Rh2AG169100

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0013773
Physical Location & Seq
Forward (+)
16021029 .. 16024052
3024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG169100.1

Sequence Viewer

Length: 276 bp
ATGGACAACCTTGTTGCAGGGGGTGCTATGGGCGTACCTTTTAATGCCCTCTATGACGTCATTAAGGAAGTGGTGGTCAAGACTAAGATGTTTAAACCTCTCCTTGAAGATCTTGACTCAACGATAAATTCTTTGAAACCACTGATCGATGAGATGAAAAAGTGCAATAAGTCCGTGGCTCTTGGCCAATTGAGCAAGGAATCGAAGAAAGAACCTGCTCATCATCAATCCCTTTTGGTCAATACATATTGGAAAGATGATCATGTTAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

91

Amino Acids

10.2

Weight (kDa)

6.82

Isoelectric Point (pI)

29.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 3 - 60 1.1e-12 Arabidopsis broad-spectrum mildew resistance protein RPW8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
Acc36I ACCTGC 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 1 cut(s) 127
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 36
AgsI TTSAA 2 cut(s) 107, 136
AoxI GGCC 1 cut(s) 184
ApoI RAATTY 1 cut(s) 127
BalI TGGCCA 1 cut(s) 186
BclI TGATCA 1 cut(s) 259
BfuAI ACCTGC 1 cut(s) 223
BglII AGATCT 1 cut(s) 109
Bsa29I ATCGAT 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 174
BseCI ATCGAT 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 174
BshFI GGCC 1 cut(s) 186
BshVI ATCGAT 1 cut(s) 147
BsnI GGCC 1 cut(s) 186
Bsp143I GATC 3 cut(s) 109, 144, 259
BspANI GGCC 1 cut(s) 186
BspDI ATCGAT 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 3 cut(s) 109, 144, 259
BssNI GRCGYC 1 cut(s) 57
BstACI GRCGYC 1 cut(s) 57
BstAPI GCANNNNNTGC 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 84
BstDSI CCRYGG 1 cut(s) 174
BstKTI GATC 3 cut(s) 112, 147, 262
BstMBI GATC 3 cut(s) 109, 144, 259
BstMWI GCNNNNNNNGC 2 cut(s) 23, 192
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
Bsu15I ATCGAT 1 cut(s) 147
BsuRI GGCC 1 cut(s) 186
BsuTUI ATCGAT 1 cut(s) 147
BtgI CCRYGG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 140
BveI ACCTGC 1 cut(s) 223
ClaI ATCGAT 1 cut(s) 147
Csp6I GTAC 1 cut(s) 35
CviAII CATG 1 cut(s) 263
CviJI RGCY 2 cut(s) 179, 186
CviKI_1 RGCY 2 cut(s) 179, 186
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 1 cut(s) 84
DpnI GATC 3 cut(s) 111, 146, 261
DpnII GATC 3 cut(s) 109, 144, 259
DraI TTTAAA 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 184
FaeI CATG 1 cut(s) 266
FaiI YATR 4 cut(s) 29, 54, 247, 264
FatI CATG 1 cut(s) 262
FbaI TGATCA 1 cut(s) 259
HaeIII GGCC 1 cut(s) 186
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 1 cut(s) 266
HinfI GANTC 2 cut(s) 116, 200
Hpy188III TCNNGA 2 cut(s) 79, 113
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 2 cut(s) 17, 165
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 192
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 1 cut(s) 266
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 3 cut(s) 109, 144, 259
LpnPI CCDG 2 cut(s) 3, 228
MaeII ACGT 1 cut(s) 57
MalI GATC 3 cut(s) 111, 146, 261
MboI GATC 3 cut(s) 109, 144, 259
MboII GAAGA 2 cut(s) 119, 217
MfeI CAATTG 1 cut(s) 188
MflI RGATCY 1 cut(s) 109
MlsI TGGCCA 1 cut(s) 186
MluCI AATT 2 cut(s) 127, 188
MluNI TGGCCA 1 cut(s) 186
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 2 cut(s) 59, 108
Mox20I TGGCCA 1 cut(s) 186
MscI TGGCCA 1 cut(s) 186
MseI TTAA 5 cut(s) 42, 63, 93, 267, 274
Msp20I TGGCCA 1 cut(s) 186
MssI GTTTAAAC 1 cut(s) 94
MunI CAATTG 1 cut(s) 188
MwoI GCNNNNNNNGC 2 cut(s) 23, 192
NdeII GATC 3 cut(s) 109, 144, 259
NlaIII CATG 1 cut(s) 266
PfeI GAWTC 1 cut(s) 200
PleI GAGTC 1 cut(s) 110
PmeI GTTTAAAC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 110
PsuI RGATCY 1 cut(s) 109
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SaqAI TTAA 5 cut(s) 42, 63, 93, 267, 274
Sau3AI GATC 3 cut(s) 109, 144, 259
SchI GAGTC 1 cut(s) 110
SetI ASST 5 cut(s) 12, 40, 60, 100, 217
SgeI CNNG 9 cut(s) 23, 30, 91, 116, 125, 187, 194, 208, 227
Sse9I AATT 2 cut(s) 127, 188
TaiI ACGT 1 cut(s) 60
TaqI TCGA 2 cut(s) 147, 203
TasI AATT 2 cut(s) 127, 188
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 5 cut(s) 42, 63, 93, 267, 274
Tru9I TTAA 5 cut(s) 42, 63, 93, 267, 274
TscAI CASTG 1 cut(s) 147
TspDTI ATGAA 1 cut(s) 170
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 1 cut(s) 147
XapI RAATTY 1 cut(s) 127
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.