Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005660

Physical Location & Seq

Genomic Coordinates Forward (+)

31319937 .. 31327067

Gene Structure 7131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0312200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCGATCCCAGCTGTAGTGGCTATTGTTCCGGTGGGCATATTGTTCATTCTCTCAGGCCTCATTGTTAATCTCATGCAGGCAGTTCTTTTCATCCTTATTCGTCCTATATCAAAGAAACTGTACAGAAAGATCAACAAAGTAGTTGCAGAATTGCTGTGGTTGGAACTCATATGGCTCATTGATTGGTGGGCCGGCATCAAGGTTGAGTTGTATGTAGACTCAGAAACTTTTAAATTAATGGGCAAAGAACATGCACTTCTCATTTGTAATCACAGAAGTGACATTGATTGGCTTGTTGGATGGGTCATGGCTCAGCGCTCGGGTTGCCTTGGTAGCGCACTGGCCATCATGAAGAAAGAAGCAATGTTCCTCCCAGTCATAGGTTGGTCAATGTGGTTTTGTGAATATGTTTTCTTGGAAAGAAGTTGGTCTAAAGATGAAAGCACATTGAAGTCAGGTTTTCGACGGCTAGAGGATTTCCCTATGCCATTTTGGTTGGCTCTCTTTGTAGAAGGAACACGGTTTACACAGTCAAAGCTAATGGCAGCTCAAGAGTATGCTGCTTCAAGAGGATTGCCTATTCCTAGGAATGTCTTGCTTCCACGTACGAAGGGGTTTGTTTCATCAGTAAGTCATATGCGCTCATTTGTTCCAGCAATTTATGATTGTACATTGGCTATCCCCAACAATCAGCCACCACCTACACTACTGAGAATGTTTAGAGGTCAATCTTCTGTGATAAAATTACAAATCAGGAGACATCCAATGCAAGACTTACCAGAAACAGGCGACGGAATTGGACAGTGGTGTAAAGATGTATTTGTTACAAAGGATGCCTTATTGGAGAAGTATTATACTAAAGCCACATTCAGTGAACTGCAACTTCAAAACATTGGCAGACCTATAAAGTCCTTGCTTGTTGTCATAATTTGGTCTTGCCTCCTCGGCTATGGAATTTTCAAGTTCATTCAGTGGTCTTCCCTACTATCCACATGGGAAGGCATTGCATTTTCAGTGACTTTCTTGGTCCTTGTTGTAATTCTTATGCAAATCCTCATCCAGTCATCTGACTCGGAGCGTTCTACACCTCTCAAGGTGCCCCCAAAAGACTCGGTGACGGAGCAACTCATTAAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

DUF5110 Gal_mutarotas_2 Glyco_hydro_31

Protein Analysis

380

Amino Acids

43.33

Weight (kDa)

9.29

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	83 - 214	6e-15	Acyltransferase
Acyltransf_C	PF16076	239 - 312	2.5e-23	Acyltransferase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23640 AT3G23640 AT3G23640
fragaria_vesca	FvH4_5g24150 FvH4_5g24150 FvH4_5g24150 FvH4_5g24150
malus_domestica	MD00G1148100.v1.1
prunus_persica	Prupe.5G018900_v2.0.a1 Prupe.5G018900_v2.0.a1 Prupe.5G018900_v2.0.a1 Prupe.5G018900_v2.0.a1
pyrus_communis	pycom16g25540
rosa_chinensis	RchiOBHm_Chr7g0213851 RchiOBHm_Chr7g0213911
rosa_laevigata	RLG00000002776
rosa_multiflora	Rmu_sc0000328.1_g000012
rosa_roxburghii	Rroxscaffold_3G00245680
rosa_rugosa	Rorug07G0144700 Rorug07G0312200
rosa_samantha	Rh7AG277000 Rh7AG277600 Rh7BG271100 Rh7CG296000 Rh7CG296700 Rh7DG283400
rosa_wichuraiana	Rw7G023910 Rw7G038710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1099
AccI	GTMKAC	1 cut(s)	219
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	1 cut(s)	957
AfaI	GTAC	3 cut(s)	125, 610, 673
AfeI	AGCGCT	1 cut(s)	320
AfiI	CCNNNNNNNGG	2 cut(s)	383, 788
AgsI	TTSAA	4 cut(s)	454, 570, 890, 964
AleI	CACNNNNGTG	1 cut(s)	279
AluBI	AGCT	3 cut(s)	14, 541, 551
AluI	AGCT	3 cut(s)	14, 541, 551
Alw26I	GTCTC	1 cut(s)	754
Ama87I	CYCGRG	1 cut(s)	322
Aor51HI	AGCGCT	1 cut(s)	320
AoxI	GGCC	3 cut(s)	58, 192, 345
ApeKI	GCWGC	2 cut(s)	548, 563
ApoI	RAATTY	1 cut(s)	957
AseI	ATTAAT	1 cut(s)	239
AspA2I	CCTAGG	1 cut(s)	587
AspLEI	GCGC	3 cut(s)	321, 341, 645
AspS9I	GGNCC	2 cut(s)	192, 1030
AsuHPI	GGTGA	1 cut(s)	1129
AvaI	CYCGRG	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	1030
AvrII	CCTAGG	1 cut(s)	587
BaeGI	GKGCMC	1 cut(s)	1104
BalI	TGGCCA	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	1099
BbsI	GAAGAC	1 cut(s)	972
BbvI	GCAGC	2 cut(s)	550, 560
BccI	CCATC	2 cut(s)	297, 356
BceAI	ACGGC	1 cut(s)	485
BcoDI	GTCTC	1 cut(s)	754
BfaI	CTAG	2 cut(s)	473, 588
BfmI	CTRYAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	322
BglI	GCCNNNNNGGC	1 cut(s)	948
BisI	GCNGC	2 cut(s)	549, 564
BlnI	CCTAGG	1 cut(s)	587
BlpI	GCTNAGC	1 cut(s)	315
BlsI	GCNGC	2 cut(s)	550, 565
Bme18I	GGWCC	1 cut(s)	1030
BmeT110I	CYCGRG	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	192, 1030
BmiI	GGNNCC	1 cut(s)	1101
BmrI	ACTGGG	1 cut(s)	371
BmsI	GCATC	2 cut(s)	207, 826
BmuI	ACTGGG	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	972
Bpu1102I	GCTNAGC	1 cut(s)	315
BpuEI	CTTGAG	2 cut(s)	537, 1079
BsaAI	YACGTR	1 cut(s)	608
BsaJI	CCNNGG	3 cut(s)	331, 587, 946
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 788
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	3 cut(s)	348, 377, 1063
Bse3DI	GCAATG	2 cut(s)	372, 1005
BseDI	CCNNGG	3 cut(s)	331, 587, 946
BseGI	GGATG	5 cut(s)	93, 308, 763, 841, 1059
BseLI	CCNNNNNNNGG	2 cut(s)	383, 788
BseMI	GCAATG	2 cut(s)	372, 1005
BseMII	CTCAG	4 cut(s)	69, 237, 329, 704
BseNI	ACTGG	3 cut(s)	348, 377, 1063
BseRI	GAGGAG	1 cut(s)	935
BseSI	GKGCMC	1 cut(s)	1104
BseXI	GCAGC	2 cut(s)	550, 560
BseYI	CCCAGC	1 cut(s)	10
BshFI	GGCC	3 cut(s)	60, 194, 347
BshNI	GGYRCC	1 cut(s)	1099
BsiHKCI	CYCGRG	1 cut(s)	322
BsiSI	CCGG	2 cut(s)	32, 195
BsiWI	CGTACG	1 cut(s)	608
BslI	CCNNNNNNNGG	2 cut(s)	383, 788
BsmAI	GTCTC	1 cut(s)	754
BsnI	GGCC	3 cut(s)	60, 194, 347
BsoBI	CYCGRG	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	1104
Bsp1407I	TGTACA	2 cut(s)	123, 671
Bsp143I	GATC	2 cut(s)	6, 132
Bsp1720I	GCTNAGC	1 cut(s)	315
BspANI	GGCC	3 cut(s)	60, 194, 347
BspCNI	CTCAG	4 cut(s)	68, 236, 328, 705
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	1101
BspT107I	GGYRCC	1 cut(s)	1099
BsrDI	GCAATG	2 cut(s)	372, 1005
BsrFI	RCCGGY	1 cut(s)	194
BsrGI	TGTACA	2 cut(s)	123, 671
BsrI	ACTGG	3 cut(s)	348, 377, 1063
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	3 cut(s)	331, 587, 946
BssMI	GATC	2 cut(s)	6, 132
BssT1I	CCWWGG	2 cut(s)	331, 587
Bst4CI	ACNGT	4 cut(s)	123, 525, 534, 807
BstAUI	TGTACA	2 cut(s)	123, 671
BstBAI	YACGTR	1 cut(s)	608
BstC8I	GCNNGC	2 cut(s)	81, 196
BstDEI	CTNAG	4 cut(s)	55, 223, 315, 713
BstF5I	GGATG	5 cut(s)	93, 308, 763, 841, 1059
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	3 cut(s)	321, 341, 645
BstKTI	GATC	2 cut(s)	9, 135
BstMAI	GTCTC	1 cut(s)	754
BstMBI	GATC	2 cut(s)	6, 132
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 327, 336, 948
BstNSI	RCATGY	1 cut(s)	257
BstSFI	CTRYAG	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	1104
BstV1I	GCAGC	2 cut(s)	550, 560
BstV2I	GAAGAC	1 cut(s)	972
BsuRI	GGCC	3 cut(s)	60, 194, 347
BtsCI	GGATG	5 cut(s)	93, 308, 763, 841, 1059
BtsIMutI	CAGTG	5 cut(s)	341, 812, 880, 980, 1023
Cac8I	GCNNGC	2 cut(s)	81, 196
CciI	TCATGA	1 cut(s)	351
CfoI	GCGC	3 cut(s)	321, 341, 645
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	192, 1030
Csp6I	GTAC	3 cut(s)	124, 609, 672
CviAII	CATG	5 cut(s)	76, 254, 310, 352, 996
CviQI	GTAC	3 cut(s)	124, 609, 672
DdeI	CTNAG	4 cut(s)	55, 223, 315, 713
DpnI	GATC	2 cut(s)	8, 134
DpnII	GATC	2 cut(s)	6, 132
DraI	TTTAAA	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	345
Eco130I	CCWWGG	2 cut(s)	331, 587
Eco147I	AGGCCT	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	1030
Eco47III	AGCGCT	1 cut(s)	320
Eco88I	CYCGRG	1 cut(s)	322
EcoT14I	CCWWGG	2 cut(s)	331, 587
ErhI	CCWWGG	2 cut(s)	331, 587
FaeI	CATG	5 cut(s)	79, 257, 313, 355, 999
FalI	AAGNNNNNCTT	2 cut(s)	824, 856
FatI	CATG	5 cut(s)	75, 253, 309, 351, 995
FauNDI	CATATG	2 cut(s)	173, 639
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	549, 564
FokI	GGATG	5 cut(s)	80, 315, 750, 848, 1046
Fsp4HI	GCNGC	2 cut(s)	549, 564
FspBI	CTAG	2 cut(s)	473, 588
GlaI	GCGC	3 cut(s)	320, 340, 644
GluI	GCNGC	2 cut(s)	549, 564
GsaI	CCCAGC	1 cut(s)	14
HaeII	RGCGCY	1 cut(s)	322
HaeIII	GGCC	3 cut(s)	60, 194, 347
HapII	CCGG	2 cut(s)	32, 195
HhaI	GCGC	3 cut(s)	321, 341, 645
Hin1II	CATG	5 cut(s)	79, 257, 313, 355, 999
Hin6I	GCGC	3 cut(s)	319, 339, 643
HinP1I	GCGC	3 cut(s)	319, 339, 643
HinfI	GANTC	3 cut(s)	221, 1073, 1112
HpaII	CCGG	2 cut(s)	32, 195
HphI	GGTGA	1 cut(s)	1129
Hpy166II	GTNNAC	3 cut(s)	220, 528, 878
Hpy188I	TCNGA	3 cut(s)	226, 1072, 1078
Hpy188III	TCNNGA	4 cut(s)	352, 554, 570, 757
Hpy8I	GTNNAC	3 cut(s)	220, 528, 878
Hpy99I	CGWCG	2 cut(s)	471, 797
HpyAV	CCTTC	3 cut(s)	509, 607, 995
HpyCH4III	ACNGT	4 cut(s)	123, 525, 534, 807
HpyCH4IV	ACGT	1 cut(s)	607
HpyCH4V	TGCA	7 cut(s)	79, 149, 257, 772, 883, 1010, 1051
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 327, 336, 948
HpyF3I	CTNAG	4 cut(s)	55, 223, 315, 713
HpySE526I	ACGT	1 cut(s)	607
Hsp92II	CATG	5 cut(s)	79, 257, 313, 355, 999
HspAI	GCGC	3 cut(s)	319, 339, 643
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	6, 132
LmnI	GCTCC	2 cut(s)	1078, 1123
Lsp1109I	GCAGC	2 cut(s)	550, 560
LweI	GCATC	2 cut(s)	207, 826
MaeI	CTAG	2 cut(s)	473, 588
MaeII	ACGT	1 cut(s)	607
MaeIII	GTNAC	4 cut(s)	281, 826, 1018, 1117
MalI	GATC	2 cut(s)	8, 134
MboI	GATC	2 cut(s)	6, 132
MboII	GAAGA	3 cut(s)	367, 726, 972
MhlI	GDGCHC	1 cut(s)	1104
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	8 cut(s)	152, 236, 660, 746, 798, 930, 957, 1041
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	3 cut(s)	215, 1067, 1106
MmeI	TCCRAC	2 cut(s)	144, 280
MnlI	CCTC	9 cut(s)	71, 383, 469, 566, 719, 953, 956, 1067, 1101
Mox20I	TGGCCA	1 cut(s)	347
MroNI	GCCGGC	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	4 cut(s)	69, 234, 239, 1134
MslI	CAYNNNNRTG	1 cut(s)	279
Msp20I	TGGCCA	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	2 cut(s)	32, 195
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 327, 336, 948
NaeI	GCCGGC	1 cut(s)	196
NdeI	CATATG	2 cut(s)	173, 639
NdeII	GATC	2 cut(s)	6, 132
NgoMIV	GCCGGC	1 cut(s)	194
NlaIII	CATG	5 cut(s)	79, 257, 313, 355, 999
NlaIV	GGNNCC	1 cut(s)	1101
NmeAIII	GCCGAG	1 cut(s)	927
NmuCI	GTSAC	3 cut(s)	281, 1018, 1117
NspI	RCATGY	1 cut(s)	257
OliI	CACNNNNGTG	1 cut(s)	279
PagI	TCATGA	1 cut(s)	351
PceI	AGGCCT	1 cut(s)	60
PdiI	GCCGGC	1 cut(s)	196
Pfl23II	CGTACG	1 cut(s)	608
PkrI	GCNGC	2 cut(s)	550, 565
PleI	GAGTC	3 cut(s)	215, 1067, 1106
PpsI	GAGTC	3 cut(s)	215, 1067, 1106
Ppu21I	YACGTR	1 cut(s)	608
PshBI	ATTAAT	1 cut(s)	239
PspFI	CCCAGC	1 cut(s)	10
PspLI	CGTACG	1 cut(s)	608
PspN4I	GGNNCC	1 cut(s)	1101
PspPI	GGNCC	2 cut(s)	192, 1030
PsrI	GAACNNNNNNTAC	2 cut(s)	511, 543
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	3 cut(s)	125, 610, 673
RsaNI	GTAC	3 cut(s)	124, 609, 672
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	4 cut(s)	69, 234, 239, 1134
SatI	GCNGC	2 cut(s)	549, 564
Sau3AI	GATC	2 cut(s)	6, 132
Sau96I	GGNCC	2 cut(s)	192, 1030
SchI	GAGTC	3 cut(s)	215, 1067, 1106
SduI	GDGCHC	1 cut(s)	1104
SfaNI	GCATC	2 cut(s)	207, 826
SfcI	CTRYAG	1 cut(s)	15
SinI	GGWCC	1 cut(s)	1030
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	2 cut(s)	552, 1094
SmoI	CTYRAG	2 cut(s)	552, 1094
Sse9I	AATT	8 cut(s)	152, 236, 660, 746, 798, 930, 957, 1041
SseBI	AGGCCT	1 cut(s)	60
SspMI	CTAG	2 cut(s)	473, 588
StuI	AGGCCT	1 cut(s)	60
StyI	CCWWGG	2 cut(s)	331, 587
TaaI	ACNGT	4 cut(s)	123, 525, 534, 807
TaiI	ACGT	1 cut(s)	610
TaqI	TCGA	1 cut(s)	466
TasI	AATT	8 cut(s)	152, 236, 660, 746, 798, 930, 957, 1041
TatI	WGTACW	2 cut(s)	123, 671
Tru1I	TTAA	4 cut(s)	69, 234, 239, 1134
Tru9I	TTAA	4 cut(s)	69, 234, 239, 1134
TscAI	CASTG	5 cut(s)	348, 812, 880, 980, 1023
TseFI	GTSAC	3 cut(s)	281, 1018, 1117
TseI	GCWGC	2 cut(s)	548, 563
Tsp45I	GTSAC	3 cut(s)	281, 1018, 1117
TspDTI	ATGAA	6 cut(s)	37, 82, 368, 456, 615, 958
TspGWI	ACGGA	2 cut(s)	810, 1136
TspRI	CASTG	5 cut(s)	348, 812, 880, 980, 1023
VpaK11BI	GGWCC	1 cut(s)	1030
VspI	ATTAAT	1 cut(s)	239
XapI	RAATTY	1 cut(s)	957
XceI	RCATGY	1 cut(s)	257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	384
XmaJI	CCTAGG	1 cut(s)	587
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	2 cut(s)	473, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.