Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0013210

Physical Location & Seq

Genomic Coordinates Forward (+)

18282431 .. 18287589

Gene Structure 5159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG170400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCAACAGTTTATGACAATAACTGGAGCGAGTGATAAAGTCTCTCTGCAGACTCTGAAAGCGAGTGATTGGCATCTTGAAGGAGCATTTGATATATTCTACAGCCAGCCTCAGATTCAAGCACATACTGATTCTAGACATTTGGAGAAACTATACAATAGATATAAAGATCCAAGTGTTGACATGATACTCGCTGATGGTATCAGTCTCCTTTGCACTGATCTCAAGGTGGATCCTCAAGATATAGTCATGTTAGTTGTTTCCTGGCACATGAAGGCAGCCACCATGTGTGAATTTTCCAAGAATGAGTTCATAGATGGATTAGAAGCACTAGGGATAGATTCTCTGGAGAAGTTCCGCGAAAAGATGCCCTTTATGCGATCTGAGCTAAGAGATGAACAGAAGTTTCGGGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAAAAGGGTCAGAAGTCACTGGCATTGGATACTGCAATTGGAATGTGGCAATTACTGTTTGCTGAAAAGCAGTGGCCATATGTTGAGCATTGGTGTCAGTTCTTACAGGCTCGGCATAACAAGGCAATTTCTAGGGACACATGGTCCCAACTACTAGAGTTTGCAAGGGCTGTTGATTCATCACTATCAAATTATGATGCGGAAGGTGCTTGGCCCTATCTCATAGACGAATTTGTCGAGTACTTGAAGGAGAATGGCGTAATCAAAAGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cullin_binding UBA_4

Protein Analysis

239

Amino Acids

27.79

Weight (kDa)

5.11

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_4	PF14555	2 - 37	2.7e-09	UBA-like domain
UBA_8	PF22566	2 - 34	2.7e-08	UBA-like domain
Cullin_binding	PF03556	119 - 229	7.9e-38	Cullin binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12760
fragaria_vesca	FvH4_3g14590 FvH4_3g14590
malus_domestica	MD05G1234900.v1.1 MD10G1211100.v1.1
prunus_persica	Prupe.4G131300_v2.0.a1
pyrus_communis	pycom05g21180 pycom10g17940
rosa_chinensis	RchiOBHm_Chr5g0024051
rosa_laevigata	RLG00000032757
rosa_multiflora	Rmu_sc0011761.1_g000007
rosa_roxburghii	Rroxscaffold_1G00055190
rosa_rugosa	Rorug05G0081200 Rorug05G0081200
rosa_samantha	Rh5AG171600 Rh5CG183800 Rh5DG170400
rosa_wichuraiana	Rw5G015530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	677
AccII	CGCG	1 cut(s)	360
AciI	CCGC	2 cut(s)	358, 644
AclWI	GGATC	3 cut(s)	164, 227, 240
AcoI	YGGCCR	1 cut(s)	518
AcsI	RAATTY	2 cut(s)	293, 674
AdeI	CACNNNGTG	1 cut(s)	288
AfaI	GTAC	1 cut(s)	686
AgsI	TTSAA	3 cut(s)	80, 119, 691
AhdI	GACNNNNNGTC	1 cut(s)	586
AjnI	CCWGG	1 cut(s)	263
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AluBI	AGCT	1 cut(s)	388
AluI	AGCT	1 cut(s)	388
Alw26I	GTCTC	2 cut(s)	46, 212
AlwI	GGATC	3 cut(s)	164, 227, 240
AlwNI	CAGNNNCTG	1 cut(s)	55
AoxI	GGCC	2 cut(s)	518, 656
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	2 cut(s)	293, 674
Asp700I	GAANNNNTTC	1 cut(s)	308
AspS9I	GGNCC	2 cut(s)	588, 657
AvaII	GGWCC	1 cut(s)	588
BalI	TGGCCA	1 cut(s)	520
BamHI	GGATCC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	290
BccI	CCATC	2 cut(s)	191, 311
BciT130I	CCWGG	1 cut(s)	265
BciVI	GTATCC	1 cut(s)	466
BcoDI	GTCTC	2 cut(s)	46, 212
BfaI	CTAG	4 cut(s)	135, 332, 576, 599
BfmI	CTRYAG	2 cut(s)	47, 100
BfuI	GTATCC	1 cut(s)	466
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
BmcAI	AGTACT	1 cut(s)	686
Bme1390I	CCNGG	1 cut(s)	265
Bme18I	GGWCC	1 cut(s)	588
BmeRI	GACNNNNNGTC	1 cut(s)	586
BmgT120I	GGNCC	2 cut(s)	588, 657
BmiI	GGNNCC	2 cut(s)	234, 590
BmrFI	CCNGG	1 cut(s)	265
BmsI	GCATC	3 cut(s)	82, 357, 631
BpmI	CTGGAG	2 cut(s)	45, 368
BpuEI	CTTGAG	2 cut(s)	209, 222
BsaBI	GATNNNNATC	1 cut(s)	72
Bse1I	ACTGG	2 cut(s)	28, 468
Bse8I	GATNNNNATC	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	265
BseJI	GATNNNNATC	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	125, 375
BseNI	ACTGG	2 cut(s)	28, 468
BseXI	GCAGC	1 cut(s)	290
BseYI	CCCAGC	1 cut(s)	435
Bsh1236I	CGCG	1 cut(s)	360
BshFI	GGCC	2 cut(s)	520, 658
BslFI	GGGAC	2 cut(s)	574, 593
BsmAI	GTCTC	2 cut(s)	46, 212
BsmFI	GGGAC	2 cut(s)	574, 593
BsnI	GGCC	2 cut(s)	520, 658
Bsp143I	GATC	4 cut(s)	169, 220, 232, 380
BspACI	CCGC	2 cut(s)	358, 644
BspANI	GGCC	2 cut(s)	520, 658
BspCNI	CTCAG	2 cut(s)	124, 376
BspFNI	CGCG	1 cut(s)	360
BspLI	GGNNCC	2 cut(s)	234, 590
BspMAI	CTGCAG	1 cut(s)	51
BspPI	GGATC	3 cut(s)	164, 227, 240
BsrI	ACTGG	2 cut(s)	28, 468
BssMI	GATC	4 cut(s)	169, 220, 232, 380
Bst2UI	CCWGG	1 cut(s)	265
Bst4CI	ACNGT	2 cut(s)	9, 501
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	3 cut(s)	111, 384, 389
BstFNI	CGCG	1 cut(s)	360
BstKTI	GATC	4 cut(s)	172, 223, 235, 383
BstMAI	GTCTC	2 cut(s)	46, 212
BstMBI	GATC	4 cut(s)	169, 220, 232, 380
BstMWI	GCNNNNNNNGC	3 cut(s)	376, 385, 650
BstNI	CCWGG	1 cut(s)	265
BstSCI	CCNGG	1 cut(s)	263
BstSFI	CTRYAG	2 cut(s)	47, 100
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	290
BstX2I	RGATCY	2 cut(s)	169, 232
BstYI	RGATCY	2 cut(s)	169, 232
BsuI	GTATCC	1 cut(s)	466
BsuRI	GGCC	2 cut(s)	520, 658
BtsI	GCAGTG	1 cut(s)	521
BtsIMutI	CAGTG	3 cut(s)	216, 461, 521
Cac8I	GCNNGC	1 cut(s)	107
CaiI	CAGNNNCTG	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	588, 657
Csp6I	GTAC	1 cut(s)	685
CviAII	CATG	5 cut(s)	184, 250, 271, 286, 585
CviJI	RGCY	9 cut(s)	105, 109, 281, 388, 435, 520, 554, 614, 658
CviKI_1	RGCY	9 cut(s)	105, 109, 281, 388, 435, 520, 554, 614, 658
CviQI	GTAC	1 cut(s)	685
DdeI	CTNAG	3 cut(s)	111, 384, 389
DpnI	GATC	4 cut(s)	171, 222, 234, 382
DpnII	GATC	4 cut(s)	169, 220, 232, 380
DraIII	CACNNNGTG	1 cut(s)	288
DrdI	GACNNNNNNGTC	1 cut(s)	677
DriI	GACNNNNNGTC	1 cut(s)	586
DseDI	GACNNNNNNGTC	1 cut(s)	677
EaeI	YGGCCR	1 cut(s)	518
Eam1105I	GACNNNNNGTC	1 cut(s)	586
Eco47I	GGWCC	1 cut(s)	588
EcoRII	CCWGG	1 cut(s)	263
FaeI	CATG	5 cut(s)	187, 253, 274, 289, 588
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FaqI	GGGAC	2 cut(s)	574, 593
FatI	CATG	5 cut(s)	183, 249, 270, 285, 584
FauNDI	CATATG	1 cut(s)	523
Fnu4HI	GCNGC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	4 cut(s)	135, 332, 576, 599
GluI	GCNGC	1 cut(s)	279
GsaI	CCCAGC	1 cut(s)	439
GsuI	CTGGAG	2 cut(s)	45, 368
HaeIII	GGCC	2 cut(s)	520, 658
Hin1II	CATG	5 cut(s)	187, 253, 274, 289, 588
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	5 cut(s)	52, 115, 131, 341, 620
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	4 cut(s)	57, 114, 385, 456
Hpy188III	TCNNGA	5 cut(s)	77, 135, 239, 347, 410
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	4 cut(s)	74, 268, 641, 685
HpyCH4III	ACNGT	2 cut(s)	9, 501
HpyCH4V	TGCA	5 cut(s)	4, 49, 216, 479, 608
HpyF10VI	GCNNNNNNNGC	3 cut(s)	376, 385, 650
HpyF3I	CTNAG	3 cut(s)	111, 384, 389
Hsp92II	CATG	5 cut(s)	187, 253, 274, 289, 588
Kzo9I	GATC	4 cut(s)	169, 220, 232, 380
LmnI	GCTCC	2 cut(s)	26, 83
LpnPI	CCDG	8 cut(s)	9, 119, 250, 277, 332, 421, 449, 536
Lsp1109I	GCAGC	1 cut(s)	290
LweI	GCATC	3 cut(s)	82, 357, 631
MaeI	CTAG	4 cut(s)	135, 332, 576, 599
MaeIII	GTNAC	1 cut(s)	459
MalI	GATC	4 cut(s)	171, 222, 234, 382
MboI	GATC	4 cut(s)	169, 220, 232, 380
MfeI	CAATTG	1 cut(s)	480
MflI	RGATCY	2 cut(s)	169, 232
MlsI	TGGCCA	1 cut(s)	520
MluCI	AATT	7 cut(s)	293, 421, 480, 494, 570, 634, 674
MluNI	TGGCCA	1 cut(s)	520
MlyI	GAGTC	1 cut(s)	46
MnlI	CCTC	2 cut(s)	120, 246
Mox20I	TGGCCA	1 cut(s)	520
MroXI	GAANNNNTTC	1 cut(s)	308
MscI	TGGCCA	1 cut(s)	520
Msp20I	TGGCCA	1 cut(s)	520
MspR9I	CCNGG	1 cut(s)	265
MunI	CAATTG	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	265
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	3 cut(s)	376, 385, 650
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	4 cut(s)	169, 220, 232, 380
NlaIII	CATG	5 cut(s)	187, 253, 274, 289, 588
NlaIV	GGNNCC	2 cut(s)	234, 590
NmeAIII	GCCGAG	1 cut(s)	535
NmuCI	GTSAC	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	1 cut(s)	678
PdmI	GAANNNNTTC	1 cut(s)	308
PfeI	GAWTC	4 cut(s)	115, 131, 341, 620
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	263
PspFI	CCCAGC	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	263
PspN4I	GGNNCC	2 cut(s)	234, 590
PspPI	GGNCC	2 cut(s)	588, 657
PstI	CTGCAG	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	55
PsuI	RGATCY	2 cut(s)	169, 232
RsaI	GTAC	1 cut(s)	686
RsaNI	GTAC	1 cut(s)	685
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	4 cut(s)	169, 220, 232, 380
Sau96I	GGNCC	2 cut(s)	588, 657
ScaI	AGTACT	1 cut(s)	686
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	265
SetI	ASST	3 cut(s)	231, 390, 652
SfaNI	GCATC	3 cut(s)	82, 357, 631
SfcI	CTRYAG	2 cut(s)	47, 100
SinI	GGWCC	1 cut(s)	588
SmlI	CTYRAG	2 cut(s)	224, 237
SmoI	CTYRAG	2 cut(s)	224, 237
Sse9I	AATT	7 cut(s)	293, 421, 480, 494, 570, 634, 674
SsiI	CCGC	2 cut(s)	358, 644
SspMI	CTAG	4 cut(s)	135, 332, 576, 599
StyD4I	CCNGG	1 cut(s)	263
TaaI	ACNGT	2 cut(s)	9, 501
TaqI	TCGA	1 cut(s)	681
TasI	AATT	7 cut(s)	293, 421, 480, 494, 570, 634, 674
TatI	WGTACW	1 cut(s)	684
TfiI	GAWTC	4 cut(s)	115, 131, 341, 620
TscAI	CASTG	3 cut(s)	223, 468, 521
TseFI	GTSAC	1 cut(s)	459
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	459
TspDTI	ATGAA	4 cut(s)	287, 301, 411, 612
TspRI	CASTG	3 cut(s)	223, 468, 521
VpaK11BI	GGWCC	1 cut(s)	588
XapI	RAATTY	2 cut(s)	293, 674
XbaI	TCTAGA	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	308
XspI	CTAG	4 cut(s)	135, 332, 576, 599
ZrmI	AGTACT	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.