Rh2CG174800

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013773
Physical Location & Seq
Forward (+)
15779940 .. 15782117
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG174800.1

Sequence Viewer

Length: 391 bp
ATGGACCAATTTGGCCTGATCAAGAGCACGGTGCTGAAGACAATGCTGTGGTGGGTTTTGTTTATTGTTCGAGAGATATCACCAATCACAGAGTTTCTAATTTTGTCTGGTCACCAATATAGAGGTTGTTGTAAAGAATCAAGAATGGCGGCGAACCTCGCTGCAGGTGGTGCTATGGGAGTACCATTTAATGCGCTCTATGAAGCCATTAAGCAAGTGGTGGTCAAGACTAGAATGTTTAAACCCCTTGTTGAAGACCTGAGGAATATAGAGACGGTGGTGCAGCGGGTGGATGTGAATGTTGCGGCATTGAGACAACACCAAGAGATGAATGTTACGAATCAATTAAGAAGCATAAGCAGTACCGCGATCCAGCATATTGAAAACCAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

130

Amino Acids

14.75

Weight (kDa)

9.1

Isoelectric Point (pI)

43.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 155
Acc36I ACCTGC 1 cut(s) 155
AccII CGCG 1 cut(s) 368
AciI CCGC 4 cut(s) 149, 286, 305, 366
AclWI GGATC 1 cut(s) 364
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 2 cut(s) 183, 364
AgsI TTSAA 2 cut(s) 254, 383
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 2 cut(s) 266, 307
AlwI GGATC 1 cut(s) 364
AoxI GGCC 1 cut(s) 13
ApeKI GCWGC 2 cut(s) 161, 283
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 72, 104
AvaII GGWCC 1 cut(s) 4
AxyI CCTNAGG 1 cut(s) 260
BbsI GAAGAC 2 cut(s) 44, 261
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 2 cut(s) 148, 295
BclI TGATCA 1 cut(s) 18
BcoDI GTCTC 2 cut(s) 266, 307
BfaI CTAG 1 cut(s) 231
BfmI CTRYAG 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 155
BisI GCNGC 4 cut(s) 150, 162, 284, 306
BlsI GCNGC 4 cut(s) 151, 163, 285, 307
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BpiI GAAGAC 2 cut(s) 44, 261
Bse21I CCTNAGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 298
BseMII CTCAG 1 cut(s) 251
BseXI GCAGC 2 cut(s) 148, 295
BsgI GTGCAG 1 cut(s) 302
Bsh1236I CGCG 1 cut(s) 368
BshFI GGCC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 29
BsmAI GTCTC 2 cut(s) 266, 307
BsmBI CGTCTC 1 cut(s) 266
BsnI GGCC 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 2 cut(s) 18, 369
BspACI CCGC 4 cut(s) 149, 286, 305, 366
BspANI GGCC 1 cut(s) 15
BspCNI CTCAG 1 cut(s) 252
BspFNI CGCG 1 cut(s) 368
BspMAI CTGCAG 1 cut(s) 166
BspMI ACCTGC 1 cut(s) 155
BspPI GGATC 1 cut(s) 364
BssMI GATC 2 cut(s) 18, 369
Bst4CI ACNGT 2 cut(s) 31, 277
BstAPI GCANNNNNTGC 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 260
BstEII GGTNACC 1 cut(s) 110
BstF5I GGATG 1 cut(s) 298
BstFNI CGCG 1 cut(s) 368
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 2 cut(s) 21, 372
BstMAI GTCTC 2 cut(s) 266, 307
BstMBI GATC 2 cut(s) 18, 369
BstMWI GCNNNNNNNGC 2 cut(s) 158, 170
BstPI GGTNACC 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 162
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 2 cut(s) 148, 295
BstV2I GAAGAC 2 cut(s) 44, 261
Bsu36I CCTNAGG 1 cut(s) 260
BsuRI GGCC 1 cut(s) 15
BtsCI GGATG 1 cut(s) 298
BveI ACCTGC 1 cut(s) 155
CfoI GCGC 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 182, 363
CviJI RGCY 2 cut(s) 15, 206
CviKI_1 RGCY 2 cut(s) 15, 206
CviQI GTAC 2 cut(s) 182, 363
DdeI CTNAG 1 cut(s) 260
DpnI GATC 2 cut(s) 20, 371
DpnII GATC 2 cut(s) 18, 369
DraI TTTAAA 1 cut(s) 241
Eco32I GATATC 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 56
Eco81I CCTNAGG 1 cut(s) 260
Eco91I GGTNACC 1 cut(s) 110
EcoO65I GGTNACC 1 cut(s) 110
EcoRV GATATC 1 cut(s) 78
Esp3I CGTCTC 1 cut(s) 266
FaiI YATR 6 cut(s) 120, 176, 201, 269, 356, 378
FauI CCCGC 1 cut(s) 279
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 4 cut(s) 150, 162, 284, 306
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 4 cut(s) 150, 162, 284, 306
FspBI CTAG 1 cut(s) 231
GlaI GCGC 1 cut(s) 195
GluI GCNGC 4 cut(s) 150, 162, 284, 306
HaeIII GGCC 1 cut(s) 15
HhaI GCGC 1 cut(s) 196
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HinfI GANTC 2 cut(s) 137, 340
HphI GGTGA 2 cut(s) 72, 104
Hpy188III TCNNGA 4 cut(s) 22, 71, 141, 226
HpyCH4III ACNGT 2 cut(s) 31, 277
HpyCH4V TGCA 2 cut(s) 164, 283
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 170
HpyF3I CTNAG 1 cut(s) 260
HspAI GCGC 1 cut(s) 194
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 2 cut(s) 18, 369
LpnPI CCDG 5 cut(s) 29, 93, 150, 272, 386
Lsp1109I GCAGC 2 cut(s) 148, 295
MaeI CTAG 1 cut(s) 231
MaeIII GTNAC 2 cut(s) 110, 334
MalI GATC 2 cut(s) 20, 371
MboI GATC 2 cut(s) 18, 369
MboII GAAGA 2 cut(s) 49, 266
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 3 cut(s) 8, 99, 344
MnlI CCTC 3 cut(s) 116, 167, 255
MseI TTAA 4 cut(s) 189, 210, 240, 347
MspA1I CMGCKG 1 cut(s) 286
MssI GTTTAAAC 1 cut(s) 241
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 158, 170
NdeII GATC 2 cut(s) 18, 369
NmuCI GTSAC 1 cut(s) 110
PaqCI CACCTGC 1 cut(s) 155
PfeI GAWTC 2 cut(s) 137, 340
PkrI GCNGC 4 cut(s) 151, 163, 285, 307
PmeI GTTTAAAC 1 cut(s) 241
PspEI GGTNACC 1 cut(s) 110
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 166
RsaI GTAC 2 cut(s) 183, 364
RsaNI GTAC 2 cut(s) 182, 363
SaqAI TTAA 4 cut(s) 189, 210, 240, 347
SatI GCNGC 4 cut(s) 150, 162, 284, 306
Sau3AI GATC 2 cut(s) 18, 369
Sau96I GGNCC 1 cut(s) 4
SduI GDGCHC 1 cut(s) 29
SetI ASST 4 cut(s) 127, 159, 169, 261
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 4
Sse9I AATT 3 cut(s) 8, 99, 344
SsiI CCGC 4 cut(s) 149, 286, 305, 366
SspMI CTAG 1 cut(s) 231
TaaI ACNGT 2 cut(s) 31, 277
TaqI TCGA 1 cut(s) 70
TasI AATT 3 cut(s) 8, 99, 344
TauI GCSGC 2 cut(s) 152, 308
TfiI GAWTC 2 cut(s) 137, 340
Tru1I TTAA 4 cut(s) 189, 210, 240, 347
Tru9I TTAA 4 cut(s) 189, 210, 240, 347
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 2 cut(s) 161, 283
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 216, 344
VpaK11BI GGWCC 1 cut(s) 4
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.