Rh5DG107200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0017467
Physical Location & Seq
Reverse (-)
9746930 .. 9747262
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG107200.1

Sequence Viewer

Length: 333 bp
ATGAGGAGGGTGCGGAAGGTGGAGGAGAGTATGGATCCAGGCCCAGTAGACCTCAGTATGGATCCCAGGAGCCCGAATCGGGTTACGGTCGTAAACCGGAGTACCAAGCGCTTGAATCGGAGTATGGATAGGGTTACGGACGCAAACCCGAGTACGAGCCATGGCGCCGACTCCACTCTCCTCTTCGATGCAGCGTTTGGGCAGGGTGACGATGTCAACGTGGGGCTGCAAGATTCCTTAGACTCGGGTTGGTTTGATCGAAGAATTGGGCTTTCAGGTTTTTTGGCTGGTGTTAGTGGTTGGCCGCCATACAATGGGCGACGTCGTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.24

Weight (kDa)

9.66

Isoelectric Point (pI)

68.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 325
AccB1I GGYRCC 1 cut(s) 164
AccB7I CCANNNNNTGG 1 cut(s) 314
AccI GTMKAC 1 cut(s) 48
AciI CCGC 2 cut(s) 13, 305
AclWI GGATC 4 cut(s) 29, 42, 56, 69
AcoI YGGCCR 1 cut(s) 302
AcyI GRCGYC 2 cut(s) 165, 322
AfaI GTAC 2 cut(s) 103, 154
AfeI AGCGCT 1 cut(s) 110
AfiI CCNNNNNNNGG 3 cut(s) 58, 79, 314
AgsI TTSAA 1 cut(s) 115
AjnI CCWGG 2 cut(s) 37, 65
AlwI GGATC 4 cut(s) 29, 42, 56, 69
Ama87I CYCGRG 2 cut(s) 148, 244
Aor51HI AGCGCT 1 cut(s) 110
AoxI GGCC 2 cut(s) 40, 302
ApeKI GCWGC 2 cut(s) 191, 226
AspLEI GCGC 2 cut(s) 111, 167
AspS9I GGNCC 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 218
AvaI CYCGRG 2 cut(s) 148, 244
BaeI ACNNNNGTAYC 2 cut(s) 85, 118
BamHI GGATCC 2 cut(s) 34, 61
BanI GGYRCC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 74
BbvI GCAGC 2 cut(s) 203, 213
BciT130I CCWGG 2 cut(s) 39, 67
BfoI RGCGCY 2 cut(s) 112, 168
BisI GCNGC 3 cut(s) 192, 227, 305
BlsI GCNGC 3 cut(s) 193, 228, 306
Bme1390I CCNGG 2 cut(s) 39, 67
BmeT110I CYCGRG 2 cut(s) 148, 244
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 4 cut(s) 36, 63, 71, 166
BmrFI CCNGG 2 cut(s) 39, 67
BmrI ACTGGG 1 cut(s) 38
BmsI GCATC 1 cut(s) 178
BmuI ACTGGG 1 cut(s) 38
BsaHI GRCGYC 2 cut(s) 165, 322
BsaJI CCNNGG 2 cut(s) 65, 160
BsaWI WCCGGW 1 cut(s) 96
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 79, 314
Bse1I ACTGG 1 cut(s) 44
BseBI CCWGG 2 cut(s) 39, 67
BseDI CCNNGG 2 cut(s) 65, 160
BseLI CCNNNNNNNGG 3 cut(s) 58, 79, 314
BseMII CTCAG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 44
BseRI GAGGAG 3 cut(s) 19, 38, 170
BseXI GCAGC 2 cut(s) 203, 213
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 2 cut(s) 42, 304
BshNI GGYRCC 1 cut(s) 164
BsiEI CGRYCG 1 cut(s) 90
BsiHKCI CYCGRG 2 cut(s) 148, 244
BsiSI CCGG 1 cut(s) 97
BslI CCNNNNNNNGG 3 cut(s) 58, 79, 314
BsnI GGCC 2 cut(s) 42, 304
BsoBI CYCGRG 2 cut(s) 148, 244
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 3 cut(s) 34, 61, 256
Bsp19I CCATGG 1 cut(s) 160
BspACI CCGC 2 cut(s) 13, 305
BspANI GGCC 2 cut(s) 42, 304
BspCNI CTCAG 1 cut(s) 66
BspLI GGNNCC 4 cut(s) 36, 63, 71, 166
BspPI GGATC 4 cut(s) 29, 42, 56, 69
BspT107I GGYRCC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 65, 160
BssMI GATC 3 cut(s) 34, 61, 256
BssNI GRCGYC 2 cut(s) 165, 322
BssT1I CCWWGG 1 cut(s) 160
Bst2UI CCWGG 2 cut(s) 39, 67
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 188
BstACI GRCGYC 2 cut(s) 165, 322
BstDEI CTNAG 2 cut(s) 53, 238
BstDSI CCRYGG 1 cut(s) 160
BstH2I RGCGCY 2 cut(s) 112, 168
BstHHI GCGC 2 cut(s) 111, 167
BstKTI GATC 3 cut(s) 37, 64, 259
BstMBI GATC 3 cut(s) 34, 61, 256
BstMCI CGRYCG 1 cut(s) 90
BstNI CCWGG 2 cut(s) 39, 67
BstSCI CCNGG 2 cut(s) 37, 65
BstV1I GCAGC 2 cut(s) 203, 213
BstX2I RGATCY 2 cut(s) 34, 61
BstYI RGATCY 2 cut(s) 34, 61
BsuRI GGCC 2 cut(s) 42, 304
BtgI CCRYGG 1 cut(s) 160
CfoI GCGC 2 cut(s) 111, 167
Cfr13I GGNCC 1 cut(s) 41
CseI GACGC 1 cut(s) 149
Csp6I GTAC 2 cut(s) 102, 153
CviAII CATG 1 cut(s) 161
CviJI RGCY 7 cut(s) 42, 72, 159, 226, 271, 287, 304
CviKI_1 RGCY 7 cut(s) 42, 72, 159, 226, 271, 287, 304
CviQI GTAC 2 cut(s) 102, 153
DdeI CTNAG 2 cut(s) 53, 238
DinI GGCGCC 1 cut(s) 166
DpnI GATC 3 cut(s) 36, 63, 258
DpnII GATC 3 cut(s) 34, 61, 256
EaeI YGGCCR 1 cut(s) 302
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 74
Eco47III AGCGCT 1 cut(s) 110
Eco88I CYCGRG 2 cut(s) 148, 244
EcoRII CCWGG 2 cut(s) 37, 65
EcoT14I CCWWGG 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 74
EgeI GGCGCC 1 cut(s) 166
EheI GGCGCC 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 1 cut(s) 164
FaiI YATR 5 cut(s) 32, 59, 125, 162, 310
FatI CATG 1 cut(s) 160
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 3 cut(s) 192, 227, 305
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 3 cut(s) 192, 227, 305
GlaI GCGC 2 cut(s) 110, 166
GluI GCNGC 3 cut(s) 192, 227, 305
HaeII RGCGCY 2 cut(s) 112, 168
HaeIII GGCC 2 cut(s) 42, 304
HapII CCGG 1 cut(s) 97
HgaI GACGC 1 cut(s) 149
HhaI GCGC 2 cut(s) 111, 167
Hin1I GRCGYC 2 cut(s) 165, 322
Hin1II CATG 1 cut(s) 164
Hin6I GCGC 2 cut(s) 109, 165
HinP1I GCGC 2 cut(s) 109, 165
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 5 cut(s) 76, 115, 170, 233, 242
HpaII CCGG 1 cut(s) 97
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 3 cut(s) 49, 94, 217
Hpy188I TCNGA 1 cut(s) 120
Hpy8I GTNNAC 3 cut(s) 49, 94, 217
Hpy99I CGWCG 2 cut(s) 324, 327
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 2 cut(s) 219, 322
HpyCH4V TGCA 2 cut(s) 191, 229
HpyF3I CTNAG 2 cut(s) 53, 238
HpySE526I ACGT 2 cut(s) 219, 322
Hsp92I GRCGYC 2 cut(s) 165, 322
Hsp92II CATG 1 cut(s) 164
HspAI GCGC 2 cut(s) 109, 165
KasI GGCGCC 1 cut(s) 164
Kzo9I GATC 3 cut(s) 34, 61, 256
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 9 cut(s) 24, 51, 52, 57, 79, 110, 188, 261, 273
Lsp1109I GCAGC 2 cut(s) 203, 213
LweI GCATC 1 cut(s) 178
MaeII ACGT 2 cut(s) 219, 322
MaeIII GTNAC 3 cut(s) 82, 133, 206
MalI GATC 3 cut(s) 36, 63, 258
MboI GATC 3 cut(s) 34, 61, 256
MboII GAAGA 2 cut(s) 175, 273
MflI RGATCY 2 cut(s) 34, 61
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 1 cut(s) 264
Mly113I GGCGCC 1 cut(s) 165
MlyI GAGTC 2 cut(s) 164, 236
MnlI CCTC 3 cut(s) 16, 62, 191
MspI CCGG 1 cut(s) 97
MspR9I CCNGG 2 cut(s) 39, 67
MvaI CCWGG 2 cut(s) 39, 67
NarI GGCGCC 1 cut(s) 165
NcoI CCATGG 1 cut(s) 160
NdeII GATC 3 cut(s) 34, 61, 256
NlaIII CATG 1 cut(s) 164
NlaIV GGNNCC 4 cut(s) 36, 63, 71, 166
NmuCI GTSAC 1 cut(s) 206
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PfeI GAWTC 3 cut(s) 76, 115, 233
PflFI GACNNNGTC 1 cut(s) 212
PflMI CCANNNNNTGG 1 cut(s) 314
PkrI GCNGC 3 cut(s) 193, 228, 306
PleI GAGTC 2 cut(s) 164, 236
PluTI GGCGCC 1 cut(s) 168
PpsI GAGTC 2 cut(s) 164, 236
Psp6I CCWGG 2 cut(s) 37, 65
PspGI CCWGG 2 cut(s) 37, 65
PspN4I GGNNCC 4 cut(s) 36, 63, 71, 166
PspPI GGNCC 1 cut(s) 41
PsuI RGATCY 2 cut(s) 34, 61
PsyI GACNNNGTC 1 cut(s) 212
RsaI GTAC 2 cut(s) 103, 154
RsaNI GTAC 2 cut(s) 102, 153
SatI GCNGC 3 cut(s) 192, 227, 305
Sau3AI GATC 3 cut(s) 34, 61, 256
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 2 cut(s) 164, 236
ScrFI CCNGG 2 cut(s) 39, 67
SduI GDGCHC 1 cut(s) 74
SetI ASST 5 cut(s) 21, 54, 222, 280, 325
SfaNI GCATC 1 cut(s) 178
SfoI GGCGCC 1 cut(s) 166
Sse9I AATT 1 cut(s) 264
SsiI CCGC 2 cut(s) 13, 305
SspDI GGCGCC 1 cut(s) 164
StyD4I CCNGG 2 cut(s) 37, 65
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 2 cut(s) 222, 325
TaqI TCGA 2 cut(s) 186, 259
TasI AATT 1 cut(s) 264
TauI GCSGC 1 cut(s) 307
TfiI GAWTC 3 cut(s) 76, 115, 233
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 2 cut(s) 191, 226
Tsp45I GTSAC 1 cut(s) 206
TspGWI ACGGA 1 cut(s) 152
Tth111I GACNNNGTC 1 cut(s) 212
Van91I CCANNNNNTGG 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 48
ZraI GACGTC 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.