E3 ubiquitin-protein ligase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G02310 AT5G02310 AT5G02310 |
| fragaria_vesca | FvH4_6g13660 FvH4_6g13660 FvH4_6g13660 FvH4_6g13660 FvH4_6g13660 |
| malus_domestica | MD04G1129300.v1.1 MD12G1142100.v1.1 |
| prunus_persica | Prupe.6G255500_v2.0.a1 Prupe.6G255500_v2.0.a1 Prupe.6G255500_v2.0.a1 |
| pyrus_communis | pycom04g11750 pycom12g13690 |
| rosa_chinensis | RchiOBHm_Chr3g0466531 |
| rosa_laevigata | RLG00000024565 |
| rosa_multiflora | Rmu_sc0003332.1_g000005 |
| rosa_roxburghii | Rroxscaffold_6G00414400 |
| rosa_rugosa | Rorug03G0082300 |
| rosa_samantha | Rh3AG129300 Rh3BG150600 Rh3CG150400 Rh3DG151300 |
| rosa_wichuraiana | Rw3G012220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1134 |
| Acc36I | ACCTGC | 2 cut(s) | 3265, 5851 |
| AccB1I | GGYRCC | 1 cut(s) | 994 |
| AccBSI | CCGCTC | 1 cut(s) | 5366 |
| AccI | GTMKAC | 3 cut(s) | 3654, 4450, 5725 |
| AccII | CGCG | 3 cut(s) | 124, 198, 2983 |
| AclI | AACGTT | 2 cut(s) | 1054, 6091 |
| AcoI | YGGCCR | 4 cut(s) | 280, 1093, 2003, 6011 |
| AcuI | CTGAAG | 9 cut(s) | 313, 860, 1569, 2357, 3251, 3956, 4134, 4382, 5724 |
| AcvI | CACGTG | 2 cut(s) | 4941, 5534 |
| AcyI | GRCGYC | 2 cut(s) | 174, 1131 |
| AfeI | AGCGCT | 2 cut(s) | 2429, 2468 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 247, 526, 1102, 1294, 1740, 2888, 3897, 4421, 4568 |
| AflII | CTTAAG | 2 cut(s) | 3955, 5639 |
| AflIII | ACRYGT | 3 cut(s) | 4537, 4938, 5074 |
| AgeI | ACCGGT | 1 cut(s) | 428 |
| AhlI | ACTAGT | 2 cut(s) | 4544, 5540 |
| AjiI | CACGTC | 2 cut(s) | 4667, 4703 |
| AjnI | CCWGG | 9 cut(s) | 241, 1485, 2718, 2858, 4561, 4593, 5223, 5778, 6008 |
| AleI | CACNNNNGTG | 2 cut(s) | 2202, 5564 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1786, 1818 |
| Alw21I | GWGCWC | 4 cut(s) | 534, 4682, 5232, 5583 |
| Alw26I | GTCTC | 5 cut(s) | 2637, 3376, 3750, 3895, 4013 |
| Alw44I | GTGCAC | 1 cut(s) | 5228 |
| AlwNI | CAGNNNCTG | 7 cut(s) | 2123, 2690, 3347, 3470, 3881, 4112, 4754 |
| Ama87I | CYCGRG | 4 cut(s) | 39, 1651, 4894, 5769 |
| Aor51HI | AGCGCT | 2 cut(s) | 2429, 2468 |
| ApaLI | GTGCAC | 1 cut(s) | 5228 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 261, 293, 551, 583 |
| AseI | ATTAAT | 2 cut(s) | 1880, 3090 |
| AsiGI | ACCGGT | 1 cut(s) | 428 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1155, 2487, 2583, 4576 |
| AspA2I | CCTAGG | 1 cut(s) | 3905 |
| AspLEI | GCGC | 4 cut(s) | 474, 2430, 2469, 2989 |
| AspS9I | GGNCC | 7 cut(s) | 259, 548, 1958, 2998, 3623, 4235, 4277 |
| AsuC2I | CCSGG | 1 cut(s) | 614 |
| AsuII | TTCGAA | 2 cut(s) | 3164, 6143 |
| AvaI | CYCGRG | 4 cut(s) | 39, 1651, 4894, 5769 |
| AvaII | GGWCC | 3 cut(s) | 1958, 2998, 3623 |
| AvrII | CCTAGG | 1 cut(s) | 3905 |
| AxyI | CCTNAGG | 1 cut(s) | 3334 |
| BaeGI | GKGCMC | 1 cut(s) | 5232 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 2806, 2839, 4509, 4542, 5934, 5967 |
| BalI | TGGCCA | 2 cut(s) | 2005, 6013 |
| BamHI | GGATCC | 2 cut(s) | 1928, 5360 |
| BanI | GGYRCC | 1 cut(s) | 994 |
| BanII | GRGCYC | 3 cut(s) | 534, 4682, 5583 |
| BauI | CACGAG | 4 cut(s) | 208, 827, 2640, 5142 |
| BbrPI | CACGTG | 2 cut(s) | 4941, 5534 |
| BbsI | GAAGAC | 5 cut(s) | 1095, 1413, 1791, 4347, 5174 |
| Bbv12I | GWGCWC | 4 cut(s) | 534, 4682, 5232, 5583 |
| BbvCI | CCTCAGC | 1 cut(s) | 2259 |
| BceAI | ACGGC | 5 cut(s) | 1080, 1108, 1493, 4431, 6014 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 1518, 1552, 2219, 2253, 5468, 5502, 5795, 5829 |
| BciT130I | CCWGG | 9 cut(s) | 243, 1487, 2720, 2860, 4563, 4595, 5225, 5780, 6010 |
| BciVI | GTATCC | 3 cut(s) | 966, 1569, 4510 |
| BclI | TGATCA | 1 cut(s) | 3694 |
| BcnI | CCSGG | 1 cut(s) | 614 |
| BcoDI | GTCTC | 5 cut(s) | 2637, 3376, 3750, 3895, 4013 |
| BcuI | ACTAGT | 2 cut(s) | 4544, 5540 |
| BfmI | CTRYAG | 8 cut(s) | 642, 2081, 2802, 3272, 4281, 4611, 4858, 5896 |
| BfoI | RGCGCY | 4 cut(s) | 475, 2431, 2470, 2990 |
| BfrI | CTTAAG | 2 cut(s) | 3955, 5639 |
| BfuAI | ACCTGC | 2 cut(s) | 3265, 5851 |
| BfuI | GTATCC | 3 cut(s) | 966, 1569, 4510 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 288 |
| BglII | AGATCT | 1 cut(s) | 5990 |
| BlnI | CCTAGG | 1 cut(s) | 3905 |
| BlpI | GCTNAGC | 1 cut(s) | 728 |
| BmcAI | AGTACT | 4 cut(s) | 1684, 4003, 4219, 4799 |
| Bme18I | GGWCC | 3 cut(s) | 1958, 2998, 3623 |
| BmeT110I | CYCGRG | 4 cut(s) | 39, 1651, 4894, 5769 |
| BmgBI | CACGTC | 2 cut(s) | 4667, 4703 |
| BmgT120I | GGNCC | 7 cut(s) | 259, 548, 1958, 2998, 3623, 4235, 4277 |
| BmrI | ACTGGG | 1 cut(s) | 5955 |
| BmuI | ACTGGG | 1 cut(s) | 5955 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1480 |
| BpiI | GAAGAC | 5 cut(s) | 1095, 1413, 1791, 4347, 5174 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 191, 223 |
| BpmI | CTGGAG | 1 cut(s) | 2379 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2259 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 728 |
| Bpu14I | TTCGAA | 2 cut(s) | 3164, 6143 |
| BpuEI | CTTGAG | 5 cut(s) | 200, 239, 2483, 2770, 5597 |
| BpuMI | CCSGG | 1 cut(s) | 614 |
| Bsa29I | ATCGAT | 2 cut(s) | 1899, 5191 |
| BsaAI | YACGTR | 4 cut(s) | 26, 4941, 5004, 5534 |
| BsaBI | GATNNNNATC | 1 cut(s) | 5197 |
| BsaHI | GRCGYC | 2 cut(s) | 174, 1131 |
| BsaI | GGTCTC | 1 cut(s) | 3895 |
| BsaWI | WCCGGW | 2 cut(s) | 428, 1931 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 130, 160 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 247, 526, 1102, 1294, 1740, 2888, 3897, 4421, 4568 |
| Bse118I | RCCGGY | 2 cut(s) | 170, 428 |
| Bse21I | CCTNAGG | 1 cut(s) | 3334 |
| Bse3DI | GCAATG | 3 cut(s) | 1950, 3011, 5556 |
| Bse8I | GATNNNNATC | 1 cut(s) | 5197 |
| BseBI | CCWGG | 9 cut(s) | 243, 1487, 2720, 2860, 4563, 4595, 5225, 5780, 6010 |
| BseCI | ATCGAT | 2 cut(s) | 1899, 5191 |
| BseJI | GATNNNNATC | 1 cut(s) | 5197 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 247, 526, 1102, 1294, 1740, 2888, 3897, 4421, 4568 |
| BseMI | GCAATG | 3 cut(s) | 1950, 3011, 5556 |
| BseRI | GAGGAG | 2 cut(s) | 542, 2768 |
| BseSI | GKGCMC | 1 cut(s) | 5232 |
| BseX3I | CGGCCG | 1 cut(s) | 1093 |
| BseYI | CCCAGC | 2 cut(s) | 1633, 4625 |
| BsgI | GTGCAG | 7 cut(s) | 522, 733, 1527, 2516, 3504, 5829, 5979 |
| Bsh1236I | CGCG | 3 cut(s) | 124, 198, 2983 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1096 |
| BshNI | GGYRCC | 1 cut(s) | 994 |
| BshTI | ACCGGT | 1 cut(s) | 428 |
| BshVI | ATCGAT | 2 cut(s) | 1899, 5191 |
| BsiEI | CGRYCG | 1 cut(s) | 1096 |
| BsiHKAI | GWGCWC | 4 cut(s) | 534, 4682, 5232, 5583 |
| BsiHKCI | CYCGRG | 4 cut(s) | 39, 1651, 4894, 5769 |
| BsiSI | CCGG | 4 cut(s) | 171, 429, 613, 1932 |
| BslFI | GGGAC | 6 cut(s) | 324, 1468, 1944, 2737, 2920, 4799 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 247, 526, 1102, 1294, 1740, 2888, 3897, 4421, 4568 |
| BsmAI | GTCTC | 5 cut(s) | 2637, 3376, 3750, 3895, 4013 |
| BsmBI | CGTCTC | 1 cut(s) | 3750 |
| BsmFI | GGGAC | 6 cut(s) | 324, 1468, 1944, 2737, 2920, 4799 |
| BsmI | GAATGC | 1 cut(s) | 4075 |
| Bso31I | GGTCTC | 1 cut(s) | 3895 |
| BsoBI | CYCGRG | 4 cut(s) | 39, 1651, 4894, 5769 |
| Bsp119I | TTCGAA | 2 cut(s) | 3164, 6143 |
| Bsp1286I | GDGCHC | 4 cut(s) | 534, 4682, 5232, 5583 |
| Bsp1407I | TGTACA | 1 cut(s) | 4103 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 728 |
| Bsp19I | CCATGG | 2 cut(s) | 1789, 1962 |
| Bsp68I | TCGCGA | 1 cut(s) | 2983 |
| BspDI | ATCGAT | 2 cut(s) | 1899, 5191 |
| BspFNI | CGCG | 3 cut(s) | 124, 198, 2983 |
| BspHI | TCATGA | 3 cut(s) | 406, 1167, 1201 |
| BspMAI | CTGCAG | 6 cut(s) | 646, 2806, 3276, 4285, 4615, 5900 |
| BspMI | ACCTGC | 2 cut(s) | 3265, 5851 |
| BspQI | GCTCTTC | 1 cut(s) | 3507 |
| BspT104I | TTCGAA | 2 cut(s) | 3164, 6143 |
| BspT107I | GGYRCC | 1 cut(s) | 994 |
| BspTI | CTTAAG | 2 cut(s) | 3955, 5639 |
| BspTNI | GGTCTC | 1 cut(s) | 3895 |
| BsrBI | CCGCTC | 1 cut(s) | 5366 |
| BsrDI | GCAATG | 3 cut(s) | 1950, 3011, 5556 |
| BsrFI | RCCGGY | 2 cut(s) | 170, 428 |
| BsrGI | TGTACA | 1 cut(s) | 4103 |
| BssAI | RCCGGY | 2 cut(s) | 170, 428 |
| BssNAI | GTATAC | 1 cut(s) | 5726 |
| BssNI | GRCGYC | 2 cut(s) | 174, 1131 |
| BssSI | CACGAG | 4 cut(s) | 208, 827, 2640, 5142 |
| BssT1I | CCWWGG | 5 cut(s) | 475, 1789, 1962, 2388, 3905 |
| Bst1107I | GTATAC | 1 cut(s) | 5726 |
| Bst2BI | CACGAG | 4 cut(s) | 208, 827, 2640, 5142 |
| Bst2UI | CCWGG | 9 cut(s) | 243, 1487, 2720, 2860, 4563, 4595, 5225, 5780, 6010 |
| Bst6I | CTCTTC | 9 cut(s) | 1293, 1715, 2640, 3507, 4048, 4186, 4959, 5404, 6036 |
| BstACI | GRCGYC | 2 cut(s) | 174, 1131 |
| BstAFI | CTTAAG | 2 cut(s) | 3955, 5639 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 342, 1505, 2503, 4324, 5555 |
| BstAUI | TGTACA | 1 cut(s) | 4103 |
| BstBAI | YACGTR | 4 cut(s) | 26, 4941, 5004, 5534 |
| BstBI | TTCGAA | 2 cut(s) | 3164, 6143 |
| BstDSI | CCRYGG | 4 cut(s) | 543, 1789, 1962, 2827 |
| BstEII | GGTNACC | 1 cut(s) | 1105 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 524 |
| BstFNI | CGCG | 3 cut(s) | 124, 198, 2983 |
| BstH2I | RGCGCY | 4 cut(s) | 475, 2431, 2470, 2990 |
| BstHHI | GCGC | 4 cut(s) | 474, 2430, 2469, 2989 |
| BstMAI | GTCTC | 5 cut(s) | 2637, 3376, 3750, 3895, 4013 |
| BstMCI | CGRYCG | 1 cut(s) | 1096 |
| BstNI | CCWGG | 9 cut(s) | 243, 1487, 2720, 2860, 4563, 4595, 5225, 5780, 6010 |
| BstNSI | RCATGY | 8 cut(s) | 345, 1503, 1533, 3668, 4142, 4322, 4541, 5078 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1480 |
| BstPI | GGTNACC | 1 cut(s) | 1105 |
| BstSFI | CTRYAG | 8 cut(s) | 642, 2081, 2802, 3272, 4281, 4611, 4858, 5896 |
| BstSLI | GKGCMC | 1 cut(s) | 5232 |
| BstSNI | TACGTA | 1 cut(s) | 26 |
| BstUI | CGCG | 3 cut(s) | 124, 198, 2983 |
| BstV2I | GAAGAC | 5 cut(s) | 1095, 1413, 1791, 4347, 5174 |
| BstX2I | RGATCY | 8 cut(s) | 1928, 2791, 4198, 4411, 4751, 5360, 5782, 5990 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2204, 3633 |
| BstYI | RGATCY | 8 cut(s) | 1928, 2791, 4198, 4411, 4751, 5360, 5782, 5990 |
| BstZ17I | GTATAC | 1 cut(s) | 5726 |
| BstZI | CGGCCG | 1 cut(s) | 1093 |
| Bsu15I | ATCGAT | 2 cut(s) | 1899, 5191 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3334 |
| BsuI | GTATCC | 3 cut(s) | 966, 1569, 4510 |
| BsuTUI | ATCGAT | 2 cut(s) | 1899, 5191 |
| BtgI | CCRYGG | 4 cut(s) | 543, 1789, 1962, 2827 |
| BtgZI | GCGATG | 2 cut(s) | 2045, 2584 |
| BtrI | CACGTC | 2 cut(s) | 4667, 4703 |
| BtsI | GCAGTG | 4 cut(s) | 721, 1515, 5728, 5931 |
| BtuMI | TCGCGA | 1 cut(s) | 2983 |
| BveI | ACCTGC | 2 cut(s) | 3265, 5851 |
| CaiI | CAGNNNCTG | 7 cut(s) | 2123, 2690, 3347, 3470, 3881, 4112, 4754 |
| CciI | TCATGA | 3 cut(s) | 406, 1167, 1201 |
| CfoI | GCGC | 4 cut(s) | 474, 2430, 2469, 2989 |
| Cfr10I | RCCGGY | 2 cut(s) | 170, 428 |
| Cfr13I | GGNCC | 7 cut(s) | 259, 548, 1958, 2998, 3623, 4235, 4277 |
| ClaI | ATCGAT | 2 cut(s) | 1899, 5191 |
| CseI | GACGC | 3 cut(s) | 163, 5555, 5750 |
| CspAI | ACCGGT | 1 cut(s) | 428 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 6060, 6095 |
| EaeI | YGGCCR | 4 cut(s) | 280, 1093, 2003, 6011 |
| EagI | CGGCCG | 1 cut(s) | 1093 |
| Eam1104I | CTCTTC | 9 cut(s) | 1293, 1715, 2640, 3507, 4048, 4186, 4959, 5404, 6036 |
| EarI | CTCTTC | 9 cut(s) | 1293, 1715, 2640, 3507, 4048, 4186, 4959, 5404, 6036 |
| EciI | GGCGGA | 1 cut(s) | 2296 |
| Ecl136II | GAGCTC | 3 cut(s) | 532, 4680, 5581 |
| EclXI | CGGCCG | 1 cut(s) | 1093 |
| Eco105I | TACGTA | 1 cut(s) | 26 |
| Eco130I | CCWWGG | 5 cut(s) | 475, 1789, 1962, 2388, 3905 |
| Eco147I | AGGCCT | 2 cut(s) | 1284, 4593 |
| Eco24I | GRGCYC | 3 cut(s) | 534, 4682, 5583 |
| Eco31I | GGTCTC | 1 cut(s) | 3895 |
| Eco32I | GATATC | 1 cut(s) | 4746 |
| Eco47I | GGWCC | 3 cut(s) | 1958, 2998, 3623 |
| Eco47III | AGCGCT | 2 cut(s) | 2429, 2468 |
| Eco52I | CGGCCG | 1 cut(s) | 1093 |
| Eco53kI | GAGCTC | 3 cut(s) | 532, 4680, 5581 |
| Eco57I | CTGAAG | 9 cut(s) | 313, 860, 1569, 2357, 3251, 3956, 4134, 4382, 5724 |
| Eco72I | CACGTG | 2 cut(s) | 4941, 5534 |
| Eco81I | CCTNAGG | 1 cut(s) | 3334 |
| Eco88I | CYCGRG | 4 cut(s) | 39, 1651, 4894, 5769 |
| Eco91I | GGTNACC | 1 cut(s) | 1105 |
| EcoICRI | GAGCTC | 3 cut(s) | 532, 4680, 5581 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 524 |
| EcoO109I | RGGNCCY | 3 cut(s) | 259, 548, 2998 |
| EcoO65I | GGTNACC | 1 cut(s) | 1105 |
| EcoRI | GAATTC | 2 cut(s) | 3553, 4948 |
| EcoRII | CCWGG | 9 cut(s) | 241, 1485, 2718, 2858, 4561, 4593, 5223, 5778, 6008 |
| EcoRV | GATATC | 1 cut(s) | 4746 |
| EcoT14I | CCWWGG | 5 cut(s) | 475, 1789, 1962, 2388, 3905 |
| EcoT22I | ATGCAT | 1 cut(s) | 1317 |
| EcoT38I | GRGCYC | 3 cut(s) | 534, 4682, 5583 |
| ErhI | CCWWGG | 5 cut(s) | 475, 1789, 1962, 2388, 3905 |
| Esp3I | CGTCTC | 1 cut(s) | 3750 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 873, 905 |
| FaqI | GGGAC | 6 cut(s) | 324, 1468, 1944, 2737, 2920, 4799 |
| FauI | CCCGC | 1 cut(s) | 279 |
| FauNDI | CATATG | 2 cut(s) | 2017, 4264 |
| FbaI | TGATCA | 1 cut(s) | 3694 |
| FblI | GTMKAC | 3 cut(s) | 3654, 4450, 5725 |
| FriOI | GRGCYC | 3 cut(s) | 534, 4682, 5583 |
| GlaI | GCGC | 4 cut(s) | 473, 2429, 2468, 2988 |
| GsaI | CCCAGC | 2 cut(s) | 1637, 4629 |
| GsuI | CTGGAG | 1 cut(s) | 2379 |
| HaeII | RGCGCY | 4 cut(s) | 475, 2431, 2470, 2990 |
| HapII | CCGG | 4 cut(s) | 171, 429, 613, 1932 |
| HgaI | GACGC | 3 cut(s) | 163, 5555, 5750 |
| HhaI | GCGC | 4 cut(s) | 474, 2430, 2469, 2989 |
| Hin1I | GRCGYC | 2 cut(s) | 174, 1131 |
| Hin6I | GCGC | 4 cut(s) | 472, 2428, 2467, 2987 |
| HinP1I | GCGC | 4 cut(s) | 472, 2428, 2467, 2987 |
| HincII | GTYRAC | 6 cut(s) | 763, 1599, 1840, 2553, 3119, 4451 |
| HindII | GTYRAC | 6 cut(s) | 763, 1599, 1840, 2553, 3119, 4451 |
| HindIII | AAGCTT | 2 cut(s) | 3124, 5342 |
| HpaI | GTTAAC | 2 cut(s) | 1599, 2553 |
| HpaII | CCGG | 4 cut(s) | 171, 429, 613, 1932 |
| Hpy99I | CGWCG | 2 cut(s) | 1543, 4452 |
| Hsp92I | GRCGYC | 2 cut(s) | 174, 1131 |
| HspAI | GCGC | 4 cut(s) | 472, 2428, 2467, 2987 |
| KroI | GCCGGC | 1 cut(s) | 170 |
| KroNI | GCCGGC | 1 cut(s) | 172 |
| Ksp22I | TGATCA | 1 cut(s) | 3694 |
| KspAI | GTTAAC | 2 cut(s) | 1599, 2553 |
| LguI | GCTCTTC | 1 cut(s) | 3507 |
| MbiI | CCGCTC | 1 cut(s) | 5366 |
| MfeI | CAATTG | 2 cut(s) | 1341, 2621 |
| MflI | RGATCY | 8 cut(s) | 1928, 2791, 4198, 4411, 4751, 5360, 5782, 5990 |
| MhlI | GDGCHC | 4 cut(s) | 534, 4682, 5232, 5583 |
| MlsI | TGGCCA | 2 cut(s) | 2005, 6013 |
| MluNI | TGGCCA | 2 cut(s) | 2005, 6013 |
| MlyI | GAGTC | 5 cut(s) | 1180, 2857, 2987, 3093, 5390 |
| MmeI | TCCRAC | 5 cut(s) | 380, 2022, 2759, 3747, 5502 |
| Mox20I | TGGCCA | 2 cut(s) | 2005, 6013 |
| Mph1103I | ATGCAT | 1 cut(s) | 1317 |
| MroNI | GCCGGC | 1 cut(s) | 170 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1155, 2487, 2583, 4576 |
| MscI | TGGCCA | 2 cut(s) | 2005, 6013 |
| Msp20I | TGGCCA | 2 cut(s) | 2005, 6013 |
| MspA1I | CMGCKG | 6 cut(s) | 286, 961, 2399, 4109, 5794, 5809 |
| MspCI | CTTAAG | 2 cut(s) | 3955, 5639 |
| MspI | CCGG | 4 cut(s) | 171, 429, 613, 1932 |
| MunI | CAATTG | 2 cut(s) | 1341, 2621 |
| Mva1269I | GAATGC | 1 cut(s) | 4075 |
| MvaI | CCWGG | 9 cut(s) | 243, 1487, 2720, 2860, 4563, 4595, 5225, 5780, 6010 |
| MvnI | CGCG | 3 cut(s) | 124, 198, 2983 |
| NaeI | GCCGGC | 1 cut(s) | 172 |
| NciI | CCSGG | 1 cut(s) | 614 |
| NcoI | CCATGG | 2 cut(s) | 1789, 1962 |
| NdeI | CATATG | 2 cut(s) | 2017, 4264 |
| NgoMIV | GCCGGC | 1 cut(s) | 170 |
| NmeAIII | GCCGAG | 2 cut(s) | 3439, 5347 |
| NruI | TCGCGA | 1 cut(s) | 2983 |
| NsiI | ATGCAT | 1 cut(s) | 1317 |
| NspI | RCATGY | 8 cut(s) | 345, 1503, 1533, 3668, 4142, 4322, 4541, 5078 |
| NspV | TTCGAA | 2 cut(s) | 3164, 6143 |
| OliI | CACNNNNGTG | 2 cut(s) | 2202, 5564 |
| PacI | TTAATTAA | 1 cut(s) | 4794 |
| PaeI | GCATGC | 2 cut(s) | 4142, 4322 |
| PaeR7I | CTCGAG | 2 cut(s) | 39, 4894 |
| PagI | TCATGA | 3 cut(s) | 406, 1167, 1201 |
| PceI | AGGCCT | 2 cut(s) | 1284, 4593 |
| PciI | ACATGT | 2 cut(s) | 4537, 5074 |
| PciSI | GCTCTTC | 1 cut(s) | 3507 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 540 |
| PctI | GAATGC | 1 cut(s) | 4075 |
| PdiI | GCCGGC | 1 cut(s) | 172 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1155, 2487, 2583, 4576 |
| PflFI | GACNNNGTC | 1 cut(s) | 4760 |
| PinAI | ACCGGT | 1 cut(s) | 428 |
| PleI | GAGTC | 5 cut(s) | 1179, 2856, 2986, 3093, 5390 |
| PmaCI | CACGTG | 2 cut(s) | 4941, 5534 |
| PmlI | CACGTG | 2 cut(s) | 4941, 5534 |
| PpsI | GAGTC | 5 cut(s) | 1179, 2856, 2986, 3093, 5390 |
| Ppu21I | YACGTR | 4 cut(s) | 26, 4941, 5004, 5534 |
| PpuMI | RGGWCCY | 1 cut(s) | 2998 |
| PscI | ACATGT | 2 cut(s) | 4537, 5074 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1480 |
| PshBI | ATTAAT | 2 cut(s) | 1880, 3090 |
| Psp124BI | GAGCTC | 3 cut(s) | 534, 4682, 5583 |
| Psp1406I | AACGTT | 2 cut(s) | 1054, 6091 |
| Psp5II | RGGWCCY | 1 cut(s) | 2998 |
| Psp6I | CCWGG | 9 cut(s) | 241, 1485, 2718, 2858, 4561, 4593, 5223, 5778, 6008 |
| PspCI | CACGTG | 2 cut(s) | 4941, 5534 |
| PspEI | GGTNACC | 1 cut(s) | 1105 |
| PspFI | CCCAGC | 2 cut(s) | 1633, 4625 |
| PspGI | CCWGG | 9 cut(s) | 241, 1485, 2718, 2858, 4561, 4593, 5223, 5778, 6008 |
| PspPI | GGNCC | 7 cut(s) | 259, 548, 1958, 2998, 3623, 4235, 4277 |
| PspPPI | RGGWCCY | 1 cut(s) | 2998 |
| PspXI | VCTCGAGB | 2 cut(s) | 39, 4894 |
| PstI | CTGCAG | 6 cut(s) | 646, 2806, 3276, 4285, 4615, 5900 |
| PstNI | CAGNNNCTG | 7 cut(s) | 2123, 2690, 3347, 3470, 3881, 4112, 4754 |
| PsuI | RGATCY | 8 cut(s) | 1928, 2791, 4198, 4411, 4751, 5360, 5782, 5990 |
| PsyI | GACNNNGTC | 1 cut(s) | 4760 |
| PvuII | CAGCTG | 2 cut(s) | 2399, 4109 |
| RruI | TCGCGA | 1 cut(s) | 2983 |
| SacI | GAGCTC | 3 cut(s) | 534, 4682, 5583 |
| SalI | GTCGAC | 1 cut(s) | 4449 |
| SapI | GCTCTTC | 1 cut(s) | 3507 |
| Sau96I | GGNCC | 7 cut(s) | 259, 548, 1958, 2998, 3623, 4235, 4277 |
| ScaI | AGTACT | 4 cut(s) | 1684, 4003, 4219, 4799 |
| SchI | GAGTC | 5 cut(s) | 1180, 2857, 2987, 3093, 5390 |
| SduI | GDGCHC | 4 cut(s) | 534, 4682, 5232, 5583 |
| SfcI | CTRYAG | 8 cut(s) | 642, 2081, 2802, 3272, 4281, 4611, 4858, 5896 |
| Sfr274I | CTCGAG | 2 cut(s) | 39, 4894 |
| SfuI | TTCGAA | 2 cut(s) | 3164, 6143 |
| SinI | GGWCC | 3 cut(s) | 1958, 2998, 3623 |
| SlaI | CTCGAG | 2 cut(s) | 39, 4894 |
| SmlI | CTYRAG | 9 cut(s) | 39, 215, 254, 2462, 2785, 3955, 4894, 5612, 5639 |
| SmoI | CTYRAG | 9 cut(s) | 39, 215, 254, 2462, 2785, 3955, 4894, 5612, 5639 |
| SnaBI | TACGTA | 1 cut(s) | 26 |
| SpeI | ACTAGT | 2 cut(s) | 4544, 5540 |
| SphI | GCATGC | 2 cut(s) | 4142, 4322 |
| SseBI | AGGCCT | 2 cut(s) | 1284, 4593 |
| SspI | AATATT | 3 cut(s) | 2182, 5375, 5410 |
| SstI | GAGCTC | 3 cut(s) | 534, 4682, 5583 |
| StuI | AGGCCT | 2 cut(s) | 1284, 4593 |
| StyI | CCWWGG | 5 cut(s) | 475, 1789, 1962, 2388, 3905 |
| TatI | WGTACW | 8 cut(s) | 1682, 2766, 3812, 4001, 4038, 4103, 4217, 4797 |
| TspGWI | ACGGA | 3 cut(s) | 366, 2816, 3640 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4760 |
| Vha464I | CTTAAG | 2 cut(s) | 3955, 5639 |
| VneI | GTGCAC | 1 cut(s) | 5228 |
| VpaK11BI | GGWCC | 3 cut(s) | 1958, 2998, 3623 |
| VspI | ATTAAT | 2 cut(s) | 1880, 3090 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 524 |
| XbaI | TCTAGA | 3 cut(s) | 3925, 4181, 4735 |
| XceI | RCATGY | 8 cut(s) | 345, 1503, 1533, 3668, 4142, 4322, 4541, 5078 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1796, 4779 |
| XhoI | CTCGAG | 2 cut(s) | 39, 4894 |
| XmaJI | CCTAGG | 1 cut(s) | 3905 |
| XmiI | GTMKAC | 3 cut(s) | 3654, 4450, 5725 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1155, 2487, 2583, 4576 |
| ZraI | GACGTC | 1 cut(s) | 1132 |
| ZrmI | AGTACT | 4 cut(s) | 1684, 4003, 4219, 4799 |
| Zsp2I | ATGCAT | 1 cut(s) | 1317 |