No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_rugosa | Rorug04G0089900 |
| rosa_samantha | Rh1AG149700 Rh2DG289000 Rh3DG187200 Rh3DG218600 Rh4AG030300 Rh4AG153600 Rh4CG032700 Rh4DG147000 Rh5BG168800 Rh5BG462800 Rh5CG120200 Rh5DG107200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 138 |
| AciI | CCGC | 2 cut(s) | 203, 209 |
| AfaI | GTAC | 1 cut(s) | 67 |
| AluBI | AGCT | 1 cut(s) | 276 |
| AluI | AGCT | 1 cut(s) | 276 |
| Alw26I | GTCTC | 3 cut(s) | 82, 143, 256 |
| AspS9I | GGNCC | 1 cut(s) | 131 |
| AsuHPI | GGTGA | 5 cut(s) | 128, 169, 202, 223, 265 |
| AvaII | GGWCC | 1 cut(s) | 131 |
| BcoDI | GTCTC | 3 cut(s) | 82, 143, 256 |
| BfaI | CTAG | 2 cut(s) | 135, 233 |
| BfuAI | ACCTGC | 1 cut(s) | 138 |
| BmcAI | AGTACT | 1 cut(s) | 67 |
| Bme18I | GGWCC | 1 cut(s) | 131 |
| BmgT120I | GGNCC | 1 cut(s) | 131 |
| BpmI | CTGGAG | 1 cut(s) | 142 |
| BsaI | GGTCTC | 1 cut(s) | 82 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 115, 145 |
| Bse1I | ACTGG | 1 cut(s) | 125 |
| Bse3DI | GCAATG | 1 cut(s) | 252 |
| BseGI | GGATG | 1 cut(s) | 43 |
| BseMI | GCAATG | 1 cut(s) | 252 |
| BseMII | CTCAG | 2 cut(s) | 154, 251 |
| BseNI | ACTGG | 1 cut(s) | 125 |
| BsgI | GTGCAG | 1 cut(s) | 122 |
| BsmAI | GTCTC | 3 cut(s) | 82, 143, 256 |
| Bso31I | GGTCTC | 1 cut(s) | 82 |
| Bsp143I | GATC | 1 cut(s) | 85 |
| BspACI | CCGC | 2 cut(s) | 203, 209 |
| BspCNI | CTCAG | 2 cut(s) | 153, 252 |
| BspMI | ACCTGC | 1 cut(s) | 138 |
| BspTNI | GGTCTC | 1 cut(s) | 82 |
| BsrDI | GCAATG | 1 cut(s) | 252 |
| BsrI | ACTGG | 1 cut(s) | 125 |
| BssMI | GATC | 1 cut(s) | 85 |
| Bst4CI | ACNGT | 1 cut(s) | 70 |
| Bst6I | CTCTTC | 1 cut(s) | 56 |
| BstC8I | GCNNGC | 1 cut(s) | 201 |
| BstDEI | CTNAG | 3 cut(s) | 140, 260, 272 |
| BstEII | GGTNACC | 1 cut(s) | 190 |
| BstF5I | GGATG | 1 cut(s) | 43 |
| BstKTI | GATC | 1 cut(s) | 88 |
| BstMAI | GTCTC | 3 cut(s) | 82, 143, 256 |
| BstMBI | GATC | 1 cut(s) | 85 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 242 |
| BstPI | GGTNACC | 1 cut(s) | 190 |
| BtgZI | GCGATG | 1 cut(s) | 21 |
| BtsCI | GGATG | 1 cut(s) | 43 |
| BveI | ACCTGC | 1 cut(s) | 138 |
| Cac8I | GCNNGC | 1 cut(s) | 201 |
| Cfr13I | GGNCC | 1 cut(s) | 131 |
| Csp6I | GTAC | 1 cut(s) | 66 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 156, 191 |
| CviAII | CATG | 1 cut(s) | 220 |
| CviJI | RGCY | 2 cut(s) | 259, 276 |
| CviKI_1 | RGCY | 2 cut(s) | 259, 276 |
| CviQI | GTAC | 1 cut(s) | 66 |
| DdeI | CTNAG | 3 cut(s) | 140, 260, 272 |
| DpnI | GATC | 1 cut(s) | 87 |
| DpnII | GATC | 1 cut(s) | 85 |
| Eam1104I | CTCTTC | 1 cut(s) | 56 |
| EarI | CTCTTC | 1 cut(s) | 56 |
| Eco31I | GGTCTC | 1 cut(s) | 82 |
| Eco47I | GGWCC | 1 cut(s) | 131 |
| Eco91I | GGTNACC | 1 cut(s) | 190 |
| EcoO65I | GGTNACC | 1 cut(s) | 190 |
| FaeI | CATG | 1 cut(s) | 223 |
| FaiI | YATR | 2 cut(s) | 221, 280 |
| FatI | CATG | 1 cut(s) | 219 |
| FokI | GGATG | 1 cut(s) | 50 |
| FspBI | CTAG | 2 cut(s) | 135, 233 |
| GsuI | CTGGAG | 1 cut(s) | 142 |
| Hin1II | CATG | 1 cut(s) | 223 |
| HinfI | GANTC | 1 cut(s) | 264 |
| HphI | GGTGA | 5 cut(s) | 128, 169, 202, 223, 265 |
| Hpy188I | TCNGA | 1 cut(s) | 143 |
| HpyAV | CCTTC | 1 cut(s) | 278 |
| HpyCH4III | ACNGT | 1 cut(s) | 70 |
| HpyCH4V | TGCA | 1 cut(s) | 103 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 242 |
| HpyF3I | CTNAG | 3 cut(s) | 140, 260, 272 |
| Hsp92II | CATG | 1 cut(s) | 223 |
| Kzo9I | GATC | 1 cut(s) | 85 |
| LpnPI | CCDG | 5 cut(s) | 19, 96, 106, 133, 185 |
| MaeI | CTAG | 2 cut(s) | 135, 233 |
| MaeIII | GTNAC | 4 cut(s) | 116, 163, 190, 211 |
| MalI | GATC | 1 cut(s) | 87 |
| MboI | GATC | 1 cut(s) | 85 |
| MboII | GAAGA | 1 cut(s) | 73 |
| MlyI | GAGTC | 1 cut(s) | 258 |
| MnlI | CCTC | 3 cut(s) | 137, 178, 249 |
| MslI | CAYNNNNRTG | 1 cut(s) | 224 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 242 |
| NdeII | GATC | 1 cut(s) | 85 |
| NlaIII | CATG | 1 cut(s) | 223 |
| NmuCI | GTSAC | 4 cut(s) | 116, 163, 190, 211 |
| PleI | GAGTC | 1 cut(s) | 258 |
| PpsI | GAGTC | 1 cut(s) | 258 |
| PspEI | GGTNACC | 1 cut(s) | 190 |
| PspPI | GGNCC | 1 cut(s) | 131 |
| RsaI | GTAC | 1 cut(s) | 67 |
| RsaNI | GTAC | 1 cut(s) | 66 |
| RseI | CAYNNNNRTG | 1 cut(s) | 224 |
| Sau3AI | GATC | 1 cut(s) | 85 |
| Sau96I | GGNCC | 1 cut(s) | 131 |
| ScaI | AGTACT | 1 cut(s) | 67 |
| SchI | GAGTC | 1 cut(s) | 258 |
| SetI | ASST | 3 cut(s) | 152, 189, 278 |
| SinI | GGWCC | 1 cut(s) | 131 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 224 |
| SsiI | CCGC | 2 cut(s) | 203, 209 |
| SspMI | CTAG | 2 cut(s) | 135, 233 |
| TaaI | ACNGT | 1 cut(s) | 70 |
| TatI | WGTACW | 1 cut(s) | 65 |
| TseFI | GTSAC | 4 cut(s) | 116, 163, 190, 211 |
| Tsp45I | GTSAC | 4 cut(s) | 116, 163, 190, 211 |
| TspDTI | ATGAA | 1 cut(s) | 208 |
| VpaK11BI | GGWCC | 1 cut(s) | 131 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 202 |
| XspI | CTAG | 2 cut(s) | 135, 233 |
| ZrmI | AGTACT | 1 cut(s) | 67 |