2 cut(s)	37, 503
Hin1II	CATG	2 cut(s)	77, 143
HindIII	AAGCTT	5 cut(s)	170, 242, 317, 389, 518
HinfI	GANTC	3 cut(s)	77, 680, 716
HphI	GGTGA	1 cut(s)	662
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	4 cut(s)	82, 181, 328, 612
Hpy188III	TCNNGA	3 cut(s)	112, 140, 467
Hpy8I	GTNNAC	1 cut(s)	493
HpyCH4III	ACNGT	1 cut(s)	507
HpyCH4V	TGCA	1 cut(s)	544
HpyF3I	CTNAG	3 cut(s)	180, 252, 327
Hsp92II	CATG	2 cut(s)	77, 143
Kzo9I	GATC	3 cut(s)	88, 136, 660
LmnI	GCTCC	1 cut(s)	691
LpnPI	CCDG	5 cut(s)	32, 33, 77, 452, 702
Lsp1109I	GCAGC	2 cut(s)	30, 45
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	695
MalI	GATC	3 cut(s)	90, 138, 662
MboI	GATC	3 cut(s)	88, 136, 660
MboII	GAAGA	5 cut(s)	142, 490, 541, 562, 689
MluCI	AATT	1 cut(s)	510
MmeI	TCCRAC	1 cut(s)	555
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	2 cut(s)	509, 522
MspCI	CTTAAG	1 cut(s)	521
NdeII	GATC	3 cut(s)	88, 136, 660
NlaIII	CATG	2 cut(s)	77, 143
NspV	TTCGAA	1 cut(s)	53
PagI	TCATGA	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	3 cut(s)	77, 680, 716
PkrI	GCNGC	2 cut(s)	45, 60
SaqAI	TTAA	2 cut(s)	509, 522
SatI	GCNGC	2 cut(s)	44, 59
Sau3AI	GATC	3 cut(s)	88, 136, 660
SfaNI	GCATC	1 cut(s)	55
SfuI	TTCGAA	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	1 cut(s)	510
SsiI	CCGC	2 cut(s)	68, 599
SspMI	CTAG	1 cut(s)	695
TaaI	ACNGT	1 cut(s)	507
TaqI	TCGA	5 cut(s)	53, 87, 96, 590, 663
TasI	AATT	1 cut(s)	510
TfiI	GAWTC	3 cut(s)	77, 680, 716
Tru1I	TTAA	2 cut(s)	509, 522
Tru9I	TTAA	2 cut(s)	509, 522
TseI	GCWGC	2 cut(s)	43, 58
TspDTI	ATGAA	7 cut(s)	167, 359, 399, 516, 572, 618, 635
TspGWI	ACGGA	1 cut(s)	499
Vha464I	CTTAAG	1 cut(s)	521
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.