Rh4CG032700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0017467
Physical Location & Seq
Forward (+)
6513816 .. 6514142
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG032700.1

Sequence Viewer

Length: 327 bp
ATGGGCGATGTCATTGCTGGTGGTATCACTGTCGGGGATGATGATGATGGTTGGTGGCAGAAGAGTGTTTGGGTCTCCACAAATCGTTCTTTGTTTGCGTGGATTGGTTTTGGTGATTGGAGTGTTGGTTCTGGTCTCAGAGGCAGGTTTTGTAATGAGCGTGACAACCAAAGTGGCAGTAGACGTGGCGACCAAGCAGGCGGTGGTGGTGACATTCATGGTGGCGGCGCTACCAGATTTGGCGATGGGGGTGAGGCTGAGACTCGTTCTAGGCTTAGTGGAGCTTGGGCCTTGAGGGCTACGAGAGAGAGAGAGAGATTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.64

Weight (kDa)

5.76

Isoelectric Point (pI)

33.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 135
AccI GTMKAC 1 cut(s) 181
AciI CCGC 2 cut(s) 201, 225
AjiI CACGTC 1 cut(s) 185
AloI GAACNNNNNNTCC 2 cut(s) 112, 144
AluBI AGCT 1 cut(s) 284
AluI AGCT 1 cut(s) 284
Alw26I GTCTC 3 cut(s) 79, 140, 254
AoxI GGCC 1 cut(s) 288
AspLEI GCGC 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 288
AsuHPI GGTGA 3 cut(s) 125, 221, 263
BccI CCATC 2 cut(s) 41, 239
BcgI CGANNNNNNTGC 1 cut(s) 30
BcoDI GTCTC 3 cut(s) 79, 140, 254
BfaI CTAG 1 cut(s) 270
BfoI RGCGCY 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 135
BglI GCCNNNNNGGC 1 cut(s) 296
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
BmgBI CACGTC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 313
BsaI GGTCTC 2 cut(s) 79, 140
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bse3DI GCAATG 1 cut(s) 12
BseGI GGATG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 151, 249
BshFI GGCC 1 cut(s) 290
BsmAI GTCTC 3 cut(s) 79, 140, 254
BsnI GGCC 1 cut(s) 290
Bso31I GGTCTC 2 cut(s) 79, 140
BspACI CCGC 2 cut(s) 201, 225
BspANI GGCC 1 cut(s) 290
BspCNI CTCAG 2 cut(s) 150, 250
BspMI ACCTGC 1 cut(s) 135
BspTNI GGTCTC 2 cut(s) 79, 140
BsrDI GCAATG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 3 cut(s) 137, 258, 275
BstF5I GGATG 1 cut(s) 43
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 1 cut(s) 230
BstMAI GTCTC 3 cut(s) 79, 140, 254
BstMWI GCNNNNNNNGC 1 cut(s) 296
BsuRI GGCC 1 cut(s) 290
BtgZI GCGATG 2 cut(s) 21, 258
BtrI CACGTC 1 cut(s) 185
BtsCI GGATG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 27
BveI ACCTGC 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 199
CfoI GCGC 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 288
CspCI CAANNNNNGTGG 2 cut(s) 154, 189
CviAII CATG 1 cut(s) 218
CviJI RGCY 5 cut(s) 257, 274, 284, 290, 299
CviKI_1 RGCY 5 cut(s) 257, 274, 284, 290, 299
DdeI CTNAG 3 cut(s) 137, 258, 275
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco31I GGTCTC 2 cut(s) 79, 140
FaeI CATG 1 cut(s) 221
FaiI YATR 1 cut(s) 219
FatI CATG 1 cut(s) 217
FblI GTMKAC 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 226
FspBI CTAG 1 cut(s) 270
GlaI GCGC 1 cut(s) 229
GluI GCNGC 1 cut(s) 226
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 1 cut(s) 290
HhaI GCGC 1 cut(s) 230
Hin1II CATG 1 cut(s) 221
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HinfI GANTC 1 cut(s) 262
HphI GGTGA 3 cut(s) 125, 221, 263
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 140
Hpy8I GTNNAC 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 3 cut(s) 137, 258, 275
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 1 cut(s) 221
HspAI GCGC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 281
LpnPI CCDG 5 cut(s) 3, 117, 130, 183, 247
MaeI CTAG 1 cut(s) 270
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 2 cut(s) 161, 209
MboII GAAGA 1 cut(s) 73
MlyI GAGTC 1 cut(s) 256
MnlI CCTC 3 cut(s) 134, 247, 288
MseI TTAA 1 cut(s) 325
MwoI GCNNNNNNNGC 1 cut(s) 296
NlaIII CATG 1 cut(s) 221
NmuCI GTSAC 2 cut(s) 161, 209
PkrI GCNGC 1 cut(s) 227
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 288
SaqAI TTAA 1 cut(s) 325
SatI GCNGC 1 cut(s) 226
Sau96I GGNCC 1 cut(s) 288
SchI GAGTC 1 cut(s) 256
SetI ASST 3 cut(s) 149, 187, 286
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
SsiI CCGC 2 cut(s) 201, 225
SspMI CTAG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 1 cut(s) 187
TauI GCSGC 1 cut(s) 228
Tru1I TTAA 1 cut(s) 325
Tru9I TTAA 1 cut(s) 325
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 2 cut(s) 161, 209
Tsp45I GTSAC 2 cut(s) 161, 209
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 181
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.