E3 ubiquitin-protein ligase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G02310 AT5G02310 AT5G02310 |
| fragaria_vesca | FvH4_6g13660 FvH4_6g13660 FvH4_6g13660 FvH4_6g13660 FvH4_6g13660 |
| malus_domestica | MD04G1129300.v1.1 MD12G1142100.v1.1 |
| prunus_persica | Prupe.6G255500_v2.0.a1 Prupe.6G255500_v2.0.a1 Prupe.6G255500_v2.0.a1 |
| pyrus_communis | pycom04g11750 pycom12g13690 |
| rosa_chinensis | RchiOBHm_Chr3g0466531 |
| rosa_laevigata | RLG00000024565 |
| rosa_multiflora | Rmu_sc0003332.1_g000005 |
| rosa_roxburghii | Rroxscaffold_6G00414400 |
| rosa_rugosa | Rorug03G0082300 |
| rosa_samantha | Rh3AG129300 Rh3BG150600 Rh3CG150400 Rh3DG151300 |
| rosa_wichuraiana | Rw3G012220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1203 |
| Acc36I | ACCTGC | 3 cut(s) | 3370, 5956, 5994 |
| AccB1I | GGYRCC | 1 cut(s) | 1063 |
| AccBSI | CCGCTC | 1 cut(s) | 5471 |
| AccI | GTMKAC | 4 cut(s) | 5, 3759, 4555, 5830 |
| AccII | CGCG | 4 cut(s) | 154, 207, 267, 3052 |
| AclI | AACGTT | 1 cut(s) | 1123 |
| AcoI | YGGCCR | 3 cut(s) | 349, 1162, 2072 |
| AcvI | CACGTG | 2 cut(s) | 5046, 5639 |
| AcyI | GRCGYC | 2 cut(s) | 243, 1200 |
| AfeI | AGCGCT | 2 cut(s) | 2498, 2537 |
| AflII | CTTAAG | 2 cut(s) | 4060, 5744 |
| AflIII | ACRYGT | 3 cut(s) | 4642, 5043, 5179 |
| AhlI | ACTAGT | 2 cut(s) | 4649, 5645 |
| AjiI | CACGTC | 2 cut(s) | 4772, 4808 |
| AjnI | CCWGG | 9 cut(s) | 217, 310, 543, 1554, 2927, 4666, 4698, 5328, 5883 |
| AleI | CACNNNNGTG | 2 cut(s) | 2271, 5669 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1855, 1887 |
| Alw21I | GWGCWC | 3 cut(s) | 4787, 5337, 5688 |
| Alw26I | GTCTC | 5 cut(s) | 2706, 3481, 3855, 4000, 4118 |
| Alw44I | GTGCAC | 1 cut(s) | 5333 |
| AlwNI | CAGNNNCTG | 7 cut(s) | 2192, 2759, 3452, 3575, 3986, 4217, 4859 |
| Ama87I | CYCGRG | 4 cut(s) | 69, 1720, 4999, 5874 |
| Aor51HI | AGCGCT | 2 cut(s) | 2498, 2537 |
| ApaLI | GTGCAC | 1 cut(s) | 5333 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 330, 362, 620, 652 |
| AseI | ATTAAT | 2 cut(s) | 1949, 3195 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1224, 2556, 2652, 4681 |
| AspA2I | CCTAGG | 1 cut(s) | 4010 |
| AspLEI | GCGC | 3 cut(s) | 2499, 2538, 3058 |
| AspS9I | GGNCC | 7 cut(s) | 328, 617, 2027, 3067, 3728, 4340, 4382 |
| AsuC2I | CCSGG | 1 cut(s) | 683 |
| AsuII | TTCGAA | 1 cut(s) | 3269 |
| AvaI | CYCGRG | 4 cut(s) | 69, 1720, 4999, 5874 |
| AvaII | GGWCC | 3 cut(s) | 2027, 3067, 3728 |
| AvrII | CCTAGG | 1 cut(s) | 4010 |
| AxyI | CCTNAGG | 1 cut(s) | 3439 |
| BaeGI | GKGCMC | 1 cut(s) | 5337 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2875, 2908, 4614, 4647 |
| BalI | TGGCCA | 1 cut(s) | 2074 |
| BamHI | GGATCC | 2 cut(s) | 1997, 5465 |
| BanI | GGYRCC | 1 cut(s) | 1063 |
| BanII | GRGCYC | 2 cut(s) | 4787, 5688 |
| BauI | CACGAG | 5 cut(s) | 42, 277, 896, 2709, 5247 |
| BbrPI | CACGTG | 2 cut(s) | 5046, 5639 |
| BbsI | GAAGAC | 5 cut(s) | 1164, 1482, 1860, 4452, 5279 |
| Bbv12I | GWGCWC | 3 cut(s) | 4787, 5337, 5688 |
| BbvCI | CCTCAGC | 1 cut(s) | 2328 |
| BceAI | ACGGC | 4 cut(s) | 1149, 1177, 1562, 4536 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 1587, 1621, 2288, 2322, 5573, 5607, 5900, 5934 |
| BciT130I | CCWGG | 9 cut(s) | 219, 312, 545, 1556, 2929, 4668, 4700, 5330, 5885 |
| BciVI | GTATCC | 3 cut(s) | 1035, 1638, 4615 |
| BclI | TGATCA | 1 cut(s) | 3799 |
| BcnI | CCSGG | 1 cut(s) | 683 |
| BcoDI | GTCTC | 5 cut(s) | 2706, 3481, 3855, 4000, 4118 |
| BcuI | ACTAGT | 2 cut(s) | 4649, 5645 |
| BfmI | CTRYAG | 8 cut(s) | 711, 2150, 2871, 3377, 4386, 4716, 4963, 6001 |
| BfoI | RGCGCY | 3 cut(s) | 2500, 2539, 3059 |
| BfrI | CTTAAG | 2 cut(s) | 4060, 5744 |
| BfuAI | ACCTGC | 3 cut(s) | 3370, 5956, 5994 |
| BfuI | GTATCC | 3 cut(s) | 1035, 1638, 4615 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 357 |
| BlnI | CCTAGG | 1 cut(s) | 4010 |
| BlpI | GCTNAGC | 1 cut(s) | 797 |
| BmcAI | AGTACT | 4 cut(s) | 1753, 4108, 4324, 4904 |
| Bme18I | GGWCC | 3 cut(s) | 2027, 3067, 3728 |
| BmeT110I | CYCGRG | 4 cut(s) | 69, 1720, 4999, 5874 |
| BmgBI | CACGTC | 2 cut(s) | 4772, 4808 |
| BmgT120I | GGNCC | 7 cut(s) | 328, 617, 2027, 3067, 3728, 4340, 4382 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1549 |
| BpiI | GAAGAC | 5 cut(s) | 1164, 1482, 1860, 4452, 5279 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 52, 84, 260, 292 |
| BpmI | CTGGAG | 1 cut(s) | 2448 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2328, 5410 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 797 |
| Bpu14I | TTCGAA | 1 cut(s) | 3269 |
| BpuEI | CTTGAG | 5 cut(s) | 269, 308, 2552, 2839, 5702 |
| BpuMI | CCSGG | 1 cut(s) | 683 |
| Bsa29I | ATCGAT | 3 cut(s) | 18, 1968, 5296 |
| BsaAI | YACGTR | 4 cut(s) | 5046, 5109, 5639, 6043 |
| BsaBI | GATNNNNATC | 1 cut(s) | 5302 |
| BsaHI | GRCGYC | 2 cut(s) | 243, 1200 |
| BsaI | GGTCTC | 1 cut(s) | 4000 |
| BsaWI | WCCGGW | 1 cut(s) | 2000 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 160, 190 |
| Bse118I | RCCGGY | 2 cut(s) | 239, 497 |
| Bse21I | CCTNAGG | 1 cut(s) | 3439 |
| Bse3DI | GCAATG | 3 cut(s) | 2019, 3080, 5661 |
| Bse8I | GATNNNNATC | 1 cut(s) | 5302 |
| BseBI | CCWGG | 9 cut(s) | 219, 312, 545, 1556, 2929, 4668, 4700, 5330, 5885 |
| BseCI | ATCGAT | 3 cut(s) | 18, 1968, 5296 |
| BseJI | GATNNNNATC | 1 cut(s) | 5302 |
| BseMI | GCAATG | 3 cut(s) | 2019, 3080, 5661 |
| BseRI | GAGGAG | 2 cut(s) | 611, 2837 |
| BseSI | GKGCMC | 1 cut(s) | 5337 |
| BseX3I | CGGCCG | 1 cut(s) | 1162 |
| BseYI | CCCAGC | 2 cut(s) | 1702, 4730 |
| BsgI | GTGCAG | 6 cut(s) | 591, 802, 1596, 2585, 3609, 5934 |
| Bsh1236I | CGCG | 4 cut(s) | 154, 207, 267, 3052 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1165 |
| BshNI | GGYRCC | 1 cut(s) | 1063 |
| BshVI | ATCGAT | 3 cut(s) | 18, 1968, 5296 |
| BsiEI | CGRYCG | 1 cut(s) | 1165 |
| BsiHKAI | GWGCWC | 3 cut(s) | 4787, 5337, 5688 |
| BsiHKCI | CYCGRG | 4 cut(s) | 69, 1720, 4999, 5874 |
| BsiSI | CCGG | 4 cut(s) | 240, 498, 682, 2001 |
| BslFI | GGGAC | 6 cut(s) | 393, 1537, 2013, 2806, 2989, 4904 |
| BsmAI | GTCTC | 5 cut(s) | 2706, 3481, 3855, 4000, 4118 |
| BsmBI | CGTCTC | 1 cut(s) | 3855 |
| BsmFI | GGGAC | 6 cut(s) | 393, 1537, 2013, 2806, 2989, 4904 |
| BsmI | GAATGC | 1 cut(s) | 4180 |
| Bso31I | GGTCTC | 1 cut(s) | 4000 |
| BsoBI | CYCGRG | 4 cut(s) | 69, 1720, 4999, 5874 |
| Bsp119I | TTCGAA | 1 cut(s) | 3269 |
| Bsp1286I | GDGCHC | 3 cut(s) | 4787, 5337, 5688 |
| Bsp1407I | TGTACA | 1 cut(s) | 4208 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 797 |
| Bsp19I | CCATGG | 3 cut(s) | 9, 1858, 2031 |
| Bsp68I | TCGCGA | 1 cut(s) | 3052 |
| BspDI | ATCGAT | 3 cut(s) | 18, 1968, 5296 |
| BspFNI | CGCG | 4 cut(s) | 154, 207, 267, 3052 |
| BspHI | TCATGA | 3 cut(s) | 475, 1236, 1270 |
| BspMAI | CTGCAG | 6 cut(s) | 715, 2875, 3381, 4390, 4720, 6005 |
| BspMI | ACCTGC | 3 cut(s) | 3370, 5956, 5994 |
| BspQI | GCTCTTC | 1 cut(s) | 3612 |
| BspT104I | TTCGAA | 1 cut(s) | 3269 |
| BspT107I | GGYRCC | 1 cut(s) | 1063 |
| BspTI | CTTAAG | 2 cut(s) | 4060, 5744 |
| BspTNI | GGTCTC | 1 cut(s) | 4000 |
| BsrBI | CCGCTC | 1 cut(s) | 5471 |
| BsrDI | GCAATG | 3 cut(s) | 2019, 3080, 5661 |
| BsrFI | RCCGGY | 2 cut(s) | 239, 497 |
| BsrGI | TGTACA | 1 cut(s) | 4208 |
| BssAI | RCCGGY | 2 cut(s) | 239, 497 |
| BssNAI | GTATAC | 1 cut(s) | 5831 |
| BssNI | GRCGYC | 2 cut(s) | 243, 1200 |
| BssSI | CACGAG | 5 cut(s) | 42, 277, 896, 2709, 5247 |
| BssT1I | CCWWGG | 5 cut(s) | 9, 1858, 2031, 2457, 4010 |
| Bst1107I | GTATAC | 1 cut(s) | 5831 |
| Bst2BI | CACGAG | 5 cut(s) | 42, 277, 896, 2709, 5247 |
| Bst2UI | CCWGG | 9 cut(s) | 219, 312, 545, 1556, 2929, 4668, 4700, 5330, 5885 |
| Bst6I | CTCTTC | 8 cut(s) | 1362, 1784, 2709, 3612, 4153, 4291, 5064, 5509 |
| BstACI | GRCGYC | 2 cut(s) | 243, 1200 |
| BstAFI | CTTAAG | 2 cut(s) | 4060, 5744 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 411, 1574, 2572, 4429, 5660 |
| BstAUI | TGTACA | 1 cut(s) | 4208 |
| BstBAI | YACGTR | 4 cut(s) | 5046, 5109, 5639, 6043 |
| BstBI | TTCGAA | 1 cut(s) | 3269 |
| BstDSI | CCRYGG | 5 cut(s) | 9, 612, 1858, 2031, 2896 |
| BstEII | GGTNACC | 2 cut(s) | 1174, 3134 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 593 |
| BstFNI | CGCG | 4 cut(s) | 154, 207, 267, 3052 |
| BstH2I | RGCGCY | 3 cut(s) | 2500, 2539, 3059 |
| BstHHI | GCGC | 3 cut(s) | 2499, 2538, 3058 |
| BstMAI | GTCTC | 5 cut(s) | 2706, 3481, 3855, 4000, 4118 |
| BstMCI | CGRYCG | 1 cut(s) | 1165 |
| BstNI | CCWGG | 9 cut(s) | 219, 312, 545, 1556, 2929, 4668, 4700, 5330, 5885 |
| BstNSI | RCATGY | 7 cut(s) | 414, 1572, 1602, 3773, 4427, 4646, 5183 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1549 |
| BstPI | GGTNACC | 2 cut(s) | 1174, 3134 |
| BstSFI | CTRYAG | 8 cut(s) | 711, 2150, 2871, 3377, 4386, 4716, 4963, 6001 |
| BstSLI | GKGCMC | 1 cut(s) | 5337 |
| BstUI | CGCG | 4 cut(s) | 154, 207, 267, 3052 |
| BstV2I | GAAGAC | 5 cut(s) | 1164, 1482, 1860, 4452, 5279 |
| BstX2I | RGATCY | 7 cut(s) | 1997, 2860, 4303, 4516, 4856, 5465, 5887 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2273, 3738 |
| BstYI | RGATCY | 7 cut(s) | 1997, 2860, 4303, 4516, 4856, 5465, 5887 |
| BstZ17I | GTATAC | 1 cut(s) | 5831 |
| BstZI | CGGCCG | 1 cut(s) | 1162 |
| Bsu15I | ATCGAT | 3 cut(s) | 18, 1968, 5296 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3439 |
| BsuI | GTATCC | 3 cut(s) | 1035, 1638, 4615 |
| BsuTUI | ATCGAT | 3 cut(s) | 18, 1968, 5296 |
| BtgI | CCRYGG | 5 cut(s) | 9, 612, 1858, 2031, 2896 |
| BtgZI | GCGATG | 2 cut(s) | 2114, 2653 |
| BtrI | CACGTC | 2 cut(s) | 4772, 4808 |
| BtsI | GCAGTG | 3 cut(s) | 790, 1584, 5833 |
| BtuMI | TCGCGA | 1 cut(s) | 3052 |
| BveI | ACCTGC | 3 cut(s) | 3370, 5956, 5994 |
| CaiI | CAGNNNCTG | 7 cut(s) | 2192, 2759, 3452, 3575, 3986, 4217, 4859 |
| CciI | TCATGA | 3 cut(s) | 475, 1236, 1270 |
| CfoI | GCGC | 3 cut(s) | 2499, 2538, 3058 |
| Cfr10I | RCCGGY | 2 cut(s) | 239, 497 |
| Cfr13I | GGNCC | 7 cut(s) | 328, 617, 2027, 3067, 3728, 4340, 4382 |
| ClaI | ATCGAT | 3 cut(s) | 18, 1968, 5296 |
| CseI | GACGC | 3 cut(s) | 232, 5660, 5855 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 5386, 5421 |
| EaeI | YGGCCR | 3 cut(s) | 349, 1162, 2072 |
| EagI | CGGCCG | 1 cut(s) | 1162 |
| Eam1104I | CTCTTC | 8 cut(s) | 1362, 1784, 2709, 3612, 4153, 4291, 5064, 5509 |
| EarI | CTCTTC | 8 cut(s) | 1362, 1784, 2709, 3612, 4153, 4291, 5064, 5509 |
| EciI | GGCGGA | 1 cut(s) | 2365 |
| Ecl136II | GAGCTC | 2 cut(s) | 4785, 5686 |
| EclXI | CGGCCG | 1 cut(s) | 1162 |
| Eco130I | CCWWGG | 5 cut(s) | 9, 1858, 2031, 2457, 4010 |
| Eco147I | AGGCCT | 2 cut(s) | 1353, 4698 |
| Eco24I | GRGCYC | 2 cut(s) | 4787, 5688 |
| Eco31I | GGTCTC | 1 cut(s) | 4000 |
| Eco32I | GATATC | 2 cut(s) | 16, 4851 |
| Eco47I | GGWCC | 3 cut(s) | 2027, 3067, 3728 |
| Eco47III | AGCGCT | 2 cut(s) | 2498, 2537 |
| Eco52I | CGGCCG | 1 cut(s) | 1162 |
| Eco53kI | GAGCTC | 2 cut(s) | 4785, 5686 |
| Eco72I | CACGTG | 2 cut(s) | 5046, 5639 |
| Eco81I | CCTNAGG | 1 cut(s) | 3439 |
| Eco88I | CYCGRG | 4 cut(s) | 69, 1720, 4999, 5874 |
| Eco91I | GGTNACC | 2 cut(s) | 1174, 3134 |
| EcoICRI | GAGCTC | 2 cut(s) | 4785, 5686 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 593 |
| EcoO109I | RGGNCCY | 3 cut(s) | 328, 617, 3067 |
| EcoO65I | GGTNACC | 2 cut(s) | 1174, 3134 |
| EcoRI | GAATTC | 2 cut(s) | 3658, 5053 |
| EcoRII | CCWGG | 9 cut(s) | 217, 310, 543, 1554, 2927, 4666, 4698, 5328, 5883 |
| EcoRV | GATATC | 2 cut(s) | 16, 4851 |
| EcoT14I | CCWWGG | 5 cut(s) | 9, 1858, 2031, 2457, 4010 |
| EcoT22I | ATGCAT | 1 cut(s) | 1386 |
| EcoT38I | GRGCYC | 2 cut(s) | 4787, 5688 |
| ErhI | CCWWGG | 5 cut(s) | 9, 1858, 2031, 2457, 4010 |
| Esp3I | CGTCTC | 1 cut(s) | 3855 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 942, 974 |
| FaqI | GGGAC | 6 cut(s) | 393, 1537, 2013, 2806, 2989, 4904 |
| FauI | CCCGC | 1 cut(s) | 348 |
| FauNDI | CATATG | 2 cut(s) | 2086, 4369 |
| FbaI | TGATCA | 1 cut(s) | 3799 |
| FblI | GTMKAC | 4 cut(s) | 5, 3759, 4555, 5830 |
| FriOI | GRGCYC | 2 cut(s) | 4787, 5688 |
| GlaI | GCGC | 3 cut(s) | 2498, 2537, 3057 |
| GsaI | CCCAGC | 2 cut(s) | 1706, 4734 |
| GsuI | CTGGAG | 1 cut(s) | 2448 |
| HaeII | RGCGCY | 3 cut(s) | 2500, 2539, 3059 |
| HapII | CCGG | 4 cut(s) | 240, 498, 682, 2001 |
| HgaI | GACGC | 3 cut(s) | 232, 5660, 5855 |
| HhaI | GCGC | 3 cut(s) | 2499, 2538, 3058 |
| Hin1I | GRCGYC | 2 cut(s) | 243, 1200 |
| Hin6I | GCGC | 3 cut(s) | 2497, 2536, 3056 |
| HinP1I | GCGC | 3 cut(s) | 2497, 2536, 3056 |
| HincII | GTYRAC | 6 cut(s) | 832, 1668, 1909, 2622, 3224, 4556 |
| HindII | GTYRAC | 6 cut(s) | 832, 1668, 1909, 2622, 3224, 4556 |
| HindIII | AAGCTT | 2 cut(s) | 3229, 5447 |
| HpaI | GTTAAC | 2 cut(s) | 1668, 2622 |
| HpaII | CCGG | 4 cut(s) | 240, 498, 682, 2001 |
| Hpy99I | CGWCG | 2 cut(s) | 1612, 4557 |
| Hsp92I | GRCGYC | 2 cut(s) | 243, 1200 |
| HspAI | GCGC | 3 cut(s) | 2497, 2536, 3056 |
| KroI | GCCGGC | 1 cut(s) | 239 |
| KroNI | GCCGGC | 1 cut(s) | 241 |
| Ksp22I | TGATCA | 1 cut(s) | 3799 |
| KspAI | GTTAAC | 2 cut(s) | 1668, 2622 |
| LguI | GCTCTTC | 1 cut(s) | 3612 |
| MbiI | CCGCTC | 1 cut(s) | 5471 |
| MfeI | CAATTG | 2 cut(s) | 1410, 2690 |
| MflI | RGATCY | 7 cut(s) | 1997, 2860, 4303, 4516, 4856, 5465, 5887 |
| MhlI | GDGCHC | 3 cut(s) | 4787, 5337, 5688 |
| MlsI | TGGCCA | 1 cut(s) | 2074 |
| MluNI | TGGCCA | 1 cut(s) | 2074 |
| MlyI | GAGTC | 5 cut(s) | 1249, 2926, 3056, 3198, 5495 |
| MmeI | TCCRAC | 4 cut(s) | 449, 2091, 3852, 5607 |
| Mox20I | TGGCCA | 1 cut(s) | 2074 |
| Mph1103I | ATGCAT | 1 cut(s) | 1386 |
| MroNI | GCCGGC | 1 cut(s) | 239 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1224, 2556, 2652, 4681 |
| MscI | TGGCCA | 1 cut(s) | 2074 |
| Msp20I | TGGCCA | 1 cut(s) | 2074 |
| MspA1I | CMGCKG | 6 cut(s) | 355, 1030, 2468, 4214, 5899, 5914 |
| MspCI | CTTAAG | 2 cut(s) | 4060, 5744 |
| MspI | CCGG | 4 cut(s) | 240, 498, 682, 2001 |
| MunI | CAATTG | 2 cut(s) | 1410, 2690 |
| Mva1269I | GAATGC | 1 cut(s) | 4180 |
| MvaI | CCWGG | 9 cut(s) | 219, 312, 545, 1556, 2929, 4668, 4700, 5330, 5885 |
| MvnI | CGCG | 4 cut(s) | 154, 207, 267, 3052 |
| NaeI | GCCGGC | 1 cut(s) | 241 |
| NciI | CCSGG | 1 cut(s) | 683 |
| NcoI | CCATGG | 3 cut(s) | 9, 1858, 2031 |
| NdeI | CATATG | 2 cut(s) | 2086, 4369 |
| NgoMIV | GCCGGC | 1 cut(s) | 239 |
| NmeAIII | GCCGAG | 2 cut(s) | 3544, 5452 |
| NruI | TCGCGA | 1 cut(s) | 3052 |
| NsiI | ATGCAT | 1 cut(s) | 1386 |
| NspI | RCATGY | 7 cut(s) | 414, 1572, 1602, 3773, 4427, 4646, 5183 |
| NspV | TTCGAA | 1 cut(s) | 3269 |
| OliI | CACNNNNGTG | 2 cut(s) | 2271, 5669 |
| PacI | TTAATTAA | 1 cut(s) | 4899 |
| PaeI | GCATGC | 1 cut(s) | 4427 |
| PaeR7I | CTCGAG | 2 cut(s) | 69, 4999 |
| PagI | TCATGA | 3 cut(s) | 475, 1236, 1270 |
| PceI | AGGCCT | 2 cut(s) | 1353, 4698 |
| PciI | ACATGT | 2 cut(s) | 4642, 5179 |
| PciSI | GCTCTTC | 1 cut(s) | 3612 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2887 |
| PctI | GAATGC | 1 cut(s) | 4180 |
| PdiI | GCCGGC | 1 cut(s) | 241 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1224, 2556, 2652, 4681 |
| PflFI | GACNNNGTC | 1 cut(s) | 4865 |
| PleI | GAGTC | 5 cut(s) | 1248, 2925, 3055, 3198, 5495 |
| PmaCI | CACGTG | 2 cut(s) | 5046, 5639 |
| PmlI | CACGTG | 2 cut(s) | 5046, 5639 |
| PpsI | GAGTC | 5 cut(s) | 1248, 2925, 3055, 3198, 5495 |
| Ppu21I | YACGTR | 4 cut(s) | 5046, 5109, 5639, 6043 |
| PpuMI | RGGWCCY | 1 cut(s) | 3067 |
| PscI | ACATGT | 2 cut(s) | 4642, 5179 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1549 |
| PshBI | ATTAAT | 2 cut(s) | 1949, 3195 |
| Psp124BI | GAGCTC | 2 cut(s) | 4787, 5688 |
| Psp1406I | AACGTT | 1 cut(s) | 1123 |
| Psp5II | RGGWCCY | 1 cut(s) | 3067 |
| Psp6I | CCWGG | 9 cut(s) | 217, 310, 543, 1554, 2927, 4666, 4698, 5328, 5883 |
| PspCI | CACGTG | 2 cut(s) | 5046, 5639 |
| PspEI | GGTNACC | 2 cut(s) | 1174, 3134 |
| PspFI | CCCAGC | 2 cut(s) | 1702, 4730 |
| PspGI | CCWGG | 9 cut(s) | 217, 310, 543, 1554, 2927, 4666, 4698, 5328, 5883 |
| PspPI | GGNCC | 7 cut(s) | 328, 617, 2027, 3067, 3728, 4340, 4382 |
| PspPPI | RGGWCCY | 1 cut(s) | 3067 |
| PspXI | VCTCGAGB | 2 cut(s) | 69, 4999 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 183, 215, 2871, 2903 |
| PstI | CTGCAG | 6 cut(s) | 715, 2875, 3381, 4390, 4720, 6005 |
| PstNI | CAGNNNCTG | 7 cut(s) | 2192, 2759, 3452, 3575, 3986, 4217, 4859 |
| PsuI | RGATCY | 7 cut(s) | 1997, 2860, 4303, 4516, 4856, 5465, 5887 |
| PsyI | GACNNNGTC | 1 cut(s) | 4865 |
| PvuII | CAGCTG | 2 cut(s) | 2468, 4214 |
| RruI | TCGCGA | 1 cut(s) | 3052 |
| SacI | GAGCTC | 2 cut(s) | 4787, 5688 |
| SalI | GTCGAC | 1 cut(s) | 4554 |
| SapI | GCTCTTC | 1 cut(s) | 3612 |
| Sau96I | GGNCC | 7 cut(s) | 328, 617, 2027, 3067, 3728, 4340, 4382 |
| ScaI | AGTACT | 4 cut(s) | 1753, 4108, 4324, 4904 |
| SchI | GAGTC | 5 cut(s) | 1249, 2926, 3056, 3198, 5495 |
| SduI | GDGCHC | 3 cut(s) | 4787, 5337, 5688 |
| SfcI | CTRYAG | 8 cut(s) | 711, 2150, 2871, 3377, 4386, 4716, 4963, 6001 |
| Sfr274I | CTCGAG | 2 cut(s) | 69, 4999 |
| SfuI | TTCGAA | 1 cut(s) | 3269 |
| SgrAI | CRCCGGYG | 1 cut(s) | 497 |
| SinI | GGWCC | 3 cut(s) | 2027, 3067, 3728 |
| SlaI | CTCGAG | 2 cut(s) | 69, 4999 |
| SmlI | CTYRAG | 9 cut(s) | 69, 284, 323, 2531, 2854, 4060, 4999, 5717, 5744 |
| SmoI | CTYRAG | 9 cut(s) | 69, 284, 323, 2531, 2854, 4060, 4999, 5717, 5744 |
| SpeI | ACTAGT | 2 cut(s) | 4649, 5645 |
| SphI | GCATGC | 1 cut(s) | 4427 |
| SseBI | AGGCCT | 2 cut(s) | 1353, 4698 |
| SspI | AATATT | 3 cut(s) | 2251, 5480, 5515 |
| SstI | GAGCTC | 2 cut(s) | 4787, 5688 |
| StuI | AGGCCT | 2 cut(s) | 1353, 4698 |
| StyI | CCWWGG | 5 cut(s) | 9, 1858, 2031, 2457, 4010 |
| TatI | WGTACW | 8 cut(s) | 1751, 2835, 3917, 4106, 4143, 4208, 4322, 4902 |
| TspGWI | ACGGA | 3 cut(s) | 435, 2885, 3745 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4865 |
| Vha464I | CTTAAG | 2 cut(s) | 4060, 5744 |
| VneI | GTGCAC | 1 cut(s) | 5333 |
| VpaK11BI | GGWCC | 3 cut(s) | 2027, 3067, 3728 |
| VspI | ATTAAT | 2 cut(s) | 1949, 3195 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 593 |
| XbaI | TCTAGA | 3 cut(s) | 4030, 4286, 4840 |
| XceI | RCATGY | 7 cut(s) | 414, 1572, 1602, 3773, 4427, 4646, 5183 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1865, 4884 |
| XhoI | CTCGAG | 2 cut(s) | 69, 4999 |
| XmaJI | CCTAGG | 1 cut(s) | 4010 |
| XmiI | GTMKAC | 4 cut(s) | 5, 3759, 4555, 5830 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1224, 2556, 2652, 4681 |
| ZraI | GACGTC | 1 cut(s) | 1201 |
| ZrmI | AGTACT | 4 cut(s) | 1753, 4108, 4324, 4904 |
| Zsp2I | ATGCAT | 1 cut(s) | 1386 |