Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0017467

Physical Location & Seq

Genomic Coordinates Reverse (-)

29310520 .. 29311123

Gene Structure 604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG147000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTTCTTCCTCCAAGTCCACTCAGTGGACACCAACCACCCTGTCAGCCTTGAAGACGTTGAGTTCACCACCGCCCAATCAAACCCTAAGTTTAGCGAGCGGAGAGGAATCGCGCACCTATTTCAAACACAAGGTAACTTGTCGCTGCAGAGCCATGCCGCCGAGTCCACTCTCCTCTTCGATGCAGCGTTTGGGCATGATGATGCTGTAGACGTGGGGCTATTGGTTTTGGTGACTGGAGTGGTGATCCTAGTCTCGGAGGCAGGTTTTGTGGTGAATGAGATTACCAAAGTGGCAATAGAGGTGGCGACCAAGCAAGCAGTGGCGGTGACATTCATGGTGGCAGCGCTAGCAGATTTGGCGATGGGGGTGAGGCTGAGACTTCTTCTAGGCTCAGTGGAGCTTGGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000165 GO:0003674 GO:0003824 GO:0004842 GO:0005048 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008139 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0016310 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023014 GO:0023051 GO:0023052 GO:0023057 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032446 GO:0032991 GO:0033218 GO:0035556 GO:0036211 GO:0042277 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

BRAP2 zf-UBP

Protein Analysis

137

Amino Acids

14.6

Weight (kDa)

4.84

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017467)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug04G0089900
rosa_samantha	Rh1AG149700 Rh2DG289000 Rh3DG187200 Rh3DG218600 Rh4AG030300 Rh4AG153600 Rh4CG032700 Rh4DG147000 Rh5BG168800 Rh5BG462800 Rh5CG120200 Rh5DG107200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	254
AccB7I	CCANNNNNTGG	1 cut(s)	25
AccBSI	CCGCTC	1 cut(s)	100
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	1 cut(s)	113
AciI	CCGC	4 cut(s)	72, 100, 159, 326
AclWI	GGATC	1 cut(s)	241
AdeI	CACNNNGTG	1 cut(s)	25
AfeI	AGCGCT	1 cut(s)	348
AfiI	CCNNNNNNNGG	2 cut(s)	25, 256
AgsI	TTSAA	2 cut(s)	53, 125
AjiI	CACGTC	1 cut(s)	214
AluBI	AGCT	1 cut(s)	403
AluI	AGCT	1 cut(s)	403
Alw26I	GTCTC	2 cut(s)	259, 373
AlwI	GGATC	1 cut(s)	241
Aor51HI	AGCGCT	1 cut(s)	348
AoxI	GGCC	1 cut(s)	407
ApeKI	GCWGC	3 cut(s)	145, 185, 344
AspLEI	GCGC	2 cut(s)	115, 349
AspS9I	GGNCC	1 cut(s)	407
AsuHPI	GGTGA	6 cut(s)	58, 244, 256, 286, 340, 382
AsuNHI	GCTAGC	1 cut(s)	349
BbsI	GAAGAC	1 cut(s)	60
BbvI	GCAGC	3 cut(s)	132, 197, 356
BccI	CCATC	1 cut(s)	358
BcoDI	GTCTC	2 cut(s)	259, 373
BfaI	CTAG	3 cut(s)	251, 350, 389
BfmI	CTRYAG	2 cut(s)	146, 207
BfoI	RGCGCY	1 cut(s)	350
BfuAI	ACCTGC	1 cut(s)	254
BisI	GCNGC	4 cut(s)	146, 159, 186, 345
BlsI	GCNGC	4 cut(s)	147, 160, 187, 346
BmgBI	CACGTC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	407
BmsI	GCATC	2 cut(s)	172, 193
BmtI	GCTAGC	1 cut(s)	353
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 256
Bse1I	ACTGG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	25, 256
BseMII	CTCAG	3 cut(s)	36, 368, 408
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	3 cut(s)	132, 197, 356
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	409
BslI	CCNNNNNNNGG	2 cut(s)	25, 256
BsmAI	GTCTC	2 cut(s)	259, 373
BsnI	GGCC	1 cut(s)	409
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	4 cut(s)	72, 100, 159, 326
BspANI	GGCC	1 cut(s)	409
BspCNI	CTCAG	3 cut(s)	35, 369, 407
BspFNI	CGCG	1 cut(s)	113
BspMAI	CTGCAG	1 cut(s)	150
BspMI	ACCTGC	1 cut(s)	254
BspOI	GCTAGC	1 cut(s)	353
BspPI	GGATC	1 cut(s)	241
BsrBI	CCGCTC	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	241
BssMI	GATC	1 cut(s)	246
Bst6I	CTCTTC	1 cut(s)	182
BstC8I	GCNNGC	3 cut(s)	98, 318, 351
BstDEI	CTNAG	4 cut(s)	22, 87, 377, 394
BstFNI	CGCG	1 cut(s)	113
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	2 cut(s)	115, 349
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	2 cut(s)	259, 373
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 359
BstSFI	CTRYAG	2 cut(s)	146, 207
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	3 cut(s)	132, 197, 356
BstV2I	GAAGAC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	409
BtgZI	GCGATG	1 cut(s)	377
BtrI	CACGTC	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	3 cut(s)	30, 327, 402
BveI	ACCTGC	1 cut(s)	254
Cac8I	GCNNGC	3 cut(s)	98, 318, 351
CfoI	GCGC	2 cut(s)	115, 349
Cfr13I	GGNCC	1 cut(s)	407
CspCI	CAANNNNNGTGG	2 cut(s)	285, 320
CviAII	CATG	3 cut(s)	155, 197, 337
CviJI	RGCY	7 cut(s)	48, 153, 220, 376, 393, 403, 409
CviKI_1	RGCY	7 cut(s)	48, 153, 220, 376, 393, 403, 409
DdeI	CTNAG	4 cut(s)	22, 87, 377, 394
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
DraIII	CACNNNGTG	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco47III	AGCGCT	1 cut(s)	348
FaeI	CATG	3 cut(s)	158, 200, 340
FaiI	YATR	3 cut(s)	156, 198, 338
FatI	CATG	3 cut(s)	154, 196, 336
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	4 cut(s)	146, 159, 186, 345
Fsp4HI	GCNGC	4 cut(s)	146, 159, 186, 345
FspBI	CTAG	3 cut(s)	251, 350, 389
GlaI	GCGC	2 cut(s)	114, 348
GluI	GCNGC	4 cut(s)	146, 159, 186, 345
GsuI	CTGGAG	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	350
HaeIII	GGCC	1 cut(s)	409
HhaI	GCGC	2 cut(s)	115, 349
Hin1II	CATG	3 cut(s)	158, 200, 340
Hin6I	GCGC	2 cut(s)	113, 347
HinP1I	GCGC	2 cut(s)	113, 347
HinfI	GANTC	2 cut(s)	108, 164
HphI	GGTGA	6 cut(s)	58, 244, 256, 286, 340, 382
Hpy166II	GTNNAC	5 cut(s)	19, 28, 66, 168, 211
Hpy188I	TCNGA	1 cut(s)	259
Hpy8I	GTNNAC	5 cut(s)	19, 28, 66, 168, 211
HpyCH4IV	ACGT	2 cut(s)	57, 213
HpyCH4V	TGCA	2 cut(s)	148, 185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 359
HpyF3I	CTNAG	4 cut(s)	22, 87, 377, 394
HpySE526I	ACGT	2 cut(s)	57, 213
Hsp92II	CATG	3 cut(s)	158, 200, 340
HspAI	GCGC	2 cut(s)	113, 347
Kzo9I	GATC	1 cut(s)	246
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	3 cut(s)	54, 222, 249
Lsp1109I	GCAGC	3 cut(s)	132, 197, 356
LweI	GCATC	2 cut(s)	172, 193
MaeI	CTAG	3 cut(s)	251, 350, 389
MaeII	ACGT	2 cut(s)	57, 213
MaeIII	GTNAC	3 cut(s)	134, 232, 328
MalI	GATC	1 cut(s)	248
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	1 cut(s)	246
MboII	GAAGA	3 cut(s)	65, 169, 377
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	6 cut(s)	20, 98, 185, 253, 295, 366
MslI	CAYNNNNRTG	1 cut(s)	201
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	2 cut(s)	350, 359
NdeII	GATC	1 cut(s)	246
NheI	GCTAGC	1 cut(s)	349
NlaIII	CATG	3 cut(s)	158, 200, 340
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	2 cut(s)	232, 328
PfeI	GAWTC	1 cut(s)	108
PflMI	CCANNNNNTGG	1 cut(s)	25
PkrI	GCNGC	4 cut(s)	147, 160, 187, 346
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PspPI	GGNCC	1 cut(s)	407
PstI	CTGCAG	1 cut(s)	150
RseI	CAYNNNNRTG	1 cut(s)	201
SatI	GCNGC	4 cut(s)	146, 159, 186, 345
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	1 cut(s)	173
SetI	ASST	7 cut(s)	60, 120, 136, 216, 268, 306, 405
SfaNI	GCATC	2 cut(s)	172, 193
SfcI	CTRYAG	2 cut(s)	146, 207
SmiMI	CAYNNNNRTG	1 cut(s)	201
SsiI	CCGC	4 cut(s)	72, 100, 159, 326
SspMI	CTAG	3 cut(s)	251, 350, 389
TaiI	ACGT	2 cut(s)	60, 216
TaqI	TCGA	1 cut(s)	180
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	108
TscAI	CASTG	3 cut(s)	30, 327, 402
TseFI	GTSAC	2 cut(s)	232, 328
TseI	GCWGC	3 cut(s)	145, 185, 344
Tsp45I	GTSAC	2 cut(s)	232, 328
TspDTI	ATGAA	1 cut(s)	325
TspRI	CASTG	3 cut(s)	30, 327, 402
Van91I	CCANNNNNTGG	1 cut(s)	25
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	3 cut(s)	251, 350, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.