Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0017467

Physical Location & Seq

Genomic Coordinates Reverse (-)

38778602 .. 38779217

Gene Structure 616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG153600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTTCTTCCTCCGAGTCCACTCAGTGGACACCAACCACCTTGTCAGCCTTGAAGACGTTGAGTTCACCACCATCTACGCCACCACCACCCAATCAAACCCTAAGTTCAGTGAGCGGAGAGGAATCGCGCACCTATTTCAAACACGAGGTAACTTGTCGCTGCAGAGCCACGTCGCCGAGTCCACTATCCTCTTCGATGCAGCGTTTGGGCATGATGACGCTGTCGACGTGGGGCTATTGGTTTTGGTGACTGGAGTGGTGGTCCTAGTCTCGGAGGCAAGTTTTGTGGTGAGTGCGATGACCAAAGTGGCAATAGAGGTGGCGACCAAGCAAGCGGTGGCGGTGACATTCATGGTGGCGGCGCTAGAGGATTTGGCGATGGGGGTGAGGCTGAGACTCCTTCTAGGCTCAGTGGAGCTTGGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000165 GO:0003674 GO:0003824 GO:0004842 GO:0005048 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008139 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0016310 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023014 GO:0023051 GO:0023052 GO:0023057 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032446 GO:0032991 GO:0033218 GO:0035556 GO:0036211 GO:0042277 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

BRAP2 zf-UBP

Protein Analysis

142

Amino Acids

15.29

Weight (kDa)

5.19

Isoelectric Point (pI)

30.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017467)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug04G0089900
rosa_samantha	Rh1AG149700 Rh2DG289000 Rh3DG187200 Rh3DG218600 Rh4AG030300 Rh4AG153600 Rh4CG032700 Rh4DG147000 Rh5BG168800 Rh5BG462800 Rh5CG120200 Rh5DG107200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	25
AccBSI	CCGCTC	1 cut(s)	115
AccI	GTMKAC	1 cut(s)	225
AccII	CGCG	1 cut(s)	128
AciI	CCGC	4 cut(s)	115, 335, 341, 359
AdeI	CACNNNGTG	1 cut(s)	25
AfiI	CCNNNNNNNGG	2 cut(s)	25, 271
AgsI	TTSAA	2 cut(s)	53, 140
AjiI	CACGTC	2 cut(s)	172, 229
AluBI	AGCT	1 cut(s)	418
AluI	AGCT	1 cut(s)	418
Alw26I	GTCTC	2 cut(s)	274, 388
AoxI	GGCC	1 cut(s)	422
ApeKI	GCWGC	2 cut(s)	160, 200
AspLEI	GCGC	2 cut(s)	130, 364
AspS9I	GGNCC	2 cut(s)	262, 422
AsuHPI	GGTGA	5 cut(s)	58, 259, 301, 355, 397
AvaII	GGWCC	1 cut(s)	262
BauI	CACGAG	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	147, 212
BccI	CCATC	2 cut(s)	80, 373
BcoDI	GTCTC	2 cut(s)	274, 388
BfaI	CTAG	3 cut(s)	266, 365, 404
BfmI	CTRYAG	1 cut(s)	161
BfoI	RGCGCY	1 cut(s)	365
BisI	GCNGC	3 cut(s)	161, 201, 360
BlsI	GCNGC	3 cut(s)	162, 202, 361
Bme18I	GGWCC	1 cut(s)	262
BmgBI	CACGTC	2 cut(s)	172, 229
BmgT120I	GGNCC	2 cut(s)	262, 422
BmsI	GCATC	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	273
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 271
Bse1I	ACTGG	1 cut(s)	256
BseLI	CCNNNNNNNGG	2 cut(s)	25, 271
BseMII	CTCAG	3 cut(s)	36, 383, 423
BseNI	ACTGG	1 cut(s)	256
BseXI	GCAGC	2 cut(s)	147, 212
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	424
BslI	CCNNNNNNNGG	2 cut(s)	25, 271
BsmAI	GTCTC	2 cut(s)	274, 388
BsnI	GGCC	1 cut(s)	424
BspACI	CCGC	4 cut(s)	115, 335, 341, 359
BspANI	GGCC	1 cut(s)	424
BspCNI	CTCAG	3 cut(s)	35, 384, 422
BspFNI	CGCG	1 cut(s)	128
BspMAI	CTGCAG	1 cut(s)	165
BsrBI	CCGCTC	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	256
BssSI	CACGAG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	144
Bst6I	CTCTTC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	4 cut(s)	22, 102, 392, 409
BstFNI	CGCG	1 cut(s)	128
BstH2I	RGCGCY	1 cut(s)	365
BstHHI	GCGC	2 cut(s)	130, 364
BstMAI	GTCTC	2 cut(s)	274, 388
BstSFI	CTRYAG	1 cut(s)	161
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	147, 212
BstV2I	GAAGAC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	424
BtgZI	GCGATG	2 cut(s)	311, 392
BtrI	CACGTC	2 cut(s)	172, 229
BtsIMutI	CAGTG	3 cut(s)	30, 115, 417
Cac8I	GCNNGC	1 cut(s)	333
CfoI	GCGC	2 cut(s)	130, 364
Cfr13I	GGNCC	2 cut(s)	262, 422
CseI	GACGC	1 cut(s)	227
CspCI	CAANNNNNGTGG	4 cut(s)	267, 300, 302, 335
CviAII	CATG	2 cut(s)	212, 352
CviJI	RGCY	7 cut(s)	48, 168, 235, 391, 408, 418, 424
CviKI_1	RGCY	7 cut(s)	48, 168, 235, 391, 408, 418, 424
DdeI	CTNAG	4 cut(s)	22, 102, 392, 409
DraIII	CACNNNGTG	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	262
FaeI	CATG	2 cut(s)	215, 355
FaiI	YATR	2 cut(s)	213, 353
FatI	CATG	2 cut(s)	211, 351
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	3 cut(s)	161, 201, 360
Fsp4HI	GCNGC	3 cut(s)	161, 201, 360
FspBI	CTAG	3 cut(s)	266, 365, 404
GlaI	GCGC	2 cut(s)	129, 363
GluI	GCNGC	3 cut(s)	161, 201, 360
GsuI	CTGGAG	1 cut(s)	273
HaeII	RGCGCY	1 cut(s)	365
HaeIII	GGCC	1 cut(s)	424
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	2 cut(s)	130, 364
Hin1II	CATG	2 cut(s)	215, 355
Hin6I	GCGC	2 cut(s)	128, 362
HinP1I	GCGC	2 cut(s)	128, 362
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	4 cut(s)	15, 123, 179, 396
HphI	GGTGA	5 cut(s)	58, 259, 301, 355, 397
Hpy166II	GTNNAC	5 cut(s)	19, 28, 66, 183, 226
Hpy188I	TCNGA	2 cut(s)	14, 274
Hpy8I	GTNNAC	5 cut(s)	19, 28, 66, 183, 226
Hpy99I	CGWCG	2 cut(s)	176, 230
HpyAV	CCTTC	1 cut(s)	410
HpyCH4IV	ACGT	3 cut(s)	57, 171, 228
HpyCH4V	TGCA	2 cut(s)	163, 200
HpyF3I	CTNAG	4 cut(s)	22, 102, 392, 409
HpySE526I	ACGT	3 cut(s)	57, 171, 228
Hsp92II	CATG	2 cut(s)	215, 355
HspAI	GCGC	2 cut(s)	128, 362
LmnI	GCTCC	1 cut(s)	415
LpnPI	CCDG	1 cut(s)	237
Lsp1109I	GCAGC	2 cut(s)	147, 212
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	3 cut(s)	266, 365, 404
MaeII	ACGT	3 cut(s)	57, 171, 228
MaeIII	GTNAC	3 cut(s)	149, 247, 343
MbiI	CCGCTC	1 cut(s)	115
MboII	GAAGA	2 cut(s)	65, 184
MlyI	GAGTC	3 cut(s)	24, 188, 390
MnlI	CCTC	8 cut(s)	20, 113, 140, 200, 268, 310, 361, 381
MvnI	CGCG	1 cut(s)	128
NlaIII	CATG	2 cut(s)	215, 355
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	2 cut(s)	247, 343
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	123
PflFI	GACNNNGTC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	25
PkrI	GCNGC	3 cut(s)	162, 202, 361
PleI	GAGTC	3 cut(s)	23, 187, 390
PpsI	GAGTC	3 cut(s)	23, 187, 390
PspPI	GGNCC	2 cut(s)	262, 422
PstI	CTGCAG	1 cut(s)	165
PsyI	GACNNNGTC	1 cut(s)	221
SalI	GTCGAC	1 cut(s)	224
SatI	GCNGC	3 cut(s)	161, 201, 360
Sau96I	GGNCC	2 cut(s)	262, 422
SchI	GAGTC	3 cut(s)	24, 188, 390
SetI	ASST	8 cut(s)	42, 60, 135, 151, 174, 231, 321, 420
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	1 cut(s)	161
SinI	GGWCC	1 cut(s)	262
SsiI	CCGC	4 cut(s)	115, 335, 341, 359
SspMI	CTAG	3 cut(s)	266, 365, 404
TaiI	ACGT	3 cut(s)	60, 174, 231
TaqI	TCGA	2 cut(s)	195, 225
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	1 cut(s)	123
TscAI	CASTG	3 cut(s)	30, 115, 417
TseFI	GTSAC	2 cut(s)	247, 343
TseI	GCWGC	2 cut(s)	160, 200
Tsp45I	GTSAC	2 cut(s)	247, 343
TspDTI	ATGAA	1 cut(s)	340
TspRI	CASTG	3 cut(s)	30, 115, 417
Tth111I	GACNNNGTC	1 cut(s)	221
Van91I	CCANNNNNTGG	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	3 cut(s)	266, 365, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.