Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0017467

Physical Location & Seq

Genomic Coordinates Reverse (-)

17731848 .. 17750077

Gene Structure 18230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG168800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGATCGGGTTACGAATGCAAACCCGAGTACGAACCACGGCGTCGAGTTCACTCTCCTCTTCGATGCAGCGTTTGGGCAGGGTGACGCTGTCGACGTGGGGCTGCAAGATTCCTTAGACTCGGGATCAGGGAGTAGTGGGAAGATCAAAGTTGGTATCAATGGTTTTGGTCGGATTGGGCGGTTGGTTCTACGGATAGCGACCGCCAGGGATGATATAGAAGTGGTGGCAGTGAATGATCCTTTAGTTGATGCTAAGTACATGGCTTACATGTTTAAGTATGACTCTACACATGGAGTGTTTGATGGATCTATTAGTGTTGTGGACGGGTCCACCTTGGAAATAAATGGGAAGCAGGTTAAAGTTGAGAGCAAAAGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004365 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0009536 GO:0009555 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0010033 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043891 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0055081 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0080022 GO:0080144 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010

Pfam Domains

Protein Families

Gp_dh_C Gp_dh_N

Protein Analysis

127

Amino Acids

13.58

Weight (kDa)

5.01

Isoelectric Point (pI)

25.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gp_dh_N	PF00044	49 - 125	2.8e-26	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017467)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug04G0089900
rosa_samantha	Rh1AG149700 Rh2DG289000 Rh3DG187200 Rh3DG218600 Rh4AG030300 Rh4AG153600 Rh4CG032700 Rh4DG147000 Rh5BG168800 Rh5BG462800 Rh5CG120200 Rh5DG107200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	346
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	2 cut(s)	181, 204
AclWI	GGATC	4 cut(s)	12, 133, 233, 316
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	3 cut(s)	31, 260, 380
AflIII	ACRYGT	1 cut(s)	270
AjiI	CACGTC	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	206
AlwI	GGATC	4 cut(s)	12, 133, 233, 316
Ama87I	CYCGRG	2 cut(s)	25, 121
ApeKI	GCWGC	2 cut(s)	68, 103
AspS9I	GGNCC	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	95
AvaI	CYCGRG	2 cut(s)	25, 121
AvaII	GGWCC	1 cut(s)	330
BbvI	GCAGC	2 cut(s)	80, 90
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	1 cut(s)	208
BfuAI	ACCTGC	1 cut(s)	346
BisI	GCNGC	2 cut(s)	69, 104
BlsI	GCNGC	2 cut(s)	70, 105
Bme1390I	CCNGG	1 cut(s)	208
Bme18I	GGWCC	1 cut(s)	330
BmeT110I	CYCGRG	2 cut(s)	25, 121
BmgBI	CACGTC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	331
BmrFI	CCNGG	1 cut(s)	208
BmsI	GCATC	2 cut(s)	55, 241
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	3 cut(s)	37, 207, 336
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	3 cut(s)	37, 207, 336
BseGI	GGATG	1 cut(s)	217
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	80, 90
Bsh1285I	CGRYCG	1 cut(s)	204
BsiEI	CGRYCG	1 cut(s)	204
BsiHKCI	CYCGRG	2 cut(s)	25, 121
BsmI	GAATGC	1 cut(s)	22
BsoBI	CYCGRG	2 cut(s)	25, 121
Bsp143I	GATC	5 cut(s)	4, 125, 144, 238, 308
BspACI	CCGC	2 cut(s)	181, 204
BspLI	GGNNCC	1 cut(s)	331
BspMI	ACCTGC	1 cut(s)	346
BspPI	GGATC	4 cut(s)	12, 133, 233, 316
BssECI	CCNNGG	3 cut(s)	37, 207, 336
BssMI	GATC	5 cut(s)	4, 125, 144, 238, 308
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	65
BstACI	GRCGYC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	115, 255
BstDSI	CCRYGG	1 cut(s)	37
BstF5I	GGATG	1 cut(s)	217
BstKTI	GATC	5 cut(s)	7, 128, 147, 241, 311
BstMBI	GATC	5 cut(s)	4, 125, 144, 238, 308
BstMCI	CGRYCG	1 cut(s)	204
BstNI	CCWGG	1 cut(s)	208
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	206
BstV1I	GCAGC	2 cut(s)	80, 90
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BtgI	CCRYGG	1 cut(s)	37
BtrI	CACGTC	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	217
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	237
BveI	ACCTGC	1 cut(s)	346
Cfr13I	GGNCC	1 cut(s)	330
CseI	GACGC	2 cut(s)	31, 95
Csp6I	GTAC	3 cut(s)	30, 259, 379
CviAII	CATG	3 cut(s)	262, 271, 293
CviJI	RGCY	2 cut(s)	103, 266
CviKI_1	RGCY	2 cut(s)	103, 266
CviQI	GTAC	3 cut(s)	30, 259, 379
DdeI	CTNAG	2 cut(s)	115, 255
DpnI	GATC	5 cut(s)	6, 127, 146, 240, 310
DpnII	GATC	5 cut(s)	4, 125, 144, 238, 308
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	330
Eco88I	CYCGRG	2 cut(s)	25, 121
EcoRII	CCWGG	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	3 cut(s)	265, 274, 296
FaiI	YATR	5 cut(s)	218, 263, 272, 282, 294
FatI	CATG	3 cut(s)	261, 270, 292
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	69, 104
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	2 cut(s)	69, 104
GluI	GCNGC	2 cut(s)	69, 104
HgaI	GACGC	2 cut(s)	31, 95
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	265, 274, 296
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	3 cut(s)	110, 119, 284
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	4 cut(s)	51, 94, 325, 333
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	1 cut(s)	123
Hpy8I	GTNNAC	4 cut(s)	51, 94, 325, 333
Hpy99I	CGWCG	2 cut(s)	47, 98
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	3 cut(s)	20, 68, 106
HpyF3I	CTNAG	2 cut(s)	115, 255
HpySE526I	ACGT	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	265, 274, 296
Kzo9I	GATC	5 cut(s)	4, 125, 144, 238, 308
LpnPI	CCDG	5 cut(s)	65, 114, 193, 220, 341
Lsp1109I	GCAGC	2 cut(s)	80, 90
LweI	GCATC	2 cut(s)	55, 241
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	2 cut(s)	10, 83
MalI	GATC	5 cut(s)	6, 127, 146, 240, 310
MboI	GATC	5 cut(s)	4, 125, 144, 238, 308
MboII	GAAGA	2 cut(s)	52, 154
MflI	RGATCY	1 cut(s)	308
MlyI	GAGTC	2 cut(s)	113, 278
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	1 cut(s)	68
MseI	TTAA	2 cut(s)	276, 360
MspR9I	CCNGG	1 cut(s)	208
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	208
NdeII	GATC	5 cut(s)	4, 125, 144, 238, 308
NlaIII	CATG	3 cut(s)	265, 274, 296
NlaIV	GGNNCC	1 cut(s)	331
NmuCI	GTSAC	1 cut(s)	83
NspI	RCATGY	1 cut(s)	274
PciI	ACATGT	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PctI	GAATGC	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	110
PflFI	GACNNNGTC	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	70, 105
PleI	GAGTC	2 cut(s)	113, 278
PpsI	GAGTC	2 cut(s)	113, 278
PscI	ACATGT	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	331
PspPI	GGNCC	1 cut(s)	330
PsuI	RGATCY	1 cut(s)	308
PsyI	GACNNNGTC	1 cut(s)	89
RsaI	GTAC	3 cut(s)	31, 260, 380
RsaNI	GTAC	3 cut(s)	30, 259, 379
SalI	GTCGAC	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	276, 360
SatI	GCNGC	2 cut(s)	69, 104
Sau3AI	GATC	5 cut(s)	4, 125, 144, 238, 308
Sau96I	GGNCC	1 cut(s)	330
SchI	GAGTC	2 cut(s)	113, 278
ScrFI	CCNGG	1 cut(s)	208
SetI	ASST	4 cut(s)	99, 338, 360, 380
SfaNI	GCATC	2 cut(s)	55, 241
SinI	GGWCC	1 cut(s)	330
SsiI	CCGC	2 cut(s)	181, 204
StyD4I	CCNGG	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	336
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	3 cut(s)	45, 63, 93
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	2 cut(s)	276, 360
Tru9I	TTAA	2 cut(s)	276, 360
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	2 cut(s)	68, 103
Tsp45I	GTSAC	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	1 cut(s)	237
Tth111I	GACNNNGTC	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	330
XceI	RCATGY	1 cut(s)	274
XmiI	GTMKAC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.