Rh5CG120200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0017467
Physical Location & Seq
Reverse (-)
9958674 .. 9959030
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG120200.1

Sequence Viewer

Length: 357 bp
ATGAGGAGGGTGCGGAAGGTGGAGGAGAGTATGGATCCAGGCCAAGTAGACCTCAGTATGGATCCCAGGAGCCCGGATCGGGTTACGGTCGTAAGCCGGAGTACCAAGCGCCTGAATCAGAGTATAGATCGGGTTACGGACGCAAACCCGAGTACGAGCCACGGCGCCGAGTCCACTCTCCTCTTCGTCGTCGCCGAGTCCACTCTCCTCTTTGATGCAGCGTTTGGGCAGGGTGACGATGTCAACGTGGGGCTGCAAGATTCCTTAGACTCAGGTTGGTTTGATCGGAGAATTGGGCTTTCAGGTTTTTTGGCTGGTGCTAGTAGTTGGCCTCCATACAATGGGCAATGTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.9

Weight (kDa)

5.0

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 164
AccB7I CCANNNNNTGG 1 cut(s) 341
AccI GTMKAC 1 cut(s) 48
AciI CCGC 1 cut(s) 13
AclWI GGATC 5 cut(s) 29, 42, 56, 69, 84
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 2 cut(s) 103, 154
AfiI CCNNNNNNNGG 3 cut(s) 58, 79, 341
AjnI CCWGG 2 cut(s) 37, 65
AlwI GGATC 5 cut(s) 29, 42, 56, 69, 84
Ama87I CYCGRG 1 cut(s) 148
AoxI GGCC 2 cut(s) 40, 329
ApeKI GCWGC 2 cut(s) 218, 253
AspLEI GCGC 2 cut(s) 111, 167
AsuC2I CCSGG 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 148
BamHI GGATCC 2 cut(s) 34, 61
BanI GGYRCC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 74
BbvI GCAGC 2 cut(s) 230, 240
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 2 cut(s) 39, 67
BcnI CCSGG 1 cut(s) 74
BfaI CTAG 1 cut(s) 321
BfoI RGCGCY 2 cut(s) 112, 168
BisI GCNGC 2 cut(s) 219, 254
BlsI GCNGC 2 cut(s) 220, 255
Bme1390I CCNGG 3 cut(s) 39, 67, 74
BmeT110I CYCGRG 1 cut(s) 148
BmiI GGNNCC 4 cut(s) 36, 63, 71, 166
BmrFI CCNGG 3 cut(s) 39, 67, 74
BmsI GCATC 1 cut(s) 205
BpuMI CCSGG 1 cut(s) 74
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 65, 160
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 79, 341
Bse3DI GCAATG 1 cut(s) 353
BseBI CCWGG 2 cut(s) 39, 67
BseDI CCNNGG 2 cut(s) 65, 160
BseLI CCNNNNNNNGG 3 cut(s) 58, 79, 341
BseMI GCAATG 1 cut(s) 353
BseMII CTCAG 2 cut(s) 67, 285
BseRI GAGGAG 4 cut(s) 19, 38, 170, 197
BseXI GCAGC 2 cut(s) 230, 240
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 2 cut(s) 42, 331
BshNI GGYRCC 1 cut(s) 164
BsiEI CGRYCG 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 148
BsiSI CCGG 2 cut(s) 74, 97
BslI CCNNNNNNNGG 3 cut(s) 58, 79, 341
BsnI GGCC 2 cut(s) 42, 331
BsoBI CYCGRG 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 5 cut(s) 34, 61, 76, 127, 283
BspACI CCGC 1 cut(s) 13
BspANI GGCC 2 cut(s) 42, 331
BspCNI CTCAG 2 cut(s) 66, 284
BspLI GGNNCC 4 cut(s) 36, 63, 71, 166
BspPI GGATC 5 cut(s) 29, 42, 56, 69, 84
BspT107I GGYRCC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 353
BssECI CCNNGG 2 cut(s) 65, 160
BssMI GATC 5 cut(s) 34, 61, 76, 127, 283
BssNI GRCGYC 1 cut(s) 165
Bst2UI CCWGG 2 cut(s) 39, 67
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 165
BstDEI CTNAG 3 cut(s) 53, 265, 271
BstDSI CCRYGG 1 cut(s) 160
BstH2I RGCGCY 2 cut(s) 112, 168
BstHHI GCGC 2 cut(s) 111, 167
BstKTI GATC 5 cut(s) 37, 64, 79, 130, 286
BstMBI GATC 5 cut(s) 34, 61, 76, 127, 283
BstMCI CGRYCG 1 cut(s) 90
BstNI CCWGG 2 cut(s) 39, 67
BstSCI CCNGG 3 cut(s) 37, 65, 72
BstV1I GCAGC 2 cut(s) 230, 240
BstX2I RGATCY 2 cut(s) 34, 61
BstYI RGATCY 2 cut(s) 34, 61
BsuRI GGCC 2 cut(s) 42, 331
BtgI CCRYGG 1 cut(s) 160
CfoI GCGC 2 cut(s) 111, 167
CseI GACGC 1 cut(s) 149
Csp6I GTAC 2 cut(s) 102, 153
CviJI RGCY 8 cut(s) 42, 72, 96, 159, 253, 298, 314, 331
CviKI_1 RGCY 8 cut(s) 42, 72, 96, 159, 253, 298, 314, 331
CviQI GTAC 2 cut(s) 102, 153
DdeI CTNAG 3 cut(s) 53, 265, 271
DinI GGCGCC 1 cut(s) 166
DpnI GATC 5 cut(s) 36, 63, 78, 129, 285
DpnII GATC 5 cut(s) 34, 61, 76, 127, 283
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 74
Eco88I CYCGRG 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 37, 65
EcoT38I GRGCYC 1 cut(s) 74
EgeI GGCGCC 1 cut(s) 166
EheI GGCGCC 1 cut(s) 166
FaiI YATR 4 cut(s) 32, 59, 125, 337
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 2 cut(s) 219, 254
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 2 cut(s) 219, 254
FspBI CTAG 1 cut(s) 321
GlaI GCGC 2 cut(s) 110, 166
GluI GCNGC 2 cut(s) 219, 254
HaeII RGCGCY 2 cut(s) 112, 168
HaeIII GGCC 2 cut(s) 42, 331
HapII CCGG 2 cut(s) 74, 97
HgaI GACGC 1 cut(s) 149
HhaI GCGC 2 cut(s) 111, 167
Hin1I GRCGYC 1 cut(s) 165
Hin6I GCGC 2 cut(s) 109, 165
HinP1I GCGC 2 cut(s) 109, 165
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 5 cut(s) 115, 170, 197, 260, 269
HpaII CCGG 2 cut(s) 74, 97
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 4 cut(s) 49, 174, 201, 244
Hpy188I TCNGA 2 cut(s) 120, 288
Hpy8I GTNNAC 4 cut(s) 49, 174, 201, 244
Hpy99I CGWCG 2 cut(s) 191, 194
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 2 cut(s) 218, 256
HpyF3I CTNAG 3 cut(s) 53, 265, 271
HpySE526I ACGT 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 165
HspAI GCGC 2 cut(s) 109, 165
KasI GGCGCC 1 cut(s) 164
Kzo9I GATC 5 cut(s) 34, 61, 76, 127, 283
LmnI GCTCC 1 cut(s) 69
Lsp1109I GCAGC 2 cut(s) 230, 240
LweI GCATC 1 cut(s) 205
MaeI CTAG 1 cut(s) 321
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 3 cut(s) 82, 133, 233
MalI GATC 5 cut(s) 36, 63, 78, 129, 285
MboI GATC 5 cut(s) 34, 61, 76, 127, 283
MboII GAAGA 1 cut(s) 175
MflI RGATCY 2 cut(s) 34, 61
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 1 cut(s) 291
Mly113I GGCGCC 1 cut(s) 165
MlyI GAGTC 3 cut(s) 179, 206, 263
MnlI CCTC 5 cut(s) 16, 62, 191, 218, 342
MspI CCGG 2 cut(s) 74, 97
MspR9I CCNGG 3 cut(s) 39, 67, 74
MvaI CCWGG 2 cut(s) 39, 67
NarI GGCGCC 1 cut(s) 165
NciI CCSGG 1 cut(s) 74
NdeII GATC 5 cut(s) 34, 61, 76, 127, 283
NlaIV GGNNCC 4 cut(s) 36, 63, 71, 166
NmeAIII GCCGAG 2 cut(s) 193, 220
NmuCI GTSAC 1 cut(s) 233
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 243
PfeI GAWTC 2 cut(s) 115, 260
PflFI GACNNNGTC 1 cut(s) 239
PflMI CCANNNNNTGG 1 cut(s) 341
PkrI GCNGC 2 cut(s) 220, 255
PleI GAGTC 3 cut(s) 178, 205, 263
PluTI GGCGCC 1 cut(s) 168
PpsI GAGTC 3 cut(s) 178, 205, 263
Psp6I CCWGG 2 cut(s) 37, 65
PspGI CCWGG 2 cut(s) 37, 65
PspN4I GGNNCC 4 cut(s) 36, 63, 71, 166
PsuI RGATCY 2 cut(s) 34, 61
PsyI GACNNNGTC 1 cut(s) 239
RsaI GTAC 2 cut(s) 103, 154
RsaNI GTAC 2 cut(s) 102, 153
SatI GCNGC 2 cut(s) 219, 254
Sau3AI GATC 5 cut(s) 34, 61, 76, 127, 283
SchI GAGTC 3 cut(s) 179, 206, 263
ScrFI CCNGG 3 cut(s) 39, 67, 74
SduI GDGCHC 1 cut(s) 74
SetI ASST 5 cut(s) 21, 54, 249, 277, 307
SfaNI GCATC 1 cut(s) 205
SfoI GGCGCC 1 cut(s) 166
Sse9I AATT 1 cut(s) 291
SsiI CCGC 1 cut(s) 13
SspDI GGCGCC 1 cut(s) 164
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 3 cut(s) 37, 65, 72
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 1 cut(s) 249
TasI AATT 1 cut(s) 291
TfiI GAWTC 2 cut(s) 115, 260
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 2 cut(s) 218, 253
Tsp45I GTSAC 1 cut(s) 233
TspGWI ACGGA 1 cut(s) 152
Tth111I GACNNNGTC 1 cut(s) 239
Van91I CCANNNNNTGG 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.