Rh1DG207000

Nsp1-like C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0013006
Physical Location & Seq
Forward (+)
40502896 .. 40509009
6114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG207000.1

Sequence Viewer

Length: 2010 bp
ATGTCGGGTTTCAATTTCGGATCCTCCGCGGCCTCCGCTTCACAATCCACTTCCCCTTTCGGATCCTCCACCCCTACTTTCTCATTCACCTCCTCCCCTTCCCTCTTCGGATCCTCCGCGCCCGCCACCGCCACCACCGGGTTCGGACTCGGATCCTCCTCTTTCGGCTCCGCTCCCTCAAACCCCTCCACCTCCTCCTCCTCCCCTTTCAGCTTCTCATCCAACACCGCCTCCTCCGCCGCTTTCGGTACCCCAAACCCTAGCCCCGCCCCGAACCCAAACCAGAACCCGTTTCCCTCATTCGGAGTCGGATCCTCCACCGCCTCAACCACCACGACCACCGCCGCAGCCCCTTCATTCGGATTCAATCCCTCCACCGCTGGTTCAGGCTCCACTCCGTCGCAGCCTATGTTCGGCTCAACCCCATCTCAGTCCCTGTTTGGCTCATCCTCATCGGCGCAGGCTCCGGGTTCTACCCCATCCTTATTCGGGTCAACTGCATCTGCCTCCGCTTCCGGCACTACCAGCTCTCTGTTCGGCTCGGCTTCGGCGGCTTCACCTTTGTTTGGTACTACTACTACTACTACTTCTTCTTTCGCTCCCAGCACAGGCTCAGCTCTGTTTGGCTCATCCTCTTCATCGGCGGCGCCGCCCTCCTCCACCACTCAGAACTTGTTTGGCTCTGCTCTGTCGTCCGCGGCTCCAACCACTCCCTCATTCCCAAGCTTTTCGAGCTCTTCCTCTGCAGCCCCAACCACTCCCGCATTCTCAAGCTTTCCGAACTCTTCCTCTGCAGCCTCAACCACTCCTGCATTCTCCAGCTTTTTGGGCTCTTCGTCTGCAGCATCAACCACTCCCACTCCCGCATTCCCATCCTTTTCGAGCTCTTCCGCTGCAGCCTCAACCACTTCTCCTTTCGCAGGCTTTCCGAGCTCTTCTTCTGCAGCTCCGGCCACTTCCTCGTTCGCAAGCTCTTCGGGTTTCTCATCATTCCCGAGTTCAGCTCCTGCGAAGCCCACAGCAGCATCCACACCTACTACTACGGCGCCTTCATCAAGCAGCAGTTTCAACCTCTCATTTGGAACGCCCACATCCTCGGCTTCTCAACCTTCTTTCGGATTCAGCAATGCTGCCTCATCAGCCGCGGCGGCTTCCACCGCATTGTCATTTTCAAAGTCTTCATCGCCATTGTTTTCGACGGTCACGACCACAACGGCTTCTTCAACTCCGGCTGCAAGTAGTACTACTACACAAGCTCCTTTCTCTTTGTCGGCTTTCAATGCGACTCCTACTGCTCCTCCTGCTGCGAGCACCACTGCACTGACTTCAACGGCAGTGCCTGCCAGCTCAGCTGCTGCTTCATCAGGCACTACGACGAGTTCATTCACGGGTTTCTCCATAACACCTGCTTCTTCTGCGGCTACTGCTTCTTCTTCAGGCCTTTCATTGTTTTCCAGTGCCTCAGTGCCCGCCTCCTCATCACAAGCACAACCAAGCACTAGTTTGCCCGCATTTGGTCTCACTACTTCAGCAACTGCAACTACAACGACGACTGGTACCAGTACCTCTGCAGCTCCGACATCAAGTGCACTTGCTGTGGCTTCTACTAGTGGGACAACCTCAAACGTTAATGGCAGCACTACAGTATCTACGACAACACCAAAATTACCTTCTGAGATCACTGGGAAGACTGTTGAGGAGATTATCAAGGAGTGGAATGCTGAGCTTCAAGAGCGTACTGGAAAATTCCGAAAGCAGGCTAATGCAATAGCAGACTGGGACAGGAGGATTTTGCAGAACCGTGATGTTCTTCTTAGGCTCGAGATCGAAGTGGCAAATGTGGTAGATACCCAAGCTAAGGTGGAGCGGCAACTAGAGTTAATTGAGACTCATCAGCAAGAGGTCGATAAGGCTTTACAAAGCATGGAACAAGAAGCTGAGCGTATATACAAGGATGAGCGTGGATCGCTTCTTGATGATGAAGCTGCATCCACAAGAGATGCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0003674 GO:0005102 GO:0005198 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005642 GO:0005643 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006403 GO:0006405 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0008092 GO:0008104 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0008285 GO:0008289 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010648 GO:0010928 GO:0010930 GO:0010941 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016043 GO:0016070 GO:0017038 GO:0017056 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019894 GO:0019904 GO:0019953 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030159 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032182 GO:0032386 GO:0032501 GO:0032504 GO:0032774 GO:0032879 GO:0032880 GO:0032947 GO:0032991 GO:0033036 GO:0033157 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0035257 GO:0042127 GO:0042169 GO:0042175 GO:0042306 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043122 GO:0043123 GO:0043130 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044613 GO:0044703 GO:0045184 GO:0045893 GO:0045935 GO:0046483 GO:0046822 GO:0046907 GO:0046966 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051223 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051259 GO:0051291 GO:0051427 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0060341 GO:0060548 GO:0065003 GO:0065007 GO:0070013 GO:0070201 GO:0070206 GO:0070208 GO:0070727 GO:0071166 GO:0071426 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0098589 GO:0098805 GO:1900180 GO:1901360 GO:1901362 GO:1901576 GO:1902531 GO:1902533 GO:1902680 GO:1903506 GO:1903508 GO:1903827 GO:1904589 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nsp1_C Nucleoporin_FG

Protein Analysis

669

Amino Acids

65.47

Weight (kDa)

4.95

Isoelectric Point (pI)

59.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nsp1_C PF05064 551 - 654 5.6e-22 Nsp1-like C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45000
fragaria_vesca FvH4_7g10470 FvH4_7g10470 FvH4_7g10470
malus_domestica MD07G1110700.v1.1
prunus_persica Prupe.2G134200_v2.0.a1 Prupe.2G134200_v2.0.a1
pyrus_communis pycom07g09560
rosa_chinensis RchiOBHm_Chr1g0348261
rosa_laevigata RLG00000028672 RLG00000028676
rosa_roxburghii Rroxscaffold_4G00307070
rosa_rugosa Rorug01G0194000
rosa_samantha Rh1AG211000 Rh1BG177500 Rh1CG195400 Rh1DG207000
rosa_wichuraiana Rw1G017820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1414
Acc36I ACCTGC 1 cut(s) 1414
Acc65I GGTACC 2 cut(s) 248, 1556
AccB1I GGYRCC 4 cut(s) 248, 646, 1045, 1556
AccBSI CCGCTC 2 cut(s) 173, 1867
AccII CGCG 4 cut(s) 29, 119, 698, 1145
AclI AACGTT 1 cut(s) 1626
AcoI YGGCCR 1 cut(s) 951
AcsI RAATTY 1 cut(s) 1745
AcuI CTGAAG 2 cut(s) 1419, 1512
AcyI GRCGYC 2 cut(s) 647, 1046
AfaI GTAC 6 cut(s) 250, 571, 1243, 1558, 1564, 1738
AgsI TTSAA 8 cut(s) 13, 367, 1069, 1173, 1224, 1279, 1329, 1730
AhlI ACTAGT 2 cut(s) 1499, 1607
AjuI GAANNNNNNNTTGG 2 cut(s) 1654, 1686
Alw21I GWGCWC 5 cut(s) 737, 887, 935, 1313, 1591
Alw26I GTCTC 2 cut(s) 1523, 1880
Alw44I GTGCAC 1 cut(s) 1587
AlwNI CAGNNNCTG 5 cut(s) 436, 1007, 1340, 1355, 1535
Ama87I CYCGRG 2 cut(s) 994, 1820
AoxI GGCC 3 cut(s) 30, 951, 1438
ApaLI GTGCAC 1 cut(s) 1587
ApoI RAATTY 1 cut(s) 1745
Asp718I GGTACC 2 cut(s) 248, 1556
AspLEI GCGC 4 cut(s) 121, 460, 649, 1048
AsuC2I CCSGG 2 cut(s) 139, 468
AsuHPI GGTGA 2 cut(s) 79, 549
AvaI CYCGRG 2 cut(s) 994, 1820
BaeGI GKGCMC 2 cut(s) 1470, 1591
BaeI ACNNNNGTAYC 2 cut(s) 1629, 1662
BamHI GGATCC 5 cut(s) 20, 62, 110, 152, 311
BanI GGYRCC 4 cut(s) 248, 646, 1045, 1556
BanII GRGCYC 4 cut(s) 737, 833, 887, 935
BbsI GAAGAC 2 cut(s) 1170, 1694
Bbv12I GWGCWC 5 cut(s) 737, 887, 935, 1313, 1591
BccI CCATC 3 cut(s) 433, 487, 880
BceAI ACGGC 3 cut(s) 1059, 1230, 1347
BcgI CGANNNNNNTGC 2 cut(s) 957, 991
BcnI CCSGG 2 cut(s) 139, 468
BcoDI GTCTC 2 cut(s) 1523, 1880
BcuI ACTAGT 2 cut(s) 1499, 1607
BfaI CTAG 4 cut(s) 261, 1500, 1608, 1874
BfmI CTRYAG 7 cut(s) 744, 792, 840, 894, 942, 1569, 1641
BfoI RGCGCY 2 cut(s) 650, 1049
BfuAI ACCTGC 1 cut(s) 1414
BglI GCCNNNNNGGC 1 cut(s) 1148
BlpI GCTNAGC 4 cut(s) 613, 1348, 1722, 1938
BmcAI AGTACT 1 cut(s) 1243
Bme1390I CCNGG 2 cut(s) 139, 468
BmeT110I CYCGRG 2 cut(s) 994, 1820
BmrFI CCNGG 2 cut(s) 139, 468
BmrI ACTGGG 2 cut(s) 1692, 1786
BmsI GCATC 5 cut(s) 509, 854, 1034, 1990, 1997
BmuI ACTGGG 2 cut(s) 1692, 1786
BpiI GAAGAC 2 cut(s) 1170, 1694
BplI GAGNNNNNCTC 2 cut(s) 988, 1020
BpmI CTGGAG 1 cut(s) 802
Bpu10I CCTNAGC 1 cut(s) 1857
Bpu1102I GCTNAGC 4 cut(s) 613, 1348, 1722, 1938
BpuEI CTTGAG 1 cut(s) 754
BpuMI CCSGG 2 cut(s) 139, 468
BsaHI GRCGYC 2 cut(s) 647, 1046
BsaI GGTCTC 1 cut(s) 1523
BsaJI CCNNGG 4 cut(s) 27, 696, 1095, 1143
Bse1I ACTGG 6 cut(s) 1455, 1558, 1560, 1687, 1744, 1781
Bse3DI GCAATG 2 cut(s) 1132, 2010
BseDI CCNNGG 4 cut(s) 27, 696, 1095, 1143
BseGI GGATG 9 cut(s) 218, 446, 479, 629, 872, 1025, 1091, 1960, 1988
BseMI GCAATG 2 cut(s) 1132, 2010
BseMII CTCAG 8 cut(s) 443, 627, 680, 1362, 1476, 1665, 1713, 1929
BseNI ACTGG 6 cut(s) 1455, 1558, 1560, 1687, 1744, 1781
BseSI GKGCMC 2 cut(s) 1470, 1591
BseYI CCCAGC 1 cut(s) 602
BsgI GTGCAG 1 cut(s) 1302
Bsh1236I CGCG 4 cut(s) 29, 119, 698, 1145
BshFI GGCC 3 cut(s) 32, 953, 1440
BshNI GGYRCC 4 cut(s) 248, 646, 1045, 1556
BsiHKAI GWGCWC 5 cut(s) 737, 887, 935, 1313, 1591
BsiHKCI CYCGRG 2 cut(s) 994, 1820
BsiSI CCGG 5 cut(s) 138, 467, 516, 950, 1229
BslFI GGGAC 3 cut(s) 418, 1627, 1793
BsmAI GTCTC 2 cut(s) 1523, 1880
BsmFI GGGAC 3 cut(s) 418, 1627, 1793
BsmI GAATGC 4 cut(s) 764, 812, 866, 1723
BsnI GGCC 3 cut(s) 32, 953, 1440
Bso31I GGTCTC 1 cut(s) 1523
BsoBI CYCGRG 2 cut(s) 994, 1820
Bsp1286I GDGCHC 7 cut(s) 737, 833, 887, 935, 1313, 1470, 1591
Bsp143I GATC 8 cut(s) 20, 62, 110, 152, 311, 1677, 1824, 1964
Bsp1720I GCTNAGC 4 cut(s) 613, 1348, 1722, 1938
BspANI GGCC 3 cut(s) 32, 953, 1440
BspCNI CTCAG 8 cut(s) 442, 626, 679, 1361, 1475, 1666, 1714, 1930
BspFNI CGCG 4 cut(s) 29, 119, 698, 1145
BspMAI CTGCAG 6 cut(s) 748, 796, 844, 898, 946, 1573
BspMI ACCTGC 1 cut(s) 1414
BspQI GCTCTTC 5 cut(s) 742, 838, 892, 940, 979
BspT107I GGYRCC 4 cut(s) 248, 646, 1045, 1556
BspTNI GGTCTC 1 cut(s) 1523
BsrBI CCGCTC 2 cut(s) 173, 1867
BsrDI GCAATG 2 cut(s) 1132, 2010
BsrI ACTGG 6 cut(s) 1455, 1558, 1560, 1687, 1744, 1781
BssECI CCNNGG 4 cut(s) 27, 696, 1095, 1143
BssMI GATC 8 cut(s) 20, 62, 110, 152, 311, 1677, 1824, 1964
BssNI GRCGYC 2 cut(s) 647, 1046
Bst4CI ACNGT 4 cut(s) 1201, 1645, 1693, 1802
Bst6I CTCTTC 8 cut(s) 110, 640, 742, 790, 838, 892, 940, 979
BstACI GRCGYC 2 cut(s) 647, 1046
BstAPI GCANNNNNTGC 1 cut(s) 1340
BstDSI CCRYGG 3 cut(s) 27, 696, 1143
BstENI CCTNNNNNAGG 1 cut(s) 918
BstF5I GGATG 9 cut(s) 218, 446, 479, 629, 872, 1025, 1091, 1960, 1988
BstFNI CGCG 4 cut(s) 29, 119, 698, 1145
BstH2I RGCGCY 2 cut(s) 650, 1049
BstHHI GCGC 4 cut(s) 121, 460, 649, 1048
BstKTI GATC 8 cut(s) 23, 65, 113, 155, 314, 1680, 1827, 1967
BstMAI GTCTC 2 cut(s) 1523, 1880
BstMBI GATC 8 cut(s) 20, 62, 110, 152, 311, 1677, 1824, 1964
BstSCI CCNGG 2 cut(s) 137, 466
BstSFI CTRYAG 7 cut(s) 744, 792, 840, 894, 942, 1569, 1641
BstSLI GKGCMC 2 cut(s) 1470, 1591
BstUI CGCG 4 cut(s) 29, 119, 698, 1145
BstV2I GAAGAC 2 cut(s) 1170, 1694
BstX2I RGATCY 5 cut(s) 20, 62, 110, 152, 311
BstXI CCANNNNNNTGG 1 cut(s) 826
BstYI RGATCY 5 cut(s) 20, 62, 110, 152, 311
BsuRI GGCC 3 cut(s) 32, 953, 1440
BtgI CCRYGG 3 cut(s) 27, 696, 1143
BtgZI GCGATG 1 cut(s) 1167
BtsCI GGATG 9 cut(s) 218, 446, 479, 629, 872, 1025, 1091, 1960, 1988
BtsI GCAGTG 2 cut(s) 1314, 1341
BtsIMutI CAGTG 6 cut(s) 1314, 1319, 1341, 1462, 1470, 1680
BveI ACCTGC 1 cut(s) 1414
CaiI CAGNNNCTG 5 cut(s) 436, 1007, 1340, 1355, 1535
CfoI GCGC 4 cut(s) 121, 460, 649, 1048
Cfr42I CCGCGG 3 cut(s) 30, 699, 1146
Csp6I GTAC 6 cut(s) 249, 570, 1242, 1557, 1563, 1737
CviAII CATG 1 cut(s) 1924
CviQI GTAC 6 cut(s) 249, 570, 1242, 1557, 1563, 1737
DinI GGCGCC 2 cut(s) 648, 1047
DpnI GATC 8 cut(s) 22, 64, 112, 154, 313, 1679, 1826, 1966
DpnII GATC 8 cut(s) 20, 62, 110, 152, 311, 1677, 1824, 1964
EaeI YGGCCR 1 cut(s) 951
Eam1104I CTCTTC 8 cut(s) 110, 640, 742, 790, 838, 892, 940, 979
EarI CTCTTC 8 cut(s) 110, 640, 742, 790, 838, 892, 940, 979
EciI GGCGGA 1 cut(s) 226
Ecl136II GAGCTC 3 cut(s) 735, 885, 933
Eco147I AGGCCT 1 cut(s) 1440
Eco24I GRGCYC 4 cut(s) 737, 833, 887, 935
Eco31I GGTCTC 1 cut(s) 1523
Eco53kI GAGCTC 3 cut(s) 735, 885, 933
Eco57I CTGAAG 2 cut(s) 1419, 1512
Eco88I CYCGRG 2 cut(s) 994, 1820
EcoICRI GAGCTC 3 cut(s) 735, 885, 933
EcoNI CCTNNNNNAGG 1 cut(s) 918
EcoT38I GRGCYC 4 cut(s) 737, 833, 887, 935
EgeI GGCGCC 2 cut(s) 648, 1047
EheI GGCGCC 2 cut(s) 648, 1047
FaeI CATG 1 cut(s) 1927
FaiI YATR 5 cut(s) 410, 1400, 1925, 1946, 1948
FaqI GGGAC 3 cut(s) 418, 1627, 1793
FatI CATG 1 cut(s) 1923
FauI CCCGC 6 cut(s) 130, 274, 769, 871, 1477, 1516
FokI GGATG 9 cut(s) 205, 433, 466, 616, 859, 1012, 1078, 1967, 1975
FriOI GRGCYC 4 cut(s) 737, 833, 887, 935
FspBI CTAG 4 cut(s) 261, 1500, 1608, 1874
GlaI GCGC 4 cut(s) 120, 459, 648, 1047
GsaI CCCAGC 1 cut(s) 606
GsuI CTGGAG 1 cut(s) 802
HaeII RGCGCY 2 cut(s) 650, 1049
HaeIII GGCC 3 cut(s) 32, 953, 1440
HapII CCGG 5 cut(s) 138, 467, 516, 950, 1229
HhaI GCGC 4 cut(s) 121, 460, 649, 1048
Hin1I GRCGYC 2 cut(s) 647, 1046
Hin1II CATG 1 cut(s) 1927
Hin6I GCGC 4 cut(s) 119, 458, 647, 1046
HinP1I GCGC 4 cut(s) 119, 458, 647, 1046
HincII GTYRAC 1 cut(s) 495
HindII GTYRAC 1 cut(s) 495
HindIII AAGCTT 2 cut(s) 724, 772
HinfI GANTC 6 cut(s) 147, 306, 363, 1119, 1285, 1888
HpaII CCGG 5 cut(s) 138, 467, 516, 950, 1229
HphI GGTGA 2 cut(s) 79, 549
Hpy166II GTNNAC 2 cut(s) 495, 1589
Hpy188III TCNNGA 5 cut(s) 994, 1204, 1730, 1822, 1973
Hpy8I GTNNAC 2 cut(s) 495, 1589
Hpy99I CGWCG 4 cut(s) 403, 1201, 1378, 1552
HpyAV CCTTC 5 cut(s) 108, 363, 1059, 1119, 1680
HpyCH4III ACNGT 4 cut(s) 1201, 1645, 1693, 1802
HpyCH4IV ACGT 1 cut(s) 1626
HpySE526I ACGT 1 cut(s) 1626
Hsp92I GRCGYC 2 cut(s) 647, 1046
Hsp92II CATG 1 cut(s) 1927
HspAI GCGC 4 cut(s) 119, 458, 647, 1046
KasI GGCGCC 2 cut(s) 646, 1045
KpnI GGTACC 2 cut(s) 252, 1560
KspI CCGCGG 3 cut(s) 30, 699, 1146
Kzo9I GATC 8 cut(s) 20, 62, 110, 152, 311, 1677, 1824, 1964
LguI GCTCTTC 5 cut(s) 742, 838, 892, 940, 979
LweI GCATC 5 cut(s) 509, 854, 1034, 1990, 1997
MaeI CTAG 4 cut(s) 261, 1500, 1608, 1874
MaeII ACGT 1 cut(s) 1626
MaeIII GTNAC 1 cut(s) 1201
MalI GATC 8 cut(s) 22, 64, 112, 154, 313, 1679, 1826, 1966
MbiI CCGCTC 2 cut(s) 173, 1867
MboI GATC 8 cut(s) 20, 62, 110, 152, 311, 1677, 1824, 1964
MflI RGATCY 5 cut(s) 20, 62, 110, 152, 311
MhlI GDGCHC 7 cut(s) 737, 833, 887, 935, 1313, 1470, 1591
MluCI AATT 4 cut(s) 13, 1664, 1745, 1881
Mly113I GGCGCC 2 cut(s) 647, 1046
MlyI GAGTC 4 cut(s) 141, 315, 1279, 1882
MmeI TCCRAC 4 cut(s) 246, 289, 728, 1601
MseI TTAA 2 cut(s) 1629, 1880
MspA1I CMGCKG 6 cut(s) 29, 380, 698, 893, 1145, 1352
MspI CCGG 5 cut(s) 138, 467, 516, 950, 1229
MspR9I CCNGG 2 cut(s) 139, 468
Mva1269I GAATGC 4 cut(s) 764, 812, 866, 1723
MvnI CGCG 4 cut(s) 29, 119, 698, 1145
NarI GGCGCC 2 cut(s) 647, 1046
NciI CCSGG 2 cut(s) 139, 468
NdeII GATC 8 cut(s) 20, 62, 110, 152, 311, 1677, 1824, 1964
NlaIII CATG 1 cut(s) 1927
NmeAIII GCCGAG 2 cut(s) 521, 1076
NmuCI GTSAC 1 cut(s) 1201
PaeR7I CTCGAG 1 cut(s) 1820
PaqCI CACCTGC 1 cut(s) 1414
PceI AGGCCT 1 cut(s) 1440
PciSI GCTCTTC 5 cut(s) 742, 838, 892, 940, 979
PcsI WCGNNNNNNNCGW 1 cut(s) 1202
PctI GAATGC 4 cut(s) 764, 812, 866, 1723
PfeI GAWTC 2 cut(s) 363, 1119
PleI GAGTC 4 cut(s) 141, 314, 1279, 1882
PluTI GGCGCC 2 cut(s) 650, 1049
PpsI GAGTC 4 cut(s) 141, 314, 1279, 1882
Psp124BI GAGCTC 3 cut(s) 737, 887, 935
Psp1406I AACGTT 1 cut(s) 1626
PspFI CCCAGC 1 cut(s) 602
PstI CTGCAG 6 cut(s) 748, 796, 844, 898, 946, 1573
PstNI CAGNNNCTG 5 cut(s) 436, 1007, 1340, 1355, 1535
PsuI RGATCY 5 cut(s) 20, 62, 110, 152, 311
PvuII CAGCTG 1 cut(s) 1352
RsaI GTAC 6 cut(s) 250, 571, 1243, 1558, 1564, 1738
RsaNI GTAC 6 cut(s) 249, 570, 1242, 1557, 1563, 1737
SacI GAGCTC 3 cut(s) 737, 887, 935
SacII CCGCGG 3 cut(s) 30, 699, 1146
SapI GCTCTTC 5 cut(s) 742, 838, 892, 940, 979
SaqAI TTAA 2 cut(s) 1629, 1880
Sau3AI GATC 8 cut(s) 20, 62, 110, 152, 311, 1677, 1824, 1964
ScaI AGTACT 1 cut(s) 1243
SchI GAGTC 4 cut(s) 141, 315, 1279, 1882
ScrFI CCNGG 2 cut(s) 139, 468
SduI GDGCHC 7 cut(s) 737, 833, 887, 935, 1313, 1470, 1591
SfaNI GCATC 5 cut(s) 509, 854, 1034, 1990, 1997
SfcI CTRYAG 7 cut(s) 744, 792, 840, 894, 942, 1569, 1641
SfoI GGCGCC 2 cut(s) 648, 1047
Sfr274I CTCGAG 1 cut(s) 1820
Sfr303I CCGCGG 3 cut(s) 30, 699, 1146
SgrBI CCGCGG 3 cut(s) 30, 699, 1146
SlaI CTCGAG 1 cut(s) 1820
SmlI CTYRAG 2 cut(s) 769, 1820
SmoI CTYRAG 2 cut(s) 769, 1820
SpeI ACTAGT 2 cut(s) 1499, 1607
Sse9I AATT 4 cut(s) 13, 1664, 1745, 1881
SseBI AGGCCT 1 cut(s) 1440
SspDI GGCGCC 2 cut(s) 646, 1045
SspMI CTAG 4 cut(s) 261, 1500, 1608, 1874
SstI GAGCTC 3 cut(s) 737, 887, 935
StuI AGGCCT 1 cut(s) 1440
StyD4I CCNGG 2 cut(s) 137, 466
TaaI ACNGT 4 cut(s) 1201, 1645, 1693, 1802
TaiI ACGT 1 cut(s) 1629
TaqI TCGA 6 cut(s) 731, 881, 1196, 1821, 1827, 1905
TasI AATT 4 cut(s) 13, 1664, 1745, 1881
TatI WGTACW 1 cut(s) 1241
TfiI GAWTC 2 cut(s) 363, 1119
Tru1I TTAA 2 cut(s) 1629, 1880
Tru9I TTAA 2 cut(s) 1629, 1880
TscAI CASTG 6 cut(s) 1321, 1326, 1341, 1462, 1470, 1687
TseFI GTSAC 1 cut(s) 1201
Tsp45I GTSAC 1 cut(s) 1201
TspDTI ATGAA 8 cut(s) 345, 627, 1041, 1170, 1350, 1371, 1434, 1995
TspGWI ACGGA 1 cut(s) 387
TspRI CASTG 6 cut(s) 1321, 1326, 1341, 1462, 1470, 1687
VneI GTGCAC 1 cut(s) 1587
XagI CCTNNNNNAGG 1 cut(s) 918
XapI RAATTY 1 cut(s) 1745
XhoI CTCGAG 1 cut(s) 1820
XspI CTAG 4 cut(s) 261, 1500, 1608, 1874
ZrmI AGTACT 1 cut(s) 1243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.