Rh1BG177500

Nsp1-like C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0013006
Physical Location & Seq
Forward (+)
28338868 .. 28344540
5673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG177500.1

Sequence Viewer

Length: 2286 bp
ATGTCGGGTTTCAATTTCGGATCCTCCGCGGCCTCCGCTTCACAATCCACTTCCCCTTTCGGATCCTCCACCCCTACTTTCTCATTCACCTCCTCCCCTTCCCTCTTCGGATCCTCCGCGCCCGCCACCGCCACCACCGGGTTCGGACTCGGATCCTCCTCTTTCGGCTCCGCTCCCTCAAACCCCTCCACCTCCTCCTCCTCCCCTTTCAGCTTCTCATCCAACACCGCCTCCTCCGCCGCTTTCGGTACCCCAAACCCTAGCCCCGCCCCGAACCCAAACCAGAACCCGTTTCCCTCATTCGGAGTCGGATCCTCCACCGCCTCAACCACCACGACCACCGCCGCAGCCCCTTCATTCGGATTCAATCCCTCCACCGCTGGTTCAGGCTCCACTCCGTCGCAGCCTATGTTCGGCTCAACCCCATCTCAGTCCCTGTTTGGCTCATCCTCATCGGCGCAGGCTCCGGGTTCTACCCCATCCTTATTCGGGTCAACTGCATCTGCCTCCGCTTCCGGCACTACCAGCTCTCTGTTCGGCTCGGCTTCGGCGGCTTCACCTTTGTTTGGTACTACTACTACTACTACTTCTTCTTTCGCTCCCAGCACAGGCTCAGCTCTGTTTGGCTCATCCTCTTCATCGGCGGCGCCGCCCTCCTCCACCACTCAGAACTTGTTTGGCTCTGCTCTGTCGTCCGCGGCTCCAACCACTCCCTCATTCCCAAGCTTTTCGAGCTCTTCCTCTGCAGCCCCAACCACTCCCGCATTCTCAAGCTTTCCGAACTCTTCCTCTGCAGCCTCAACCACTCCTGCATTCTCCAGCTTTTTGGGCTCTTCGTCTGCAGCATCAACCACTCCCACTCCCGCATTCCCATCCTTTTCGAGCTCTTCCGCTGCAGCCTCAACCACTTCTCCTTTCGCAGGCTTTCCGAGCTCTTCTTCTGCAGCTCCGGCCACTTCCTCGTTCGCAAGCTCTTCGGGTTTCTCATCATTCCCGAGTTCAGCTCCTGCGAAGCCCACAGCAGCATCCACACCTACTACTACGGCGCCTTCATCAAGCAGCAGTTTCAACCTCTCATTTGGAACGCCCACATCCTCGGCTTCTCAACCTTCTTTCGGATTCAGCAATGCTGCCTCATCAGCCGCGGCGGCTTCCACCGCATTGTCATTTTCAAAGTCTTCATCGCCATTGTTTTCGACGGTCACGACCACAACGGCTTCTTCAACTCCGGCTGCAAGTAGTACTACTACACAAGCTCCTTTCTCTTTGTCGGCTTTCAATGCGACTCCTACTGCTCCTCCTGCTGCGAGCACCACTGCACTGACTTCAACGGCAGTGCCTGCCAGCTCAGCTGCTGCTTCATCAGGCACTACGACGAGTTCATTCACGGGTTTCTCCATAACACCTGCTTCTTCTGCGGCTACTGCTTCTTCTTCAGGCCTTTCATTGTTTTCCAGTGCCTCAGTGCCCGCCTCCTCATCACAAGCACAACCAAGCACTAGTTTGCCCGCATTTGGTCTCACTACTTCAGCAACTGCAACTACAACGACGACTGGTACCAGTACCTCTGCAGCTCCGACATCAAGTGCACTTGCTGTGGCTTCTACTAGTGGGACAACCTCAAACGTTAATGGCAGCACTACAGTATCTACGACAACACCAAAATTACCTTCTGAGATCACTGGGAAGACTGTTGAGGAGATTATCAAGGAGTGGAATGCTGAGCTTCAAGAGCGTACTGGAAAATTCCGAAAGCAGGCTAATGCAATAGCAGACTGGGACAGGAGGATTTTGCAGAACCGTGATGTTCTTCTTAGGCTCGAGATCGAAGTGGCAAATGTGGTAGATACCCAAGCTAAGGTGGAGCGGCAACTAGAGTTAATTGAGACTCATCAGCAAGAGGTCGATAAGGCTTTACAAAGCATGGAACAAGAAGCTGAGCGTATATACAAGGATGAGCGTGGATCGCTTCTTGATGATGAAGCTGCATCCACAAGAGATGCAATGTATGAGCAGGCTGAGTTTATAGAGAGGGAGCTAGAGCAGGTGACAGAGCAAATCAAATCAATTATTGAGACTGTAAATGCCAACCAGGGAGGAGAATTGGAAGTAAATGATGGGATGGCTCCACTAGATGTGGTTGTACGAATCTTAAACAACCAACTAAGCTCTTTAATGTGGATTGATGAAAAGGCCGAAGAGTTCTCTTCGCGAATTCAGAAGCTTGCCAATCAAGGTCCTGCTGCAGATCGTGAATTGATGGGTCCAAGATACTGGATGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0003674 GO:0005102 GO:0005198 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005642 GO:0005643 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006403 GO:0006405 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0008092 GO:0008104 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0008285 GO:0008289 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010648 GO:0010928 GO:0010930 GO:0010941 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016043 GO:0016070 GO:0017038 GO:0017056 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019894 GO:0019904 GO:0019953 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030159 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032182 GO:0032386 GO:0032501 GO:0032504 GO:0032774 GO:0032879 GO:0032880 GO:0032947 GO:0032991 GO:0033036 GO:0033157 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0035257 GO:0042127 GO:0042169 GO:0042175 GO:0042306 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043122 GO:0043123 GO:0043130 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044613 GO:0044703 GO:0045184 GO:0045893 GO:0045935 GO:0046483 GO:0046822 GO:0046907 GO:0046966 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051223 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051259 GO:0051291 GO:0051427 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0060341 GO:0060548 GO:0065003 GO:0065007 GO:0070013 GO:0070201 GO:0070206 GO:0070208 GO:0070727 GO:0071166 GO:0071426 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0098589 GO:0098805 GO:1900180 GO:1901360 GO:1901362 GO:1901576 GO:1902531 GO:1902533 GO:1902680 GO:1903506 GO:1903508 GO:1903827 GO:1904589 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nsp1_C Nucleoporin_FG

Protein Analysis

761

Amino Acids

75.97

Weight (kDa)

4.66

Isoelectric Point (pI)

57.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nsp1_C PF05064 551 - 654 6.8e-22 Nsp1-like C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45000
fragaria_vesca FvH4_7g10470 FvH4_7g10470 FvH4_7g10470
malus_domestica MD07G1110700.v1.1
prunus_persica Prupe.2G134200_v2.0.a1 Prupe.2G134200_v2.0.a1
pyrus_communis pycom07g09560
rosa_chinensis RchiOBHm_Chr1g0348261
rosa_laevigata RLG00000028672 RLG00000028676
rosa_roxburghii Rroxscaffold_4G00307070
rosa_rugosa Rorug01G0194000
rosa_samantha Rh1AG211000 Rh1BG177500 Rh1CG195400 Rh1DG207000
rosa_wichuraiana Rw1G017820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1414, 2035
Acc36I ACCTGC 2 cut(s) 1414, 2035
Acc65I GGTACC 2 cut(s) 248, 1556
AccB1I GGYRCC 4 cut(s) 248, 646, 1045, 1556
AccBSI CCGCTC 2 cut(s) 173, 1867
AccII CGCG 5 cut(s) 29, 119, 698, 1145, 2212
AclI AACGTT 1 cut(s) 1626
AcoI YGGCCR 1 cut(s) 951
AcsI RAATTY 2 cut(s) 1745, 2214
AcuI CTGAAG 2 cut(s) 1419, 1512
AcyI GRCGYC 2 cut(s) 647, 1046
AfaI GTAC 7 cut(s) 250, 571, 1243, 1558, 1564, 1738, 2145
AgsI TTSAA 8 cut(s) 13, 367, 1069, 1173, 1224, 1279, 1329, 1730
AhlI ACTAGT 2 cut(s) 1499, 1607
AjnI CCWGG 1 cut(s) 2091
AjuI GAANNNNNNNTTGG 2 cut(s) 1654, 1686
Alw21I GWGCWC 5 cut(s) 737, 887, 935, 1313, 1591
Alw26I GTCTC 3 cut(s) 1523, 1880, 2069
Alw44I GTGCAC 1 cut(s) 1587
AlwNI CAGNNNCTG 5 cut(s) 436, 1007, 1340, 1355, 1535
Ama87I CYCGRG 2 cut(s) 994, 1820
AoxI GGCC 4 cut(s) 30, 951, 1438, 2193
ApaLI GTGCAC 1 cut(s) 1587
ApoI RAATTY 2 cut(s) 1745, 2214
Asp718I GGTACC 2 cut(s) 248, 1556
AspLEI GCGC 4 cut(s) 121, 460, 649, 1048
AspS9I GGNCC 2 cut(s) 2237, 2264
AsuC2I CCSGG 2 cut(s) 139, 468
AsuHPI GGTGA 3 cut(s) 79, 549, 2059
AvaI CYCGRG 2 cut(s) 994, 1820
AvaII GGWCC 2 cut(s) 2237, 2264
BaeGI GKGCMC 2 cut(s) 1470, 1591
BaeI ACNNNNGTAYC 2 cut(s) 1629, 1662
BamHI GGATCC 5 cut(s) 20, 62, 110, 152, 311
BanI GGYRCC 4 cut(s) 248, 646, 1045, 1556
BanII GRGCYC 4 cut(s) 737, 833, 887, 935
BbsI GAAGAC 2 cut(s) 1170, 1694
Bbv12I GWGCWC 5 cut(s) 737, 887, 935, 1313, 1591
BccI CCATC 6 cut(s) 433, 487, 880, 2111, 2116, 2254
BceAI ACGGC 3 cut(s) 1059, 1230, 1347
BcgI CGANNNNNNTGC 2 cut(s) 957, 991
BciT130I CCWGG 1 cut(s) 2093
BcnI CCSGG 2 cut(s) 139, 468
BcoDI GTCTC 3 cut(s) 1523, 1880, 2069
BcuI ACTAGT 2 cut(s) 1499, 1607
BfaI CTAG 6 cut(s) 261, 1500, 1608, 1874, 2039, 2132
BfmI CTRYAG 8 cut(s) 744, 792, 840, 894, 942, 1569, 1641, 2244
BfoI RGCGCY 2 cut(s) 650, 1049
BfuAI ACCTGC 2 cut(s) 1414, 2035
BglI GCCNNNNNGGC 1 cut(s) 1148
BlpI GCTNAGC 4 cut(s) 613, 1348, 1722, 1938
BmcAI AGTACT 1 cut(s) 1243
Bme1390I CCNGG 3 cut(s) 139, 468, 2093
Bme18I GGWCC 2 cut(s) 2237, 2264
BmeT110I CYCGRG 2 cut(s) 994, 1820
BmgT120I GGNCC 2 cut(s) 2237, 2264
BmrFI CCNGG 3 cut(s) 139, 468, 2093
BmrI ACTGGG 2 cut(s) 1692, 1786
BmsI GCATC 5 cut(s) 509, 854, 1034, 1990, 1997
BmuI ACTGGG 2 cut(s) 1692, 1786
BpiI GAAGAC 2 cut(s) 1170, 1694
BplI GAGNNNNNCTC 2 cut(s) 988, 1020
BpmI CTGGAG 1 cut(s) 802
Bpu10I CCTNAGC 1 cut(s) 1857
Bpu1102I GCTNAGC 4 cut(s) 613, 1348, 1722, 1938
BpuEI CTTGAG 1 cut(s) 754
BpuMI CCSGG 2 cut(s) 139, 468
BsaHI GRCGYC 2 cut(s) 647, 1046
BsaI GGTCTC 1 cut(s) 1523
BsaJI CCNNGG 5 cut(s) 27, 696, 1095, 1143, 2092
Bse1I ACTGG 7 cut(s) 1455, 1558, 1560, 1687, 1744, 1781, 2279
Bse3DI GCAATG 2 cut(s) 1132, 2010
BseBI CCWGG 1 cut(s) 2093
BseDI CCNNGG 5 cut(s) 27, 696, 1095, 1143, 2092
BseMI GCAATG 2 cut(s) 1132, 2010
BseMII CTCAG 9 cut(s) 443, 627, 680, 1362, 1476, 1665, 1713, 1929, 2010
BseNI ACTGG 7 cut(s) 1455, 1558, 1560, 1687, 1744, 1781, 2279
BseSI GKGCMC 2 cut(s) 1470, 1591
BseYI CCCAGC 1 cut(s) 602
BsgI GTGCAG 1 cut(s) 1302
Bsh1236I CGCG 5 cut(s) 29, 119, 698, 1145, 2212
BshFI GGCC 4 cut(s) 32, 953, 1440, 2195
BshNI GGYRCC 4 cut(s) 248, 646, 1045, 1556
BsiHKAI GWGCWC 5 cut(s) 737, 887, 935, 1313, 1591
BsiHKCI CYCGRG 2 cut(s) 994, 1820
BsiSI CCGG 5 cut(s) 138, 467, 516, 950, 1229
BslFI GGGAC 3 cut(s) 418, 1627, 1793
BsmAI GTCTC 3 cut(s) 1523, 1880, 2069
BsmFI GGGAC 3 cut(s) 418, 1627, 1793
BsmI GAATGC 4 cut(s) 764, 812, 866, 1723
BsnI GGCC 4 cut(s) 32, 953, 1440, 2195
Bso31I GGTCTC 1 cut(s) 1523
BsoBI CYCGRG 2 cut(s) 994, 1820
Bsp1286I GDGCHC 7 cut(s) 737, 833, 887, 935, 1313, 1470, 1591
Bsp143I GATC 9 cut(s) 20, 62, 110, 152, 311, 1677, 1824, 1964, 2248
Bsp1720I GCTNAGC 4 cut(s) 613, 1348, 1722, 1938
Bsp68I TCGCGA 1 cut(s) 2212
BspANI GGCC 4 cut(s) 32, 953, 1440, 2195
BspCNI CTCAG 9 cut(s) 442, 626, 679, 1361, 1475, 1666, 1714, 1930, 2011
BspFNI CGCG 5 cut(s) 29, 119, 698, 1145, 2212
BspHI TCATGA 1 cut(s) 2282
BspMAI CTGCAG 7 cut(s) 748, 796, 844, 898, 946, 1573, 2248
BspMI ACCTGC 2 cut(s) 1414, 2035
BspQI GCTCTTC 5 cut(s) 742, 838, 892, 940, 979
BspT107I GGYRCC 4 cut(s) 248, 646, 1045, 1556
BspTNI GGTCTC 1 cut(s) 1523
BsrBI CCGCTC 2 cut(s) 173, 1867
BsrDI GCAATG 2 cut(s) 1132, 2010
BsrI ACTGG 7 cut(s) 1455, 1558, 1560, 1687, 1744, 1781, 2279
BssECI CCNNGG 5 cut(s) 27, 696, 1095, 1143, 2092
BssMI GATC 9 cut(s) 20, 62, 110, 152, 311, 1677, 1824, 1964, 2248
BssNI GRCGYC 2 cut(s) 647, 1046
Bst2UI CCWGG 1 cut(s) 2093
Bst4CI ACNGT 5 cut(s) 1201, 1645, 1693, 1802, 2080
BstACI GRCGYC 2 cut(s) 647, 1046
BstAPI GCANNNNNTGC 1 cut(s) 1340
BstDSI CCRYGG 3 cut(s) 27, 696, 1143
BstENI CCTNNNNNAGG 1 cut(s) 918
BstFNI CGCG 5 cut(s) 29, 119, 698, 1145, 2212
BstH2I RGCGCY 2 cut(s) 650, 1049
BstHHI GCGC 4 cut(s) 121, 460, 649, 1048
BstKTI GATC 9 cut(s) 23, 65, 113, 155, 314, 1680, 1827, 1967, 2251
BstMAI GTCTC 3 cut(s) 1523, 1880, 2069
BstMBI GATC 9 cut(s) 20, 62, 110, 152, 311, 1677, 1824, 1964, 2248
BstNI CCWGG 1 cut(s) 2093
BstSCI CCNGG 3 cut(s) 137, 466, 2091
BstSFI CTRYAG 8 cut(s) 744, 792, 840, 894, 942, 1569, 1641, 2244
BstSLI GKGCMC 2 cut(s) 1470, 1591
BstUI CGCG 5 cut(s) 29, 119, 698, 1145, 2212
BstV2I GAAGAC 2 cut(s) 1170, 1694
BstX2I RGATCY 5 cut(s) 20, 62, 110, 152, 311
BstXI CCANNNNNNTGG 2 cut(s) 826, 2274
BstYI RGATCY 5 cut(s) 20, 62, 110, 152, 311
BsuRI GGCC 4 cut(s) 32, 953, 1440, 2195
BtgI CCRYGG 3 cut(s) 27, 696, 1143
BtgZI GCGATG 1 cut(s) 1167
BtsI GCAGTG 2 cut(s) 1314, 1341
BtsIMutI CAGTG 6 cut(s) 1314, 1319, 1341, 1462, 1470, 1680
BtuMI TCGCGA 1 cut(s) 2212
BveI ACCTGC 2 cut(s) 1414, 2035
CaiI CAGNNNCTG 5 cut(s) 436, 1007, 1340, 1355, 1535
CciI TCATGA 1 cut(s) 2282
CfoI GCGC 4 cut(s) 121, 460, 649, 1048
Cfr13I GGNCC 2 cut(s) 2237, 2264
Cfr42I CCGCGG 3 cut(s) 30, 699, 1146
Csp6I GTAC 7 cut(s) 249, 570, 1242, 1557, 1563, 1737, 2144
CviAII CATG 2 cut(s) 1924, 2283
CviQI GTAC 7 cut(s) 249, 570, 1242, 1557, 1563, 1737, 2144
DinI GGCGCC 2 cut(s) 648, 1047
DpnI GATC 9 cut(s) 22, 64, 112, 154, 313, 1679, 1826, 1966, 2250
DpnII GATC 9 cut(s) 20, 62, 110, 152, 311, 1677, 1824, 1964, 2248
EaeI YGGCCR 1 cut(s) 951
EciI GGCGGA 1 cut(s) 226
Ecl136II GAGCTC 3 cut(s) 735, 885, 933
Eco147I AGGCCT 1 cut(s) 1440
Eco24I GRGCYC 4 cut(s) 737, 833, 887, 935
Eco31I GGTCTC 1 cut(s) 1523
Eco47I GGWCC 2 cut(s) 2237, 2264
Eco53kI GAGCTC 3 cut(s) 735, 885, 933
Eco57I CTGAAG 2 cut(s) 1419, 1512
Eco88I CYCGRG 2 cut(s) 994, 1820
EcoICRI GAGCTC 3 cut(s) 735, 885, 933
EcoNI CCTNNNNNAGG 1 cut(s) 918
EcoO109I RGGNCCY 1 cut(s) 2237
EcoRI GAATTC 1 cut(s) 2214
EcoRII CCWGG 1 cut(s) 2091
EcoT38I GRGCYC 4 cut(s) 737, 833, 887, 935
EgeI GGCGCC 2 cut(s) 648, 1047
EheI GGCGCC 2 cut(s) 648, 1047
FaeI CATG 2 cut(s) 1927, 2286
FaiI YATR 8 cut(s) 410, 1400, 1925, 1946, 1948, 2010, 2027, 2284
FaqI GGGAC 3 cut(s) 418, 1627, 1793
FatI CATG 2 cut(s) 1923, 2282
FauI CCCGC 6 cut(s) 130, 274, 769, 871, 1477, 1516
FriOI GRGCYC 4 cut(s) 737, 833, 887, 935
FspBI CTAG 6 cut(s) 261, 1500, 1608, 1874, 2039, 2132
GlaI GCGC 4 cut(s) 120, 459, 648, 1047
GsaI CCCAGC 1 cut(s) 606
GsuI CTGGAG 1 cut(s) 802
HaeII RGCGCY 2 cut(s) 650, 1049
HaeIII GGCC 4 cut(s) 32, 953, 1440, 2195
HapII CCGG 5 cut(s) 138, 467, 516, 950, 1229
HhaI GCGC 4 cut(s) 121, 460, 649, 1048
Hin1I GRCGYC 2 cut(s) 647, 1046
Hin1II CATG 2 cut(s) 1927, 2286
Hin6I GCGC 4 cut(s) 119, 458, 647, 1046
HinP1I GCGC 4 cut(s) 119, 458, 647, 1046
HincII GTYRAC 1 cut(s) 495
HindII GTYRAC 1 cut(s) 495
HindIII AAGCTT 3 cut(s) 724, 772, 2222
HinfI GANTC 7 cut(s) 147, 306, 363, 1119, 1285, 1888, 2148
HpaII CCGG 5 cut(s) 138, 467, 516, 950, 1229
HphI GGTGA 3 cut(s) 79, 549, 2059
Hpy166II GTNNAC 2 cut(s) 495, 1589
Hpy188III TCNNGA 8 cut(s) 994, 1204, 1730, 1822, 1973, 2211, 2252, 2283
Hpy8I GTNNAC 2 cut(s) 495, 1589
Hpy99I CGWCG 4 cut(s) 403, 1201, 1378, 1552
HpyAV CCTTC 5 cut(s) 108, 363, 1059, 1119, 1680
HpyCH4III ACNGT 5 cut(s) 1201, 1645, 1693, 1802, 2080
HpyCH4IV ACGT 1 cut(s) 1626
HpySE526I ACGT 1 cut(s) 1626
Hsp92I GRCGYC 2 cut(s) 647, 1046
Hsp92II CATG 2 cut(s) 1927, 2286
HspAI GCGC 4 cut(s) 119, 458, 647, 1046
KasI GGCGCC 2 cut(s) 646, 1045
KpnI GGTACC 2 cut(s) 252, 1560
KspI CCGCGG 3 cut(s) 30, 699, 1146
Kzo9I GATC 9 cut(s) 20, 62, 110, 152, 311, 1677, 1824, 1964, 2248
LguI GCTCTTC 5 cut(s) 742, 838, 892, 940, 979
LweI GCATC 5 cut(s) 509, 854, 1034, 1990, 1997
MaeI CTAG 6 cut(s) 261, 1500, 1608, 1874, 2039, 2132
MaeII ACGT 1 cut(s) 1626
MaeIII GTNAC 2 cut(s) 1201, 2047
MalI GATC 9 cut(s) 22, 64, 112, 154, 313, 1679, 1826, 1966, 2250
MbiI CCGCTC 2 cut(s) 173, 1867
MboI GATC 9 cut(s) 20, 62, 110, 152, 311, 1677, 1824, 1964, 2248
MflI RGATCY 5 cut(s) 20, 62, 110, 152, 311
MhlI GDGCHC 7 cut(s) 737, 833, 887, 935, 1313, 1470, 1591
MluCI AATT 8 cut(s) 13, 1664, 1745, 1881, 2067, 2102, 2214, 2255
Mly113I GGCGCC 2 cut(s) 647, 1046
MlyI GAGTC 4 cut(s) 141, 315, 1279, 1882
MmeI TCCRAC 4 cut(s) 246, 289, 728, 1601
MseI TTAA 4 cut(s) 1629, 1880, 2153, 2174
MspA1I CMGCKG 6 cut(s) 29, 380, 698, 893, 1145, 1352
MspI CCGG 5 cut(s) 138, 467, 516, 950, 1229
MspR9I CCNGG 3 cut(s) 139, 468, 2093
Mva1269I GAATGC 4 cut(s) 764, 812, 866, 1723
MvaI CCWGG 1 cut(s) 2093
MvnI CGCG 5 cut(s) 29, 119, 698, 1145, 2212
NarI GGCGCC 2 cut(s) 647, 1046
NciI CCSGG 2 cut(s) 139, 468
NdeII GATC 9 cut(s) 20, 62, 110, 152, 311, 1677, 1824, 1964, 2248
NlaIII CATG 2 cut(s) 1927, 2286
NmeAIII GCCGAG 2 cut(s) 521, 1076
NmuCI GTSAC 2 cut(s) 1201, 2047
NruI TCGCGA 1 cut(s) 2212
PaeR7I CTCGAG 1 cut(s) 1820
PagI TCATGA 1 cut(s) 2282
PaqCI CACCTGC 2 cut(s) 1414, 2035
PceI AGGCCT 1 cut(s) 1440
PciSI GCTCTTC 5 cut(s) 742, 838, 892, 940, 979
PcsI WCGNNNNNNNCGW 1 cut(s) 1202
PctI GAATGC 4 cut(s) 764, 812, 866, 1723
PfeI GAWTC 3 cut(s) 363, 1119, 2148
PleI GAGTC 4 cut(s) 141, 314, 1279, 1882
PluTI GGCGCC 2 cut(s) 650, 1049
PpsI GAGTC 4 cut(s) 141, 314, 1279, 1882
PpuMI RGGWCCY 1 cut(s) 2237
Psp124BI GAGCTC 3 cut(s) 737, 887, 935
Psp1406I AACGTT 1 cut(s) 1626
Psp5II RGGWCCY 1 cut(s) 2237
Psp6I CCWGG 1 cut(s) 2091
PspFI CCCAGC 1 cut(s) 602
PspGI CCWGG 1 cut(s) 2091
PspPI GGNCC 2 cut(s) 2237, 2264
PspPPI RGGWCCY 1 cut(s) 2237
PstI CTGCAG 7 cut(s) 748, 796, 844, 898, 946, 1573, 2248
PstNI CAGNNNCTG 5 cut(s) 436, 1007, 1340, 1355, 1535
PsuI RGATCY 5 cut(s) 20, 62, 110, 152, 311
PvuII CAGCTG 1 cut(s) 1352
RruI TCGCGA 1 cut(s) 2212
RsaI GTAC 7 cut(s) 250, 571, 1243, 1558, 1564, 1738, 2145
RsaNI GTAC 7 cut(s) 249, 570, 1242, 1557, 1563, 1737, 2144
SacI GAGCTC 3 cut(s) 737, 887, 935
SacII CCGCGG 3 cut(s) 30, 699, 1146
SapI GCTCTTC 5 cut(s) 742, 838, 892, 940, 979
SaqAI TTAA 4 cut(s) 1629, 1880, 2153, 2174
Sau3AI GATC 9 cut(s) 20, 62, 110, 152, 311, 1677, 1824, 1964, 2248
Sau96I GGNCC 2 cut(s) 2237, 2264
ScaI AGTACT 1 cut(s) 1243
SchI GAGTC 4 cut(s) 141, 315, 1279, 1882
ScrFI CCNGG 3 cut(s) 139, 468, 2093
SduI GDGCHC 7 cut(s) 737, 833, 887, 935, 1313, 1470, 1591
SfaNI GCATC 5 cut(s) 509, 854, 1034, 1990, 1997
SfcI CTRYAG 8 cut(s) 744, 792, 840, 894, 942, 1569, 1641, 2244
SfoI GGCGCC 2 cut(s) 648, 1047
Sfr274I CTCGAG 1 cut(s) 1820
Sfr303I CCGCGG 3 cut(s) 30, 699, 1146
SgrBI CCGCGG 3 cut(s) 30, 699, 1146
SinI GGWCC 2 cut(s) 2237, 2264
SlaI CTCGAG 1 cut(s) 1820
SmlI CTYRAG 2 cut(s) 769, 1820
SmoI CTYRAG 2 cut(s) 769, 1820
SpeI ACTAGT 2 cut(s) 1499, 1607
Sse9I AATT 8 cut(s) 13, 1664, 1745, 1881, 2067, 2102, 2214, 2255
SseBI AGGCCT 1 cut(s) 1440
SspDI GGCGCC 2 cut(s) 646, 1045
SspMI CTAG 6 cut(s) 261, 1500, 1608, 1874, 2039, 2132
SstI GAGCTC 3 cut(s) 737, 887, 935
StuI AGGCCT 1 cut(s) 1440
StyD4I CCNGG 3 cut(s) 137, 466, 2091
TaaI ACNGT 5 cut(s) 1201, 1645, 1693, 1802, 2080
TaiI ACGT 1 cut(s) 1629
TaqI TCGA 6 cut(s) 731, 881, 1196, 1821, 1827, 1905
TasI AATT 8 cut(s) 13, 1664, 1745, 1881, 2067, 2102, 2214, 2255
TatI WGTACW 1 cut(s) 1241
TfiI GAWTC 3 cut(s) 363, 1119, 2148
Tru1I TTAA 4 cut(s) 1629, 1880, 2153, 2174
Tru9I TTAA 4 cut(s) 1629, 1880, 2153, 2174
TscAI CASTG 6 cut(s) 1321, 1326, 1341, 1462, 1470, 1687
TseFI GTSAC 2 cut(s) 1201, 2047
Tsp45I GTSAC 2 cut(s) 1201, 2047
TspDTI ATGAA 9 cut(s) 345, 627, 1041, 1170, 1350, 1371, 1434, 1995, 2202
TspGWI ACGGA 1 cut(s) 387
TspRI CASTG 6 cut(s) 1321, 1326, 1341, 1462, 1470, 1687
VneI GTGCAC 1 cut(s) 1587
VpaK11BI GGWCC 2 cut(s) 2237, 2264
XagI CCTNNNNNAGG 1 cut(s) 918
XapI RAATTY 2 cut(s) 1745, 2214
XhoI CTCGAG 1 cut(s) 1820
XspI CTAG 6 cut(s) 261, 1500, 1608, 1874, 2039, 2132
ZrmI AGTACT 1 cut(s) 1243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.