Rh3DG187200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0017467
Physical Location & Seq
Forward (+)
16685943 .. 16686422
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG187200.1

Sequence Viewer

Length: 480 bp
ATGGATCCAGGCCCAGTAGACCTCATTATGGATCCTAAGAGCCCGAATCGGGTTACAGTCGTAAGCCGGAGTACCAAGCGCCTGAATCAGAGTATGAATCGGGTTACGGATGCAAACCCGAGTACGAGCCACAACGCCGACTCCACTTTCCTCTTCGTTGTCGTTGAGTCCACTCTCCTCTTCGATGCAGCGTTTGGGCAGGGTGACGATGTCGACGTGGGGCTGCAAGATTCCTTAGACTCGGGTTGGTCTGATCGAAGAATTGGGCTTTCAGGTTTTTGGCTGGTGCTAATGGTTGGCCTTCATACGATGGGCGACGTCGTTGGTGGTGGTATCACTGTTAGGGATGATGATGATGGTTGGTGGCAGAAAAGTGTTTGGATCACCCAAGATCGGATTTTGTTTGCGCAGATTGGTTTTGGTGACTGGAGTGGTGGTCCTAGTCTCGAAGGCAGGTTTTGTGGTGAGTGCAACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.36

Weight (kDa)

4.36

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 321
Acc16I TGCGCA 1 cut(s) 408
Acc36I ACCTGC 1 cut(s) 444
AccI GTMKAC 2 cut(s) 18, 213
AclWI GGATC 4 cut(s) 12, 26, 39, 389
AcyI GRCGYC 1 cut(s) 318
AfaI GTAC 2 cut(s) 73, 124
AfiI CCNNNNNNNGG 3 cut(s) 28, 49, 393
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 1 cut(s) 7
Alw26I GTCTC 1 cut(s) 449
AlwI GGATC 4 cut(s) 12, 26, 39, 389
Ama87I CYCGRG 2 cut(s) 118, 241
AoxI GGCC 2 cut(s) 10, 298
ApeKI GCWGC 2 cut(s) 188, 223
AspLEI GCGC 2 cut(s) 81, 409
AspS9I GGNCC 2 cut(s) 11, 437
AsuHPI GGTGA 4 cut(s) 215, 376, 434, 476
AvaI CYCGRG 2 cut(s) 118, 241
AvaII GGWCC 1 cut(s) 437
BamHI GGATCC 2 cut(s) 4, 31
BanII GRGCYC 1 cut(s) 44
BbvI GCAGC 2 cut(s) 200, 210
BccI CCATC 2 cut(s) 304, 350
BciT130I CCWGG 1 cut(s) 9
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 1 cut(s) 441
BfoI RGCGCY 1 cut(s) 82
BfuAI ACCTGC 1 cut(s) 444
BisI GCNGC 2 cut(s) 189, 224
BlsI GCNGC 2 cut(s) 190, 225
Bme1390I CCNGG 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 437
BmeT110I CYCGRG 2 cut(s) 118, 241
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 2 cut(s) 11, 437
BmiI GGNNCC 2 cut(s) 6, 33
BmrFI CCNGG 1 cut(s) 9
BmrI ACTGGG 1 cut(s) 8
BmsI GCATC 2 cut(s) 100, 175
BmuI ACTGGG 1 cut(s) 8
BpmI CTGGAG 1 cut(s) 448
BsaHI GRCGYC 1 cut(s) 318
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 421, 451
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 49, 393
Bse1I ACTGG 2 cut(s) 14, 431
BseBI CCWGG 1 cut(s) 9
BseGI GGATG 2 cut(s) 115, 352
BseLI CCNNNNNNNGG 3 cut(s) 28, 49, 393
BseNI ACTGG 2 cut(s) 14, 431
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 2 cut(s) 200, 210
BshFI GGCC 2 cut(s) 12, 300
BsiHKCI CYCGRG 2 cut(s) 118, 241
BsiSI CCGG 1 cut(s) 67
BslI CCNNNNNNNGG 3 cut(s) 28, 49, 393
BsmAI GTCTC 1 cut(s) 449
BsnI GGCC 2 cut(s) 12, 300
BsoBI CYCGRG 2 cut(s) 118, 241
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 5 cut(s) 4, 31, 253, 381, 391
BspANI GGCC 2 cut(s) 12, 300
BspLI GGNNCC 2 cut(s) 6, 33
BspMI ACCTGC 1 cut(s) 444
BspPI GGATC 4 cut(s) 12, 26, 39, 389
BsrI ACTGG 2 cut(s) 14, 431
BssMI GATC 5 cut(s) 4, 31, 253, 381, 391
BssNI GRCGYC 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 9
Bst4CI ACNGT 2 cut(s) 58, 340
Bst6I CTCTTC 2 cut(s) 158, 185
BstACI GRCGYC 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 36, 235
BstF5I GGATG 2 cut(s) 115, 352
BstH2I RGCGCY 1 cut(s) 82
BstHHI GCGC 2 cut(s) 81, 409
BstKTI GATC 5 cut(s) 7, 34, 256, 384, 394
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 5 cut(s) 4, 31, 253, 381, 391
BstNI CCWGG 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 200, 210
BstX2I RGATCY 2 cut(s) 4, 31
BstYI RGATCY 2 cut(s) 4, 31
BsuRI GGCC 2 cut(s) 12, 300
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 2 cut(s) 115, 352
BtsIMutI CAGTG 1 cut(s) 336
BveI ACCTGC 1 cut(s) 444
CfoI GCGC 2 cut(s) 81, 409
Cfr13I GGNCC 2 cut(s) 11, 437
Csp6I GTAC 2 cut(s) 72, 123
CviJI RGCY 8 cut(s) 12, 42, 66, 129, 223, 268, 283, 300
CviKI_1 RGCY 8 cut(s) 12, 42, 66, 129, 223, 268, 283, 300
CviQI GTAC 2 cut(s) 72, 123
DdeI CTNAG 2 cut(s) 36, 235
DpnI GATC 5 cut(s) 6, 33, 255, 383, 393
DpnII GATC 5 cut(s) 4, 31, 253, 381, 391
Eam1104I CTCTTC 2 cut(s) 158, 185
EarI CTCTTC 2 cut(s) 158, 185
Eco24I GRGCYC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 437
Eco88I CYCGRG 2 cut(s) 118, 241
EcoRII CCWGG 1 cut(s) 7
EcoT38I GRGCYC 1 cut(s) 44
FaiI YATR 3 cut(s) 29, 95, 306
FblI GTMKAC 2 cut(s) 18, 213
Fnu4HI GCNGC 2 cut(s) 189, 224
FokI GGATG 2 cut(s) 122, 359
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 2 cut(s) 189, 224
FspBI CTAG 1 cut(s) 441
FspI TGCGCA 1 cut(s) 408
GlaI GCGC 2 cut(s) 80, 408
GluI GCNGC 2 cut(s) 189, 224
GsuI CTGGAG 1 cut(s) 448
HaeII RGCGCY 1 cut(s) 82
HaeIII GGCC 2 cut(s) 12, 300
HapII CCGG 1 cut(s) 67
HhaI GCGC 2 cut(s) 81, 409
Hin1I GRCGYC 1 cut(s) 318
Hin6I GCGC 2 cut(s) 79, 407
HinP1I GCGC 2 cut(s) 79, 407
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 7 cut(s) 46, 85, 97, 140, 167, 230, 239
HpaII CCGG 1 cut(s) 67
HphI GGTGA 4 cut(s) 215, 376, 434, 476
Hpy166II GTNNAC 3 cut(s) 19, 171, 214
Hpy188I TCNGA 3 cut(s) 90, 253, 396
Hpy188III TCNNGA 1 cut(s) 446
Hpy8I GTNNAC 3 cut(s) 19, 171, 214
Hpy99I CGWCG 3 cut(s) 218, 320, 323
HpyAV CCTTC 2 cut(s) 311, 443
HpyCH4III ACNGT 2 cut(s) 58, 340
HpyCH4IV ACGT 2 cut(s) 216, 318
HpyCH4V TGCA 4 cut(s) 113, 188, 226, 471
HpyF3I CTNAG 2 cut(s) 36, 235
HpySE526I ACGT 2 cut(s) 216, 318
Hsp92I GRCGYC 1 cut(s) 318
HspAI GCGC 2 cut(s) 79, 407
Kzo9I GATC 5 cut(s) 4, 31, 253, 381, 391
LpnPI CCDG 9 cut(s) 21, 27, 80, 95, 185, 258, 269, 412, 439
Lsp1109I GCAGC 2 cut(s) 200, 210
LweI GCATC 2 cut(s) 100, 175
MaeI CTAG 1 cut(s) 441
MaeII ACGT 2 cut(s) 216, 318
MaeIII GTNAC 4 cut(s) 52, 103, 203, 422
MalI GATC 5 cut(s) 6, 33, 255, 383, 393
MboI GATC 5 cut(s) 4, 31, 253, 381, 391
MboII GAAGA 3 cut(s) 145, 172, 270
MflI RGATCY 2 cut(s) 4, 31
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 1 cut(s) 261
MlyI GAGTC 3 cut(s) 134, 176, 233
MnlI CCTC 3 cut(s) 32, 161, 188
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 9
MvaI CCWGG 1 cut(s) 9
NdeII GATC 5 cut(s) 4, 31, 253, 381, 391
NlaIV GGNNCC 2 cut(s) 6, 33
NmuCI GTSAC 2 cut(s) 203, 422
NsbI TGCGCA 1 cut(s) 408
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PfeI GAWTC 4 cut(s) 46, 85, 97, 230
PflFI GACNNNGTC 1 cut(s) 209
PkrI GCNGC 2 cut(s) 190, 225
PleI GAGTC 3 cut(s) 134, 175, 233
PpsI GAGTC 3 cut(s) 134, 175, 233
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
PspN4I GGNNCC 2 cut(s) 6, 33
PspPI GGNCC 2 cut(s) 11, 437
PsuI RGATCY 2 cut(s) 4, 31
PsyI GACNNNGTC 1 cut(s) 209
RsaI GTAC 2 cut(s) 73, 124
RsaNI GTAC 2 cut(s) 72, 123
SalI GTCGAC 1 cut(s) 212
SatI GCNGC 2 cut(s) 189, 224
Sau3AI GATC 5 cut(s) 4, 31, 253, 381, 391
Sau96I GGNCC 2 cut(s) 11, 437
SchI GAGTC 3 cut(s) 134, 176, 233
ScrFI CCNGG 1 cut(s) 9
SduI GDGCHC 1 cut(s) 44
SetI ASST 5 cut(s) 24, 219, 277, 321, 458
SfaNI GCATC 2 cut(s) 100, 175
SinI GGWCC 1 cut(s) 437
Sse9I AATT 1 cut(s) 261
SspMI CTAG 1 cut(s) 441
StyD4I CCNGG 1 cut(s) 7
TaaI ACNGT 2 cut(s) 58, 340
TaiI ACGT 2 cut(s) 219, 321
TaqI TCGA 4 cut(s) 183, 213, 256, 447
TasI AATT 1 cut(s) 261
TfiI GAWTC 4 cut(s) 46, 85, 97, 230
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 2 cut(s) 203, 422
TseI GCWGC 2 cut(s) 188, 223
Tsp45I GTSAC 2 cut(s) 203, 422
TspDTI ATGAA 2 cut(s) 110, 293
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 1 cut(s) 343
Tth111I GACNNNGTC 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 437
XmiI GTMKAC 2 cut(s) 18, 213
XspI CTAG 1 cut(s) 441
ZraI GACGTC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.