Rh4CG315100

Amidohydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0015263
Physical Location & Seq
Reverse (-)
57759482 .. 57760652
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG315100.1

Sequence Viewer

Length: 510 bp
ATGACCAATGAAGTTGGAAAGGCAATGTTCTCCAAGGCGGGAGAACTTGGAGTACCAGTTGGCTTTATGTGTATGAAGGGCCTCGGTCTGCATATTTCAGAAATTGAGGAACTATGCACAGAGTTTCCTTCAACACTTGTATTACTTGATCATTTGGCTTTCTGCAAACCACCAATAAATGATGAGGAAAATGAGGCTTTCTCTGCACTTTTAAAGCTATCCAGATTTCCACAGGTCTATGTAAAAGTAAGTGCACTTTTCAGGGTGTCAAGAATGCCATTTCCATATGAAGATGTATCTCACACACTGTCCCAAGTTGTGTCAAGTTTTGGTGCTAACCGGGTCATGTGGGGCAGTGATTTTCCATTTGTTGTTGCTGAGTGTGGTTATAAAGGAGCAAAAGAAGCCGTTTCTTTGATTGCCAGTAAAATACCTCTATCGTCTTCAGAGTTGGACTGGATCATGGGTAGAACAATCTTGCAACTCTTCCAGAATCAGTGGCTTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amidohydro_2

Protein Analysis

169

Amino Acids

18.77

Weight (kDa)

5.38

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Amidohydro_2 PF04909 9 - 163 1.4e-20 Amidohydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35450
fragaria_vesca FvH4_4g23290 FvH4_4g23290
malus_domestica MD16G1123900.v1.1
prunus_persica Prupe.1G221700_v2.0.a1
pyrus_communis pycom16g10590
rosa_chinensis RchiOBHm_Chr4g0429651
rosa_laevigata RLG00000007055
rosa_multiflora Rmu_sc0006590.1_g000006
rosa_roxburghii Rroxscaffold_5G00371330
rosa_rugosa Rorug04G0237500
rosa_samantha Rh4AG293500 Rh4BG299300 Rh4CG315100 Rh4DG296400
rosa_wichuraiana Rw4G025400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 390
AciI CCGC 1 cut(s) 38
AclWI GGATC 1 cut(s) 467
AcuI CTGAAG 1 cut(s) 429
AfaI GTAC 1 cut(s) 54
AgsI TTSAA 1 cut(s) 132
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
Alw21I GWGCWC 1 cut(s) 256
Alw44I GTGCAC 1 cut(s) 252
AlwI GGATC 1 cut(s) 467
AoxI GGCC 1 cut(s) 79
ApaLI GTGCAC 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 79
AsuC2I CCSGG 1 cut(s) 341
BaeGI GKGCMC 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 435
Bbv12I GWGCWC 1 cut(s) 256
BceAI ACGGC 1 cut(s) 392
BclI TGATCA 1 cut(s) 148
BcnI CCSGG 1 cut(s) 341
Bme1390I CCNGG 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 435
BplI GAGNNNNNCTC 2 cut(s) 185, 217
BpuMI CCSGG 1 cut(s) 341
BsaJI CCNNGG 2 cut(s) 33, 82
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bse1I ACTGG 3 cut(s) 56, 423, 461
Bse3DI GCAATG 1 cut(s) 30
BseDI CCNNGG 2 cut(s) 33, 82
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 3 cut(s) 56, 423, 461
BseSI GKGCMC 1 cut(s) 256
BsgI GTGCAG 1 cut(s) 189
BshFI GGCC 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 256
BsiSI CCGG 1 cut(s) 340
BslFI GGGAC 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 295
BsmI GAATGC 1 cut(s) 279
BsnI GGCC 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 2 cut(s) 148, 459
BspACI CCGC 1 cut(s) 38
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 1 cut(s) 370
BspPI GGATC 1 cut(s) 467
BsrDI GCAATG 1 cut(s) 30
BsrI ACTGG 3 cut(s) 56, 423, 461
BssECI CCNNGG 2 cut(s) 33, 82
BssMI GATC 2 cut(s) 148, 459
BssT1I CCWWGG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 309
Bst6I CTCTTC 1 cut(s) 491
BstDEI CTNAG 1 cut(s) 378
BstKTI GATC 2 cut(s) 151, 462
BstMBI GATC 2 cut(s) 148, 459
BstMWI GCNNNNNNNGC 2 cut(s) 203, 404
BstSCI CCNGG 1 cut(s) 339
BstSLI GKGCMC 1 cut(s) 256
BstV2I GAAGAC 1 cut(s) 435
BsuRI GGCC 1 cut(s) 81
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 3 cut(s) 305, 361, 503
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 53
CviAII CATG 2 cut(s) 346, 463
CviJI RGCY 7 cut(s) 63, 81, 158, 197, 217, 407, 502
CviKI_1 RGCY 7 cut(s) 63, 81, 158, 197, 217, 407, 502
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 1 cut(s) 378
DpnI GATC 2 cut(s) 150, 461
DpnII GATC 2 cut(s) 148, 459
DraI TTTAAA 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 491
EarI CTCTTC 1 cut(s) 491
Eco130I CCWWGG 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 429
EcoO109I RGGNCCY 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 2 cut(s) 349, 466
FaqI GGGAC 1 cut(s) 295
FatI CATG 2 cut(s) 345, 462
FauI CCCGC 1 cut(s) 31
FauNDI CATATG 1 cut(s) 286
FbaI TGATCA 1 cut(s) 148
HaeIII GGCC 1 cut(s) 81
HapII CCGG 1 cut(s) 340
Hin1II CATG 2 cut(s) 349, 466
HinfI GANTC 1 cut(s) 493
HpaII CCGG 1 cut(s) 340
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 2 cut(s) 100, 448
Hpy188III TCNNGA 3 cut(s) 222, 270, 490
Hpy8I GTNNAC 1 cut(s) 254
HpyAV CCTTC 2 cut(s) 70, 138
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4V TGCA 6 cut(s) 91, 117, 165, 206, 254, 481
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 404
HpyF3I CTNAG 1 cut(s) 378
Hsp92II CATG 2 cut(s) 349, 466
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 2 cut(s) 148, 459
LmnI GCTCC 1 cut(s) 395
LpnPI CCDG 8 cut(s) 69, 218, 235, 247, 353, 436, 442, 503
MalI GATC 2 cut(s) 150, 461
MboI GATC 2 cut(s) 148, 459
MboII GAAGA 3 cut(s) 302, 435, 478
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 1 cut(s) 102
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 5 cut(s) 92, 100, 178, 187, 444
MseI TTAA 1 cut(s) 212
MspI CCGG 1 cut(s) 340
MspR9I CCNGG 1 cut(s) 341
Mva1269I GAATGC 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 203, 404
NciI CCSGG 1 cut(s) 341
NdeI CATATG 1 cut(s) 286
NdeII GATC 2 cut(s) 148, 459
NlaIII CATG 2 cut(s) 349, 466
PctI GAATGC 1 cut(s) 279
PfeI GAWTC 1 cut(s) 493
PsiI TTATAA 1 cut(s) 390
PspPI GGNCC 1 cut(s) 79
PsrI GAACNNNNNNTAC 2 cut(s) 36, 68
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SaqAI TTAA 1 cut(s) 212
Sau3AI GATC 2 cut(s) 148, 459
Sau96I GGNCC 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 341
SduI GDGCHC 1 cut(s) 256
SetI ASST 3 cut(s) 219, 237, 436
Sse9I AATT 1 cut(s) 102
SsiI CCGC 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 309
TaqII GACCGA 1 cut(s) 74
TasI AATT 1 cut(s) 102
TfiI GAWTC 1 cut(s) 493
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 3 cut(s) 312, 361, 503
TspDTI ATGAA 3 cut(s) 24, 89, 303
TspRI CASTG 3 cut(s) 312, 361, 503
VneI GTGCAC 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.